Experiment: m.b. Choline Lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3808 and HP15_3809 are separated by 11 nucleotides HP15_3809 and HP15_3810 are separated by 14 nucleotides HP15_3810 and HP15_3811 are separated by 25 nucleotides HP15_3811 and HP15_3812 are separated by 511 nucleotides
HP15_3808: HP15_3808 - multi-sensor hybrid histidine kinase, at 4,033,281 to 4,036,781
_3808
HP15_3809: HP15_3809 - conserved hypothetical protein, membrane, at 4,036,793 to 4,037,371
_3809
HP15_3810: HP15_3810 - response regulator receiver protein, at 4,037,386 to 4,037,799
_3810
HP15_3811: HP15_3811 - conserved hypothetical protein, at 4,037,825 to 4,038,133
_3811
HP15_3812: HP15_3812 - conserved hypothetical protein, membrane, at 4,038,645 to 4,038,884
_3812
Position (kb)
4037
4038 Strain fitness (log2 ratio)
-1
0
1
2 at 4036.403 kb on + strand, within HP15_3808 at 4036.411 kb on - strand, within HP15_3808 at 4036.424 kb on + strand, within HP15_3808 at 4036.442 kb on - strand at 4036.557 kb on - strand at 4036.618 kb on - strand at 4036.669 kb on - strand at 4036.692 kb on + strand at 4036.740 kb on + strand at 4036.752 kb on + strand at 4036.755 kb on - strand at 4036.771 kb on + strand at 4036.916 kb on + strand, within HP15_3809 at 4036.924 kb on + strand, within HP15_3809 at 4036.959 kb on + strand, within HP15_3809 at 4036.964 kb on + strand, within HP15_3809 at 4036.985 kb on + strand, within HP15_3809 at 4036.993 kb on - strand, within HP15_3809 at 4037.335 kb on - strand at 4037.454 kb on + strand, within HP15_3810 at 4037.538 kb on - strand, within HP15_3810 at 4037.556 kb on - strand, within HP15_3810 at 4037.611 kb on - strand, within HP15_3810 at 4037.618 kb on + strand, within HP15_3810 at 4037.779 kb on + strand at 4037.780 kb on + strand at 4037.792 kb on - strand at 4037.803 kb on + strand at 4037.917 kb on - strand, within HP15_3811 at 4038.072 kb on - strand, within HP15_3811 at 4038.200 kb on + strand at 4038.278 kb on + strand at 4038.327 kb on - strand at 4038.345 kb on - strand at 4038.356 kb on + strand at 4038.397 kb on + strand at 4038.504 kb on + strand at 4038.595 kb on + strand at 4038.628 kb on + strand at 4038.628 kb on + strand at 4038.636 kb on - strand at 4038.636 kb on - strand at 4038.703 kb on - strand, within HP15_3812
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM remove 4,036,403 + HP15_3808 0.89 +1.0 4,036,411 - HP15_3808 0.89 -0.4 4,036,424 + HP15_3808 0.90 +0.6 4,036,442 - +0.6 4,036,557 - +0.6 4,036,618 - +0.4 4,036,669 - -0.1 4,036,692 + -0.3 4,036,740 + -0.3 4,036,752 + +0.2 4,036,755 - -1.3 4,036,771 + +1.7 4,036,916 + HP15_3809 0.21 +0.7 4,036,924 + HP15_3809 0.23 +0.3 4,036,959 + HP15_3809 0.29 -0.3 4,036,964 + HP15_3809 0.30 -0.7 4,036,985 + HP15_3809 0.33 +0.2 4,036,993 - HP15_3809 0.35 +0.7 4,037,335 - +0.5 4,037,454 + HP15_3810 0.16 -0.5 4,037,538 - HP15_3810 0.37 +0.9 4,037,556 - HP15_3810 0.41 -0.2 4,037,611 - HP15_3810 0.54 +0.1 4,037,618 + HP15_3810 0.56 +2.3 4,037,779 + +1.1 4,037,780 + +0.0 4,037,792 - +0.2 4,037,803 + +0.4 4,037,917 - HP15_3811 0.30 +0.0 4,038,072 - HP15_3811 0.80 -1.1 4,038,200 + +0.4 4,038,278 + +0.3 4,038,327 - +0.6 4,038,345 - +0.2 4,038,356 + +0.1 4,038,397 + -0.5 4,038,504 + +0.7 4,038,595 + +0.7 4,038,628 + -1.4 4,038,628 + +0.1 4,038,636 - -1.7 4,038,636 - -0.8 4,038,703 - HP15_3812 0.24 +1.7
Or see this region's nucleotide sequence