Experiment: marine broth pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03510 and PGA1_c03520 overlap by 4 nucleotides PGA1_c03520 and PGA1_c03530 overlap by 23 nucleotides PGA1_c03530 and PGA1_c03540 are separated by 78 nucleotides PGA1_c03540 and PGA1_c03550 are separated by 120 nucleotides
PGA1_c03510: PGA1_c03510 - protein insertion permease FtsX-like protein, at 338,667 to 339,566
_c03510
PGA1_c03520: PGA1_c03520 - putative acyltransferase, at 339,563 to 340,312
_c03520
PGA1_c03530: PGA1_c03530 - pyridoxamine 5'-phosphate oxidase-like protein, at 340,290 to 340,895
_c03530
PGA1_c03540: PGA1_c03540 - conserved hypothetical protein, at 340,974 to 341,288
_c03540
PGA1_c03550: PGA1_c03550 - dihydrolipoyl dehydrogenase 2, at 341,409 to 342,806
_c03550
Position (kb) 340
341 Strain fitness (log2 ratio) -1
0
1
2
3 at 339.332 kb on - strand, within PGA1_c03510 at 339.339 kb on - strand, within PGA1_c03510 at 339.362 kb on + strand, within PGA1_c03510 at 339.375 kb on - strand, within PGA1_c03510 at 339.387 kb on - strand, within PGA1_c03510 at 339.395 kb on + strand, within PGA1_c03510 at 339.485 kb on + strand at 340.279 kb on - strand at 340.336 kb on + strand at 340.344 kb on - strand at 340.355 kb on + strand, within PGA1_c03530 at 340.363 kb on - strand, within PGA1_c03530 at 340.432 kb on - strand, within PGA1_c03530 at 340.437 kb on - strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.648 kb on + strand, within PGA1_c03530 at 340.665 kb on + strand, within PGA1_c03530 at 340.755 kb on + strand, within PGA1_c03530 at 340.798 kb on + strand, within PGA1_c03530 at 340.831 kb on + strand, within PGA1_c03530 at 340.896 kb on + strand at 340.897 kb on + strand at 340.899 kb on - strand at 340.902 kb on + strand at 340.930 kb on + strand at 340.936 kb on - strand at 340.956 kb on + strand at 340.956 kb on + strand at 340.980 kb on + strand at 340.988 kb on - strand at 340.988 kb on - strand at 340.989 kb on - strand at 341.076 kb on - strand, within PGA1_c03540 at 341.162 kb on + strand, within PGA1_c03540 at 341.168 kb on - strand, within PGA1_c03540 at 341.170 kb on + strand, within PGA1_c03540 at 341.170 kb on - strand, within PGA1_c03540 at 341.257 kb on - strand at 341.268 kb on - strand at 341.268 kb on - strand at 341.270 kb on + strand at 341.278 kb on - strand at 341.278 kb on - strand at 341.278 kb on - strand at 341.320 kb on + strand at 341.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH8 remove 339,332 - PGA1_c03510 0.74 +1.1 339,339 - PGA1_c03510 0.75 -0.7 339,362 + PGA1_c03510 0.77 -0.3 339,375 - PGA1_c03510 0.79 +0.3 339,387 - PGA1_c03510 0.80 +0.9 339,395 + PGA1_c03510 0.81 +0.2 339,485 + -0.3 340,279 - -0.3 340,336 + +0.7 340,344 - +0.5 340,355 + PGA1_c03530 0.11 +0.5 340,363 - PGA1_c03530 0.12 -0.3 340,432 - PGA1_c03530 0.23 -1.7 340,437 - PGA1_c03530 0.24 +1.5 340,504 + PGA1_c03530 0.35 -1.3 340,504 + PGA1_c03530 0.35 -0.1 340,504 + PGA1_c03530 0.35 +2.0 340,512 - PGA1_c03530 0.37 +0.8 340,512 - PGA1_c03530 0.37 +1.3 340,512 - PGA1_c03530 0.37 -0.6 340,648 + PGA1_c03530 0.59 -0.3 340,665 + PGA1_c03530 0.62 +2.0 340,755 + PGA1_c03530 0.77 -1.7 340,798 + PGA1_c03530 0.84 -0.1 340,831 + PGA1_c03530 0.89 +1.6 340,896 + +0.0 340,897 + +0.0 340,899 - +1.3 340,902 + +0.8 340,930 + -0.5 340,936 - +0.3 340,956 + -0.3 340,956 + +0.1 340,980 + -1.5 340,988 - +0.9 340,988 - -1.4 340,989 - -0.4 341,076 - PGA1_c03540 0.32 +1.3 341,162 + PGA1_c03540 0.60 +0.3 341,168 - PGA1_c03540 0.62 +3.1 341,170 + PGA1_c03540 0.62 +0.1 341,170 - PGA1_c03540 0.62 +1.1 341,257 - -0.7 341,268 - +0.1 341,268 - +0.7 341,270 + -0.4 341,278 - -0.3 341,278 - -0.7 341,278 - -0.2 341,320 + +0.3 341,329 - +0.3
Or see this region's nucleotide sequence