Experiment: marine broth pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01530 and PGA1_262p01540 are separated by 117 nucleotides PGA1_262p01540 and PGA1_262p01550 are separated by 56 nucleotides
PGA1_262p01530: PGA1_262p01530 - transcriptional regulator, GntR family, at 167,879 to 169,348
_262p01530
PGA1_262p01540: PGA1_262p01540 - putative enoyl-CoA hydratase / isomerase, at 169,466 to 170,272
_262p01540
PGA1_262p01550: PGA1_262p01550 - acyl-CoA dehydrogenase, at 170,329 to 172,101
_262p01550
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 168.596 kb on - strand, within PGA1_262p01530 at 168.671 kb on + strand, within PGA1_262p01530 at 168.694 kb on - strand, within PGA1_262p01530 at 168.706 kb on + strand, within PGA1_262p01530 at 168.706 kb on - strand, within PGA1_262p01530 at 168.794 kb on + strand, within PGA1_262p01530 at 168.867 kb on + strand, within PGA1_262p01530 at 168.907 kb on - strand, within PGA1_262p01530 at 169.020 kb on + strand, within PGA1_262p01530 at 169.020 kb on + strand, within PGA1_262p01530 at 169.030 kb on + strand, within PGA1_262p01530 at 169.125 kb on - strand, within PGA1_262p01530 at 169.163 kb on - strand, within PGA1_262p01530 at 169.185 kb on + strand, within PGA1_262p01530 at 169.221 kb on - strand at 169.316 kb on - strand at 169.845 kb on + strand, within PGA1_262p01540 at 169.907 kb on + strand, within PGA1_262p01540 at 169.974 kb on - strand, within PGA1_262p01540 at 169.984 kb on + strand, within PGA1_262p01540 at 169.992 kb on - strand, within PGA1_262p01540 at 170.188 kb on + strand, within PGA1_262p01540 at 170.224 kb on - strand at 170.237 kb on + strand at 170.245 kb on - strand at 170.245 kb on - strand at 170.335 kb on - strand at 170.467 kb on - strand at 170.541 kb on + strand, within PGA1_262p01550 at 170.667 kb on + strand, within PGA1_262p01550 at 170.860 kb on + strand, within PGA1_262p01550 at 170.898 kb on + strand, within PGA1_262p01550 at 170.963 kb on + strand, within PGA1_262p01550 at 171.008 kb on - strand, within PGA1_262p01550 at 171.089 kb on - strand, within PGA1_262p01550 at 171.147 kb on - strand, within PGA1_262p01550 at 171.163 kb on - strand, within PGA1_262p01550 at 171.163 kb on - strand, within PGA1_262p01550 at 171.168 kb on - strand, within PGA1_262p01550 at 171.227 kb on + strand, within PGA1_262p01550 at 171.227 kb on + strand, within PGA1_262p01550
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH8 remove 168,596 - PGA1_262p01530 0.49 -0.6 168,671 + PGA1_262p01530 0.54 +0.7 168,694 - PGA1_262p01530 0.55 -1.8 168,706 + PGA1_262p01530 0.56 -1.3 168,706 - PGA1_262p01530 0.56 +0.6 168,794 + PGA1_262p01530 0.62 -0.6 168,867 + PGA1_262p01530 0.67 -1.1 168,907 - PGA1_262p01530 0.70 -0.6 169,020 + PGA1_262p01530 0.78 -0.3 169,020 + PGA1_262p01530 0.78 +0.7 169,030 + PGA1_262p01530 0.78 -3.5 169,125 - PGA1_262p01530 0.85 +0.4 169,163 - PGA1_262p01530 0.87 +1.8 169,185 + PGA1_262p01530 0.89 -0.0 169,221 - +0.3 169,316 - -0.4 169,845 + PGA1_262p01540 0.47 -0.1 169,907 + PGA1_262p01540 0.55 +1.2 169,974 - PGA1_262p01540 0.63 -0.5 169,984 + PGA1_262p01540 0.64 +1.5 169,992 - PGA1_262p01540 0.65 +1.3 170,188 + PGA1_262p01540 0.89 -1.3 170,224 - -0.2 170,237 + -0.5 170,245 - -0.9 170,245 - +0.5 170,335 - +0.4 170,467 - -1.4 170,541 + PGA1_262p01550 0.12 +0.5 170,667 + PGA1_262p01550 0.19 -0.1 170,860 + PGA1_262p01550 0.30 -0.5 170,898 + PGA1_262p01550 0.32 +0.2 170,963 + PGA1_262p01550 0.36 +0.5 171,008 - PGA1_262p01550 0.38 +1.9 171,089 - PGA1_262p01550 0.43 +0.2 171,147 - PGA1_262p01550 0.46 -0.9 171,163 - PGA1_262p01550 0.47 -0.5 171,163 - PGA1_262p01550 0.47 +0.8 171,168 - PGA1_262p01550 0.47 -0.3 171,227 + PGA1_262p01550 0.51 -0.1 171,227 + PGA1_262p01550 0.51 +0.9
Or see this region's nucleotide sequence