Experiment: marine broth pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03930 and PGA1_c03940 are separated by 234 nucleotides PGA1_c03940 and PGA1_c03950 are separated by 128 nucleotides
PGA1_c03930: PGA1_c03930 - Predicted permeases, at 379,540 to 380,463
_c03930
PGA1_c03940: PGA1_c03940 - putative permease protein, at 380,698 to 381,534
_c03940
PGA1_c03950: PGA1_c03950 - putative permease protein, at 381,663 to 382,757
_c03950
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 379.750 kb on + strand, within PGA1_c03930 at 379.826 kb on - strand, within PGA1_c03930 at 379.929 kb on - strand, within PGA1_c03930 at 379.934 kb on - strand, within PGA1_c03930 at 379.963 kb on - strand, within PGA1_c03930 at 380.125 kb on - strand, within PGA1_c03930 at 380.234 kb on - strand, within PGA1_c03930 at 380.468 kb on + strand at 380.468 kb on + strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.614 kb on - strand at 380.638 kb on - strand at 380.665 kb on + strand at 380.665 kb on + strand at 380.716 kb on + strand at 380.716 kb on + strand at 380.729 kb on + strand at 380.777 kb on + strand at 380.783 kb on + strand, within PGA1_c03940 at 380.803 kb on + strand, within PGA1_c03940 at 380.861 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.968 kb on - strand, within PGA1_c03940 at 380.980 kb on + strand, within PGA1_c03940 at 381.110 kb on - strand, within PGA1_c03940 at 381.179 kb on + strand, within PGA1_c03940 at 381.183 kb on - strand, within PGA1_c03940 at 381.188 kb on + strand, within PGA1_c03940 at 381.276 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.298 kb on - strand, within PGA1_c03940 at 381.314 kb on - strand, within PGA1_c03940 at 381.326 kb on + strand, within PGA1_c03940 at 381.339 kb on - strand, within PGA1_c03940 at 381.352 kb on + strand, within PGA1_c03940 at 381.391 kb on - strand, within PGA1_c03940 at 381.514 kb on + strand at 381.560 kb on + strand at 381.577 kb on + strand at 381.585 kb on - strand at 381.639 kb on - strand at 381.651 kb on - strand at 381.681 kb on - strand at 381.683 kb on + strand at 381.691 kb on - strand at 381.717 kb on - strand at 381.717 kb on - strand at 381.741 kb on - strand at 381.854 kb on + strand, within PGA1_c03950 at 381.881 kb on - strand, within PGA1_c03950 at 381.895 kb on - strand, within PGA1_c03950 at 381.961 kb on - strand, within PGA1_c03950 at 382.012 kb on - strand, within PGA1_c03950 at 382.250 kb on - strand, within PGA1_c03950 at 382.314 kb on - strand, within PGA1_c03950 at 382.345 kb on - strand, within PGA1_c03950 at 382.359 kb on - strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.413 kb on - strand, within PGA1_c03950 at 382.475 kb on + strand, within PGA1_c03950 at 382.483 kb on - strand, within PGA1_c03950 at 382.488 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH8 remove 379,750 + PGA1_c03930 0.23 -2.6 379,826 - PGA1_c03930 0.31 -2.3 379,929 - PGA1_c03930 0.42 +1.1 379,934 - PGA1_c03930 0.43 -0.4 379,963 - PGA1_c03930 0.46 -2.6 380,125 - PGA1_c03930 0.63 -0.6 380,234 - PGA1_c03930 0.75 -2.1 380,468 + -1.5 380,468 + -1.7 380,476 - +1.1 380,476 - -3.3 380,476 - -0.1 380,476 - +1.2 380,476 - +0.2 380,614 - -1.2 380,638 - -1.9 380,665 + -2.7 380,665 + +0.5 380,716 + -2.6 380,716 + +0.4 380,729 + -2.9 380,777 + -1.0 380,783 + PGA1_c03940 0.10 -0.6 380,803 + PGA1_c03940 0.13 -0.6 380,861 + PGA1_c03940 0.19 -0.7 380,960 + PGA1_c03940 0.31 -0.7 380,960 + PGA1_c03940 0.31 -0.3 380,968 - PGA1_c03940 0.32 -0.4 380,980 + PGA1_c03940 0.34 -3.0 381,110 - PGA1_c03940 0.49 +1.1 381,179 + PGA1_c03940 0.57 -0.3 381,183 - PGA1_c03940 0.58 -1.2 381,188 + PGA1_c03940 0.59 -0.6 381,276 + PGA1_c03940 0.69 -0.7 381,290 + PGA1_c03940 0.71 -1.4 381,290 + PGA1_c03940 0.71 -0.5 381,298 - PGA1_c03940 0.72 +0.3 381,314 - PGA1_c03940 0.74 -1.1 381,326 + PGA1_c03940 0.75 +0.2 381,339 - PGA1_c03940 0.77 +0.4 381,352 + PGA1_c03940 0.78 +0.8 381,391 - PGA1_c03940 0.83 +1.8 381,514 + +0.2 381,560 + -1.3 381,577 + -0.7 381,585 - -0.2 381,639 - -0.5 381,651 - -1.8 381,681 - +0.1 381,683 + -0.7 381,691 - -1.0 381,717 - -0.3 381,717 - +0.9 381,741 - -0.2 381,854 + PGA1_c03950 0.17 -1.9 381,881 - PGA1_c03950 0.20 -0.6 381,895 - PGA1_c03950 0.21 -2.4 381,961 - PGA1_c03950 0.27 -1.6 382,012 - PGA1_c03950 0.32 +0.6 382,250 - PGA1_c03950 0.54 -0.1 382,314 - PGA1_c03950 0.59 -1.0 382,345 - PGA1_c03950 0.62 -2.8 382,359 - PGA1_c03950 0.64 -0.0 382,390 + PGA1_c03950 0.66 -0.3 382,390 + PGA1_c03950 0.66 -0.3 382,390 + PGA1_c03950 0.66 -1.1 382,390 + PGA1_c03950 0.66 +0.9 382,390 + PGA1_c03950 0.66 -1.7 382,390 + PGA1_c03950 0.66 +1.5 382,390 + PGA1_c03950 0.66 -2.4 382,390 + PGA1_c03950 0.66 +0.3 382,390 + PGA1_c03950 0.66 +0.4 382,413 - PGA1_c03950 0.68 +0.5 382,475 + PGA1_c03950 0.74 +0.5 382,483 - PGA1_c03950 0.75 +2.6 382,488 + PGA1_c03950 0.75 +0.6 382,494 + PGA1_c03950 0.76 -2.4 382,494 + PGA1_c03950 0.76 -0.9
Or see this region's nucleotide sequence