Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35850

Experiment: marine broth pH8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH8
3,754,248	-		PGA1_c35840	0.88	-1.4
3,754,248	-		PGA1_c35840	0.88	-0.1
3,754,248	-		PGA1_c35840	0.88	-1.0
3,754,248	-		PGA1_c35840	0.88	-0.7
3,754,257	+		PGA1_c35840	0.88	-1.2
3,754,295	-				-0.1
3,754,295	-				+0.5
3,754,295	-				-0.2
3,754,297	+				-2.6
3,754,302	+				-1.0
3,754,315	-				+0.0
3,754,334	+				-2.0
3,754,342	-				+0.4
3,754,343	+				-0.5
3,754,351	+				-1.0
3,754,351	+				-0.3
3,754,359	-				+0.4
3,754,359	-				-1.2
3,754,411	+				-0.6
3,754,455	-				-0.1
3,754,460	+				+0.9
3,754,513	+				+1.2
3,754,521	-				-0.0
3,754,533	+				-1.1
3,754,560	+				-2.1
3,754,560	+				-0.0
3,754,560	+				-2.2
3,754,560	+				-0.3
3,754,568	-				-1.1
3,754,622	+				+0.7
3,754,635	+				-1.1
3,754,750	-				+0.6
3,754,752	+				-0.3
3,754,755	-				+1.2
3,754,785	+				+0.9
3,754,789	+				-0.2
3,754,794	+				-0.4
3,754,795	+				-1.0
3,754,797	-				-2.6
3,754,800	+				+0.7
3,754,800	+				+0.6
3,754,800	+				-2.9
3,754,800	+				-1.1
3,754,808	-				-2.0
3,754,827	-				-1.7
3,754,832	-				-0.2
3,754,832	-				+0.1
3,754,832	-				-0.0
3,754,895	+				-1.2
3,754,966	-				+1.2
3,754,966	-				-0.4
3,754,968	+				-0.6
3,754,968	+				+0.4
3,754,973	-				-0.4
3,754,973	-				-0.2
3,754,974	-				-0.1
3,754,976	+				+1.4
3,754,978	+				+0.8
3,754,978	-				+0.4
3,754,986	-				+0.8
3,754,986	-				+0.4
3,754,992	+				+0.7
3,754,995	+				+1.0
3,755,000	-				-0.5
3,755,000	-				-3.3
3,755,063	-				-1.4
3,755,072	+				-0.1
3,755,079	+				+1.5
3,755,080	-				-2.2
3,755,087	-				-0.5
3,755,089	+				+0.5
3,755,089	+				+0.4
3,755,097	-				-0.6
3,755,124	+				+1.1
3,755,158	+				+1.4
3,755,158	+				+1.7
3,755,158	+				+0.8
3,755,158	+				+0.9
3,755,166	-				-0.8
3,755,168	+				-0.5
3,755,168	+				-1.1
3,755,168	+				+0.3
3,755,171	+				+0.1
3,755,176	-				-0.4
3,755,176	-				+0.7
3,755,176	-				+0.6
3,755,178	+				+1.1
3,755,178	+				-1.7
3,755,178	+				-1.7
3,755,186	-				+0.4
3,755,186	-				-1.6
3,755,186	-				-0.6
3,755,186	-				-0.2
3,755,186	-				+0.1
3,755,188	+				-2.6
3,755,188	+				-0.2
3,755,188	+				-0.5
3,755,188	+				+0.4
3,755,188	+				+0.5
3,755,188	+				+0.0
3,755,188	+				-0.7
3,755,188	+				-2.7
3,755,191	-				-0.4
3,755,193	+				-0.6
3,755,196	-				-2.1
3,755,196	-				+0.1
3,755,196	-				+1.4
3,755,196	-				+1.0
3,755,196	-				-1.2
3,755,196	-				-0.4
3,755,196	-				+1.0
3,755,196	-				-1.2
3,755,196	-				+0.9
3,755,196	-				-1.0
3,755,196	-				+0.2
3,755,196	-				+0.6
3,755,196	-				+1.8
3,755,196	-				-1.4
3,755,196	-				-0.8
3,755,196	-				+0.7
3,755,196	-				+0.6
3,755,196	-				+0.5
3,755,196	-				+0.4
3,755,196	-				+0.8
