Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01090

Experiment: marine broth pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01070 and PGA1_c01080 are separated by 6 nucleotidesPGA1_c01080 and PGA1_c01090 are separated by 2 nucleotidesPGA1_c01090 and PGA1_c01100 overlap by 17 nucleotidesPGA1_c01100 and PGA1_c01110 are separated by 112 nucleotides PGA1_c01070: PGA1_c01070 - GTP-binding protein Era, at 100,513 to 101,418 _c01070 PGA1_c01080: PGA1_c01080 - Uncharacterized conserved protein, at 101,425 to 101,754 _c01080 PGA1_c01090: PGA1_c01090 - DNA repair protein RecO, at 101,757 to 102,482 _c01090 PGA1_c01100: PGA1_c01100 - Heat shock protein, at 102,466 to 102,870 _c01100 PGA1_c01110: PGA1_c01110 - acyl-CoA dehydrogenase, at 102,983 to 104,668 _c01110 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 101.399 kb on + strandat 101.444 kb on + strandat 101.465 kb on - strand, within PGA1_c01080at 101.465 kb on - strand, within PGA1_c01080at 101.569 kb on - strand, within PGA1_c01080at 101.593 kb on + strand, within PGA1_c01080at 101.595 kb on + strand, within PGA1_c01080at 101.630 kb on + strand, within PGA1_c01080at 101.738 kb on + strandat 101.743 kb on + strandat 101.743 kb on + strandat 101.748 kb on + strandat 101.860 kb on - strand, within PGA1_c01090at 101.860 kb on - strand, within PGA1_c01090at 101.879 kb on + strand, within PGA1_c01090at 101.903 kb on - strand, within PGA1_c01090at 102.086 kb on + strand, within PGA1_c01090at 102.117 kb on + strand, within PGA1_c01090at 102.163 kb on + strand, within PGA1_c01090at 102.224 kb on - strand, within PGA1_c01090at 102.224 kb on - strand, within PGA1_c01090at 102.236 kb on - strand, within PGA1_c01090at 102.270 kb on + strand, within PGA1_c01090at 102.278 kb on - strand, within PGA1_c01090at 102.278 kb on - strand, within PGA1_c01090at 102.300 kb on + strand, within PGA1_c01090at 102.313 kb on - strand, within PGA1_c01090at 102.332 kb on - strand, within PGA1_c01090at 102.372 kb on + strand, within PGA1_c01090at 102.379 kb on + strand, within PGA1_c01090at 102.392 kb on - strand, within PGA1_c01090at 102.519 kb on + strand, within PGA1_c01100at 102.522 kb on - strand, within PGA1_c01100at 102.527 kb on + strand, within PGA1_c01100at 102.535 kb on - strand, within PGA1_c01100at 102.575 kb on - strand, within PGA1_c01100at 102.588 kb on + strand, within PGA1_c01100at 102.596 kb on - strand, within PGA1_c01100at 102.652 kb on - strand, within PGA1_c01100at 102.775 kb on + strand, within PGA1_c01100at 102.838 kb on - strandat 102.892 kb on - strandat 102.934 kb on + strandat 102.986 kb on + strandat 103.032 kb on + strandat 103.056 kb on + strandat 103.090 kb on + strandat 103.122 kb on + strandat 103.150 kb on - strandat 103.150 kb on - strandat 103.161 kb on + strand, within PGA1_c01110at 103.162 kb on + strand, within PGA1_c01110at 103.277 kb on + strand, within PGA1_c01110at 103.278 kb on - strand, within PGA1_c01110at 103.279 kb on - strand, within PGA1_c01110at 103.307 kb on + strand, within PGA1_c01110at 103.368 kb on - strand, within PGA1_c01110at 103.386 kb on + strand, within PGA1_c01110at 103.386 kb on + strand, within PGA1_c01110at 103.394 kb on - strand, within PGA1_c01110at 103.394 kb on - strand, within PGA1_c01110at 103.394 kb on - strand, within PGA1_c01110at 103.431 kb on - strand, within PGA1_c01110at 103.436 kb on + strand, within PGA1_c01110at 103.444 kb on - strand, within PGA1_c01110at 103.444 kb on - strand, within PGA1_c01110at 103.446 kb on + strand, within PGA1_c01110at 103.449 kb on - strand, within PGA1_c01110

