Experiment: marine broth pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05760 and PGA1_c05770 overlap by 4 nucleotides PGA1_c05770 and PGA1_c05780 are separated by 183 nucleotides PGA1_c05780 and PGA1_c05790 are separated by 148 nucleotides
PGA1_c05760: PGA1_c05760 - putative tyrosine recombinase XerC, at 589,712 to 590,647
_c05760
PGA1_c05770: PGA1_c05770 - Uncharacterized protein conserved in bacteria, at 590,644 to 591,351
_c05770
PGA1_c05780: PGA1_c05780 - transaldolase Tal, at 591,535 to 592,188
_c05780
PGA1_c05790: PGA1_c05790 - primosomal protein N, at 592,337 to 594,532
_c05790
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 589.669 kb on - strand at 589.669 kb on - strand at 589.706 kb on - strand at 589.708 kb on + strand at 589.708 kb on + strand at 589.708 kb on + strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.770 kb on + strand at 589.770 kb on + strand at 589.778 kb on - strand at 589.778 kb on - strand at 589.961 kb on + strand, within PGA1_c05760 at 590.062 kb on - strand, within PGA1_c05760 at 590.124 kb on - strand, within PGA1_c05760 at 590.227 kb on - strand, within PGA1_c05760 at 590.331 kb on - strand, within PGA1_c05760 at 590.467 kb on + strand, within PGA1_c05760 at 590.469 kb on + strand, within PGA1_c05760 at 590.549 kb on + strand, within PGA1_c05760 at 590.557 kb on - strand at 590.564 kb on - strand at 590.705 kb on + strand at 590.713 kb on - strand at 590.949 kb on - strand, within PGA1_c05770 at 590.956 kb on + strand, within PGA1_c05770 at 590.958 kb on + strand, within PGA1_c05770 at 590.971 kb on - strand, within PGA1_c05770 at 590.992 kb on - strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.085 kb on + strand, within PGA1_c05770 at 591.093 kb on - strand, within PGA1_c05770 at 591.110 kb on - strand, within PGA1_c05770 at 591.243 kb on + strand, within PGA1_c05770 at 591.311 kb on + strand at 591.352 kb on - strand at 591.365 kb on - strand at 591.368 kb on + strand at 591.368 kb on + strand at 591.387 kb on + strand at 591.397 kb on - strand at 591.452 kb on + strand at 591.457 kb on + strand at 591.457 kb on + strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.465 kb on - strand at 591.465 kb on - strand at 591.516 kb on - strand at 592.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH8 remove 589,669 - +2.3 589,669 - +0.8 589,706 - -2.7 589,708 + -1.1 589,708 + +0.8 589,708 + +1.2 589,716 - -1.1 589,716 - +0.0 589,716 - +0.2 589,716 - -1.1 589,770 + -0.5 589,770 + -0.5 589,778 - -1.1 589,778 - +1.0 589,961 + PGA1_c05760 0.27 -1.7 590,062 - PGA1_c05760 0.37 -2.9 590,124 - PGA1_c05760 0.44 -1.5 590,227 - PGA1_c05760 0.55 -1.5 590,331 - PGA1_c05760 0.66 -0.8 590,467 + PGA1_c05760 0.81 -0.4 590,469 + PGA1_c05760 0.81 -2.2 590,549 + PGA1_c05760 0.89 -0.5 590,557 - -0.5 590,564 - -1.4 590,705 + -2.9 590,713 - -0.8 590,949 - PGA1_c05770 0.43 -1.1 590,956 + PGA1_c05770 0.44 -0.5 590,958 + PGA1_c05770 0.44 -3.2 590,971 - PGA1_c05770 0.46 -1.6 590,992 - PGA1_c05770 0.49 -1.4 591,038 + PGA1_c05770 0.56 -0.7 591,038 + PGA1_c05770 0.56 -3.5 591,038 + PGA1_c05770 0.56 -1.3 591,085 + PGA1_c05770 0.62 -1.4 591,093 - PGA1_c05770 0.63 +0.1 591,110 - PGA1_c05770 0.66 -1.4 591,243 + PGA1_c05770 0.85 -0.8 591,311 + -1.9 591,352 - -0.8 591,365 - +1.8 591,368 + +0.2 591,368 + -0.7 591,387 + -1.1 591,397 - +0.2 591,452 + -1.0 591,457 + -0.8 591,457 + +0.2 591,460 - +1.0 591,460 - +0.8 591,460 - -0.5 591,460 - +1.0 591,465 - -2.1 591,465 - +1.1 591,516 - +0.8 592,217 - -2.1
Or see this region's nucleotide sequence