3,755,196	-				-1.1
3,755,196	-				-2.1
3,755,196	-				+0.8
3,755,198	+				+0.4
3,755,246	+				+0.0
3,755,246	-				+0.7
3,755,271	-				+0.5
3,755,285	+				-1.0
3,755,293	-		PGA1_c35850	0.11	+0.1
3,755,311	+		PGA1_c35850	0.16	-0.4
3,755,357	+		PGA1_c35850	0.27	+0.1
3,755,359	-		PGA1_c35850	0.28	-1.6
3,755,370	+		PGA1_c35850	0.30	-0.5
3,755,557	-		PGA1_c35850	0.77	-1.8
3,755,579	-		PGA1_c35850	0.82	-4.0
3,755,607	-		PGA1_c35850	0.89	+0.0
3,755,613	-				-0.3
3,755,644	-				+0.4
3,755,649	+				+0.8
3,755,682	-				-0.1
3,755,682	-				+0.2
3,755,729	+		PGA1_c35860	0.20	+1.1
3,755,729	+		PGA1_c35860	0.20	-0.2
3,755,729	+		PGA1_c35860	0.20	+0.1
3,755,729	+		PGA1_c35860	0.20	-0.1
3,755,729	+		PGA1_c35860	0.20	+3.4
3,755,729	+		PGA1_c35860	0.20	-2.2
3,755,729	+		PGA1_c35860	0.20	-0.4
3,755,734	+		PGA1_c35860	0.22	-0.8
3,755,737	-		PGA1_c35860	0.22	-2.4
3,755,737	-		PGA1_c35860	0.22	-2.4
3,755,737	-		PGA1_c35860	0.22	+1.7
3,755,737	-		PGA1_c35860	0.22	+0.9
3,755,737	-		PGA1_c35860	0.22	-0.2
3,755,737	-		PGA1_c35860	0.22	-2.4
3,755,737	-		PGA1_c35860	0.22	-1.3
3,755,757	-		PGA1_c35860	0.28	+0.0
3,755,757	-		PGA1_c35860	0.28	-1.0
3,755,769	+		PGA1_c35860	0.31	-1.1
3,755,777	-		PGA1_c35860	0.33	-0.9
3,755,795	+		PGA1_c35860	0.38	+0.7
3,755,874	-		PGA1_c35860	0.59	+0.2
3,755,874	-		PGA1_c35860	0.59	+0.5
3,755,918	-		PGA1_c35860	0.71	-1.1
3,755,927	+		PGA1_c35860	0.73	-1.4
3,755,936	+		PGA1_c35860	0.76	-1.6
3,755,944	-		PGA1_c35860	0.78	-1.6
3,755,973	+		PGA1_c35860	0.86	-2.2
3,756,000	+				+1.4
3,756,033	-				-1.0
3,756,076	-				-0.1
3,756,158	+				-0.8
3,756,258	+		PGA1_c35870	0.19	+0.4
3,756,268	-		PGA1_c35870	0.20	-0.3
3,756,279	+		PGA1_c35870	0.21	-0.0
3,756,287	-		PGA1_c35870	0.22	-0.5
3,756,289	+		PGA1_c35870	0.22	-0.6
3,756,310	-		PGA1_c35870	0.25	-2.1
3,756,317	+		PGA1_c35870	0.26	+2.9
3,756,373	-		PGA1_c35870	0.33	-2.1
3,756,382	-		PGA1_c35870	0.34	-1.2
3,756,384	+		PGA1_c35870	0.34	+1.0
3,756,407	+		PGA1_c35870	0.37	-0.7
3,756,412	+		PGA1_c35870	0.38	-1.2
3,756,417	+		PGA1_c35870	0.38	-3.5
3,756,425	-		PGA1_c35870	0.39	-1.2
3,756,425	-		PGA1_c35870	0.39	+1.0
3,756,451	+		PGA1_c35870	0.42	+0.9
3,756,459	-		PGA1_c35870	0.43	-0.0
3,756,459	-		PGA1_c35870	0.43	-1.1
3,756,459	-		PGA1_c35870	0.43	-1.6
3,756,471	-		PGA1_c35870	0.45	-0.7
3,756,476	-		PGA1_c35870	0.45	-1.0
3,756,482	+		PGA1_c35870	0.46	+0.6
3,756,490	-		PGA1_c35870	0.47	+0.8
3,756,490	-		PGA1_c35870	0.47	-0.8
3,756,509	-		PGA1_c35870	0.49	+2.5
3,756,523	+		PGA1_c35870	0.51	-0.3
3,756,523	+		PGA1_c35870	0.51	-3.3
3,756,531	-		PGA1_c35870	0.52	-1.0
3,756,546	-		PGA1_c35870	0.54	-1.2
3,756,607	+		PGA1_c35870	0.62	-3.7
3,756,615	-		PGA1_c35870	0.62	+0.4
3,756,615	-		PGA1_c35870	0.62	-0.4
3,756,643	+		PGA1_c35870	0.66	+0.2