Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16550

Experiment: marine broth pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16530 and PGA1_c16540 overlap by 8 nucleotidesPGA1_c16540 and PGA1_c16550 overlap by 1 nucleotidesPGA1_c16550 and PGA1_c16560 are separated by 98 nucleotides PGA1_c16530: PGA1_c16530 - putative branched-chain amino acid transporter, ATP-binding protein, at 1,714,984 to 1,715,754 _c16530 PGA1_c16540: PGA1_c16540 - putative branched-chain amino acid transport system, permease component, at 1,715,747 to 1,716,730 _c16540 PGA1_c16550: PGA1_c16550 - putative branched-chain amino acid transport system, permease component, at 1,716,730 to 1,717,650 _c16550 PGA1_c16560: PGA1_c16560 - extracellular ligand binding domain-containing protein, at 1,717,749 to 1,718,885 _c16560 Position (kb) 1716 1717 1718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1715.782 kb on - strandat 1715.885 kb on + strand, within PGA1_c16540at 1715.885 kb on + strand, within PGA1_c16540at 1715.890 kb on + strand, within PGA1_c16540at 1715.898 kb on - strand, within PGA1_c16540at 1715.900 kb on + strand, within PGA1_c16540at 1715.903 kb on - strand, within PGA1_c16540at 1715.928 kb on - strand, within PGA1_c16540at 1715.928 kb on - strand, within PGA1_c16540at 1715.964 kb on - strand, within PGA1_c16540at 1716.073 kb on + strand, within PGA1_c16540at 1716.078 kb on - strand, within PGA1_c16540at 1716.081 kb on - strand, within PGA1_c16540at 1716.081 kb on - strand, within PGA1_c16540at 1716.101 kb on - strand, within PGA1_c16540at 1716.145 kb on - strand, within PGA1_c16540at 1716.145 kb on - strand, within PGA1_c16540at 1716.245 kb on - strand, within PGA1_c16540at 1716.245 kb on - strand, within PGA1_c16540at 1716.281 kb on + strand, within PGA1_c16540at 1716.289 kb on - strand, within PGA1_c16540at 1716.289 kb on - strand, within PGA1_c16540at 1716.289 kb on - strand, within PGA1_c16540at 1716.337 kb on - strand, within PGA1_c16540at 1716.363 kb on - strand, within PGA1_c16540at 1716.363 kb on - strand, within PGA1_c16540at 1716.460 kb on + strand, within PGA1_c16540at 1716.556 kb on + strand, within PGA1_c16540at 1716.557 kb on + strand, within PGA1_c16540at 1716.576 kb on - strand, within PGA1_c16540at 1716.588 kb on - strand, within PGA1_c16540at 1716.605 kb on - strand, within PGA1_c16540at 1716.728 kb on + strandat 1716.733 kb on + strandat 1716.830 kb on + strand, within PGA1_c16550at 1716.850 kb on - strand, within PGA1_c16550at 1716.860 kb on - strand, within PGA1_c16550at 1716.992 kb on + strand, within PGA1_c16550at 1717.016 kb on + strand, within PGA1_c16550at 1717.016 kb on + strand, within PGA1_c16550at 1717.016 kb on + strand, within PGA1_c16550at 1717.024 kb on - strand, within PGA1_c16550at 1717.024 kb on - strand, within PGA1_c16550at 1717.069 kb on - strand, within PGA1_c16550at 1717.081 kb on - strand, within PGA1_c16550at 1717.197 kb on + strand, within PGA1_c16550at 1717.228 kb on + strand, within PGA1_c16550at 1717.241 kb on - strand, within PGA1_c16550at 1717.255 kb on + strand, within PGA1_c16550at 1717.255 kb on + strand, within PGA1_c16550at 1717.309 kb on + strand, within PGA1_c16550at 1717.309 kb on + strand, within PGA1_c16550at 1717.309 kb on - strand, within PGA1_c16550at 1717.317 kb on - strand, within PGA1_c16550at 1717.344 kb on + strand, within PGA1_c16550at 1717.352 kb on - strand, within PGA1_c16550at 1717.352 kb on - strand, within PGA1_c16550at 1717.352 kb on - strand, within PGA1_c16550at 