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH9
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101,399 + -1.2
101,444 + -0.0
101,465 - PGA1_c01080 0.12 -0.2
101,465 - PGA1_c01080 0.12 +1.1
101,569 - PGA1_c01080 0.44 -0.5
101,593 + PGA1_c01080 0.51 +0.4
101,595 + PGA1_c01080 0.52 +0.5
101,630 + PGA1_c01080 0.62 +1.5
101,738 + +0.8
101,743 + +1.8
101,743 + +0.4
101,748 + +0.7
101,860 - PGA1_c01090 0.14 +0.6
101,860 - PGA1_c01090 0.14 -0.6
101,879 + PGA1_c01090 0.17 +0.7
101,903 - PGA1_c01090 0.20 -0.2
102,086 + PGA1_c01090 0.45 +0.3
102,117 + PGA1_c01090 0.50 -0.5
102,163 + PGA1_c01090 0.56 -1.3
102,224 - PGA1_c01090 0.64 -0.9
102,224 - PGA1_c01090 0.64 +0.9
102,236 - PGA1_c01090 0.66 +0.3
102,270 + PGA1_c01090 0.71 -2.5
102,278 - PGA1_c01090 0.72 +0.0
102,278 - PGA1_c01090 0.72 -0.2
102,300 + PGA1_c01090 0.75 -1.5
102,313 - PGA1_c01090 0.77 +0.8
102,332 - PGA1_c01090 0.79 +0.4
102,372 + PGA1_c01090 0.85 +0.6
102,379 + PGA1_c01090 0.86 +0.8
102,392 - PGA1_c01090 0.87 -0.9
102,519 + PGA1_c01100 0.13 -1.1
102,522 - PGA1_c01100 0.14 -0.4
102,527 + PGA1_c01100 0.15 -3.0
102,535 - PGA1_c01100 0.17 -1.2
102,575 - PGA1_c01100 0.27 +0.9
102,588 + PGA1_c01100 0.30 +1.4
102,596 - PGA1_c01100 0.32 -0.2
102,652 - PGA1_c01100 0.46 -0.7
102,775 + PGA1_c01100 0.76 -0.1
102,838 - +0.1
102,892 - +0.1
102,934 + +1.7
102,986 + +0.0
103,032 + -1.7
103,056 + -0.2
103,090 + -0.1
103,122 + -2.1
103,150 - +0.8
103,150 - +0.3
103,161 + PGA1_c01110 0.11 +3.1
103,162 + PGA1_c01110 0.11 +1.4
103,277 + PGA1_c01110 0.17 +1.4
103,278 - PGA1_c01110 0.17 +0.0
103,279 - PGA1_c01110 0.18 -0.8
103,307 + PGA1_c01110 0.19 -1.0
103,368 - PGA1_c01110 0.23 +0.0
103,386 + PGA1_c01110 0.24 -0.6
103,386 + PGA1_c01110 0.24 +0.2
103,394 - PGA1_c01110 0.24 +0.3
103,394 - PGA1_c01110 0.24 +0.2
103,394 - PGA1_c01110 0.24 +1.2
103,431 - PGA1_c01110 0.27 -0.0
103,436 + PGA1_c01110 0.27 -0.2
103,444 - PGA1_c01110 0.27 +0.7
103,444 - PGA1_c01110 0.27 -1.2
103,446 + PGA1_c01110 0.27 -1.1
103,449 - PGA1_c01110 0.28 +0.9

Or see this region's nucleotide sequence