Experiment: marine broth pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09210 and PGA1_c09220 are separated by 392 nucleotides PGA1_c09220 and PGA1_c09230 are separated by 238 nucleotides PGA1_c09230 and PGA1_c09240 overlap by 4 nucleotides
PGA1_c09210: PGA1_c09210 - hypothetical protein, at 945,240 to 945,803
_c09210
PGA1_c09220: PGA1_c09220 - Predicted CoA-binding protein, at 946,196 to 946,666
_c09220
PGA1_c09230: PGA1_c09230 - phosphoribosyl-ATP pyrophosphatase HisE, at 946,905 to 947,222
_c09230
PGA1_c09240: PGA1_c09240 - imidazole glycerol phosphate synthase subunit HisF, at 947,219 to 947,980
_c09240
Position (kb) 946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 945.221 kb on - strand at 945.292 kb on + strand at 945.298 kb on - strand, within PGA1_c09210 at 945.310 kb on - strand, within PGA1_c09210 at 945.320 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.347 kb on + strand, within PGA1_c09210 at 945.347 kb on - strand, within PGA1_c09210 at 945.347 kb on - strand, within PGA1_c09210 at 945.354 kb on - strand, within PGA1_c09210 at 945.368 kb on - strand, within PGA1_c09210 at 945.549 kb on - strand, within PGA1_c09210 at 945.649 kb on - strand, within PGA1_c09210 at 945.649 kb on - strand, within PGA1_c09210 at 945.701 kb on - strand, within PGA1_c09210 at 945.844 kb on - strand at 945.864 kb on + strand at 945.876 kb on + strand at 945.884 kb on - strand at 946.013 kb on - strand at 946.022 kb on + strand at 946.030 kb on - strand at 946.085 kb on - strand at 946.124 kb on + strand at 946.204 kb on - strand at 946.266 kb on - strand, within PGA1_c09220 at 946.269 kb on + strand, within PGA1_c09220 at 946.329 kb on - strand, within PGA1_c09220 at 946.371 kb on - strand, within PGA1_c09220 at 946.382 kb on + strand, within PGA1_c09220 at 946.451 kb on - strand, within PGA1_c09220 at 946.483 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.528 kb on + strand, within PGA1_c09220 at 946.546 kb on + strand, within PGA1_c09220 at 946.567 kb on - strand, within PGA1_c09220 at 946.616 kb on + strand, within PGA1_c09220 at 946.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH8 remove 945,221 - -1.4 945,292 + +0.8 945,298 - PGA1_c09210 0.10 -0.3 945,310 - PGA1_c09210 0.12 +0.6 945,320 + PGA1_c09210 0.14 -3.1 945,339 + PGA1_c09210 0.18 -0.3 945,339 + PGA1_c09210 0.18 +2.2 945,339 + PGA1_c09210 0.18 +1.2 945,347 + PGA1_c09210 0.19 +1.3 945,347 - PGA1_c09210 0.19 +0.3 945,347 - PGA1_c09210 0.19 -3.4 945,354 - PGA1_c09210 0.20 +1.1 945,368 - PGA1_c09210 0.23 +0.3 945,549 - PGA1_c09210 0.55 +0.5 945,649 - PGA1_c09210 0.73 +0.1 945,649 - PGA1_c09210 0.73 +0.9 945,701 - PGA1_c09210 0.82 +0.4 945,844 - -0.3 945,864 + +2.7 945,876 + +0.6 945,884 - -1.7 946,013 - -0.5 946,022 + +0.1 946,030 - -0.4 946,085 - -0.3 946,124 + +0.5 946,204 - -1.1 946,266 - PGA1_c09220 0.15 -0.6 946,269 + PGA1_c09220 0.15 -0.6 946,329 - PGA1_c09220 0.28 -0.3 946,371 - PGA1_c09220 0.37 +1.1 946,382 + PGA1_c09220 0.39 +0.2 946,451 - PGA1_c09220 0.54 +0.6 946,483 + PGA1_c09220 0.61 -0.6 946,518 + PGA1_c09220 0.68 +0.1 946,518 + PGA1_c09220 0.68 -1.8 946,518 + PGA1_c09220 0.68 +0.8 946,528 + PGA1_c09220 0.70 -0.9 946,546 + PGA1_c09220 0.74 +1.4 946,567 - PGA1_c09220 0.79 -0.8 946,616 + PGA1_c09220 0.89 -1.9 946,878 + +0.6
Or see this region's nucleotide sequence