1717.352 kb on - strand, within PGA1_c16550at 1717.381 kb on + strand, within PGA1_c16550at 1717.389 kb on - strand, within PGA1_c16550at 1717.389 kb on - strand, within PGA1_c16550at 1717.530 kb on + strand, within PGA1_c16550at 1717.561 kb on + strandat 1717.561 kb on + strandat 1717.566 kb on + strandat 1717.567 kb on + strandat 1717.567 kb on + strandat 1717.569 kb on - strandat 1717.575 kb on - strandat 1717.658 kb on - strandat 1717.661 kb on + strandat 1717.661 kb on + strandat 1717.661 kb on + strandat 1717.667 kb on + strandat 1717.667 kb on + strandat 1717.669 kb on - strandat 1717.737 kb on + strandat 1717.746 kb on + strandat 1717.754 kb on - strandat 1717.758 kb on + strandat 1717.776 kb on - strandat 1717.823 kb on - strandat 1717.906 kb on + strand, within PGA1_c16560at 1717.914 kb on - strand, within PGA1_c16560at 1717.923 kb on + strand, within PGA1_c16560at 1717.931 kb on - strand, within PGA1_c16560at 1717.931 kb on - strand, within PGA1_c16560at 1717.950 kb on - strand, within PGA1_c16560at 1717.963 kb on + strand, within PGA1_c16560at 1717.965 kb on - strand, within PGA1_c16560at 1717.971 kb on - strand, within PGA1_c16560at 1717.971 kb on - strand, within PGA1_c16560at 1717.998 kb on + strand, within PGA1_c16560at 1717.998 kb on + strand, within PGA1_c16560at 1717.998 kb on + strand, within PGA1_c16560at 1717.998 kb on + strand, within PGA1_c16560at 1718.006 kb on - strand, within PGA1_c16560at 1718.006 kb on - strand, within PGA1_c16560at 1718.006 kb on - strand, within PGA1_c16560at 1718.011 kb on + strand, within PGA1_c16560at 1718.022 kb on - strand, within PGA1_c16560at 1718.073 kb on + strand, within PGA1_c16560at 1718.090 kb on - strand, within PGA1_c16560at 1718.090 kb on - strand, within PGA1_c16560at 1718.118 kb on + strand, within PGA1_c16560at 1718.126 kb on - strand, within PGA1_c16560at 1718.126 kb on - strand, within PGA1_c16560at 1718.126 kb on - strand, within PGA1_c16560at 1718.126 kb on - strand, within PGA1_c16560at 1718.156 kb on + strand, within PGA1_c16560at 1718.164 kb on - strand, within PGA1_c16560at 1718.189 kb on + strand, within PGA1_c16560at 1718.189 kb on + strand, within PGA1_c16560at 1718.189 kb on + strand, within PGA1_c16560at 1718.189 kb on + strand, within PGA1_c16560at 1718.260 kb on - strand, within PGA1_c16560at 1718.288 kb on - strand, within PGA1_c16560at 1718.312 kb on + strand, within PGA1_c16560at 1718.328 kb on + strand, within PGA1_c16560at 1718.375 kb on + strand, within PGA1_c16560at 1718.388 kb on - strand, within PGA1_c16560at 1718.400 kb on - strand, within PGA1_c16560at 1718.400 kb on - strand, within PGA1_c16560at 1718.442 kb on - strand, within PGA1_c16560at 1718.442 kb on - strand, within PGA1_c16560at 1718.561 kb on - strand, within PGA1_c16560at 1718.616 kb on + strand, within PGA1_c16560at 1718.623 kb on + strand, within PGA1_c16560

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH9
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1,715,782 - -1.7
1,715,885 + PGA1_c16540 0.14 +0.9
1,715,885 + PGA1_c16540 0.14 +0.3
1,715,890 + PGA1_c16540 0.15 -1.0
1,715,898 - PGA1_c16540 0.15 +1.1
1,715,900 + PGA1_c16540 0.16 -1.3
1,715,903 - PGA1_c16540 0.16 -1.8
1,715,928 - PGA1_c16540 0.18 +0.3
1,715,928 - PGA1_c16540 0.18 +0.0
1,715,964 - PGA1_c16540 0.22 +0.6
1,716,073 + PGA1_c16540 0.33 -2.0
1,716,078 - PGA1_c16540 0.34 +1.4
1,716,081 - PGA1_c16540 0.34 -1.3
1,716,081 - PGA1_c16540 0.34 -2.1
1,716,101 - PGA1_c16540 0.36 -1.8
1,716,145 - PGA1_c16540 0.40 -0.7
1,716,145 - PGA1_c16540 0.40 -1.5
1,716,245 - PGA1_c16540 0.51 -1.8
1,716,245 - PGA1_c16540 0.51 -0.0
1,716,281 + PGA1_c16540 0.54 -0.1
1,716,289 - PGA1_c16540 0.55 -1.5
1,716,289 - PGA1_c16540 0.55 -1.9
1,716,289 - PGA1_c16540 0.55 -1.8
1,716,337 - PGA1_c16540 0.60 +0.3
1,716,363 - PGA1_c16540 0.63 +1.0
1,716,363 - PGA1_c16540 0.63 -0.7
1,716,460 + PGA1_c16540 0.72 +0.6
1,716,556 + PGA1_c16540 0.82 -2.1
1,716,557 + PGA1_c16540 0.82 +1.7
1,716,576 - PGA1_c16540 0.84 +0.5
1,716,588 - PGA1_c16540 0.85 -1.8
1,716,605 - PGA1_c16540 0.87 +1.3
1,716,728 + +0.5
1,716,733 + +1.3
1,716,830 + PGA1_c16550 0.11 +1.5
1,716,850 - PGA1_c16550 0.13 +1.1
1,716,860 - PGA1_c16550 0.14 -0.6
1,716,992 + PGA1_c16550 0.28 -2.3
1,717,016 + PGA1_c16550 0.31 -1.6
1,717,016 + PGA1_c16550 0.31 -2.0
1,717,016 + PGA1_c16550 0.31 -2.8
1,717,024 - PGA1_c16550 0.32 -0.3
1,717,024 - PGA1_c16550 0.32 -0.2
1,717,069 - PGA1_c16550 0.37 -0.1
1,717,081 - PGA1_c16550 0.38 -0.8
1,717,197 + PGA1_c16550 0.51 +0.1
1,717,228 + PGA1_c16550 0.54 +1.3
1,717,241 - PGA1_c16550 0.55 -2.2
1,717,255 + PGA1_c16550 0.57 -0.7
1,717,255 + PGA1_c16550 0.57 +0.8
1,717,309 + PGA1_c16550 0.63 +1.0
1,717,309 + PGA1_c16550 0.63 -0.4
1,717,309 - PGA1_c16550 0.63 -0.3
1,717,317 - PGA1_c16550 0.64 -1.1
1,717,344 + PGA1_c16550 0.67 +0.0
1,717,352 - PGA1_c16550 0.68 -1.5
1,717,352 - PGA1_c16550 0.68 -1.2
1,717,352 - PGA1_c16550 0.68 -0.8
1,717,352 - PGA1_c16550 0.68 +0.2
1,717,381 + PGA1_c16550 0.71 -2.1
1,717,389 - PGA1_c16550 0.72 -1.8
1,717,389 - PGA1_c16550 0.72 +2.0
1,717,530 + PGA1_c16550 0.87 -1.7
1,717,561 + +1.1
1,717,561 + -0.4
1,717,566 + +0.2
1,717,567 + +1.0
1,717,567 + +0.8
1,717,569 - +0.1
1,717,575 - +0.7
1,717,658 - +0.7
1,717,661 + +0.1
1,717,661 + +1.1
1,717,661 + -0.4
1,717,667 + +0.1
1,717,667 + -2.0
1,717,669 - +0.1
1,717,737 + +1.1
1,717,746 + +1.4
1,717,754 - -0.1
1,717,758 + -1.1
1,717,776 - -1.1
1,717,823 - -0.5
1,717,906 + PGA1_c16560 0.14 +0.6
1,717,914 - PGA1_c16560 0.15 -0.1
1,717,923 + PGA1_c16560 0.15 +0.3
1,717,931 - PGA1_c16560 0.16 -0.0
1,717,931 - PGA1_c16560 0.16 +0.1
1,717,950 - PGA1_c16560 0.18 +1.5
1,717,963 + PGA1_c16560 0.19 +0.8
1,717,965 - PGA1_c16560 0.19 +0.3
1,717,971 - PGA1_c16560 0.20 -0.1
1,717,971 - PGA1_c16560 0.20 +0.2
1,717,998 + PGA1_c16560 0.22 -0.2
1,717,998 + PGA1_c16560 0.22 -0.8
1,717,998 + PGA1_c16560 0.22 +1.4
1,717,998 + PGA1_c16560 0.22 -0.3
1,718,006 - PGA1_c16560 0.23 +1.8
1,718,006 - PGA1_c16560 0.23 +1.5
1,718,006 - PGA1_c16560 0.23 +0.3
1,718,011 + PGA1_c16560 0.23 +3.0
1,718,022 - PGA1_c16560 0.24 -0.9
1,718,073 + PGA1_c16560 0.28 -0.5
1,718,090 - PGA1_c16560 0.30 -1.1
1,718,090 - PGA1_c16560 0.30 +3.4
1,718,118 + PGA1_c16560 0.32 +0.4
1,718,126 - PGA1_c16560 0.33 +0.3
1,718,126 - PGA1_c16560 0.33 -2.4
1,718,126 - PGA1_c16560 0.33 +0.8
1,718,126 - PGA1_c16560 0.33 +0.1
1,718,156 + PGA1_c16560 0.36 -2.1
1,718,164 - PGA1_c16560 0.36 +0.5
1,718,189 + PGA1_c16560 0.39 -0.4
1,718,189 + PGA1_c16560 0.39 +1.3
1,718,189 + PGA1_c16560 0.39 +0.2
1,718,189 + PGA1_c16560 0.39 +0.6
1,718,260 - PGA1_c16560 0.45 +1.3
1,718,288 - PGA1_c16560 0.47 +0.9
1,718,312 + PGA1_c16560 0.50 -0.0
1,718,328 + PGA1_c16560 0.51 -1.3
1,718,375 + PGA1_c16560 0.55 +0.5
1,718,388 - PGA1_c16560 0.56 +2.3
1,718,400 - PGA1_c16560 0.57 -1.5
1,718,400 - PGA1_c16560 0.57 +0.6
1,718,442 - PGA1_c16560 0.61 -1.6
1,718,442 - PGA1_c16560 0.61 +0.5
1,718,561 - PGA1_c16560 0.71 -0.5
1,718,616 + PGA1_c16560 0.76 +1.7
1,718,623 + PGA1_c16560 0.77 -2.8

Or see this region's nucleotide sequence