Strain Fitness in Marinobacter adhaerens HP15 around HP15_3356

Experiment: m.b. Choline Lysine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3355 and HP15_3356 overlap by 4 nucleotidesHP15_3356 and HP15_3357 are separated by 234 nucleotides HP15_3355: HP15_3355 - multi-sensor signal transduction histidine kinase, at 3,516,638 to 3,517,957 _3355 HP15_3356: HP15_3356 - response regulator receiver protein, at 3,517,954 to 3,518,823 _3356 HP15_3357: HP15_3357 - peptidoglycan binding domain protein, at 3,519,058 to 3,520,308 _3357 Position (kb) 3517 3518 3519Strain fitness (log2 ratio) -1 0 1at 3517.062 kb on + strand, within HP15_3355at 3517.216 kb on + strand, within HP15_3355at 3517.294 kb on + strand, within HP15_3355at 3517.417 kb on - strand, within HP15_3355at 3517.644 kb on + strand, within HP15_3355at 3517.743 kb on - strand, within HP15_3355at 3518.244 kb on - strand, within HP15_3356at 3518.257 kb on + strand, within HP15_3356at 3518.271 kb on - strand, within HP15_3356at 3518.279 kb on + strand, within HP15_3356at 3518.298 kb on + strand, within HP15_3356at 3518.315 kb on - strand, within HP15_3356at 3518.347 kb on - strand, within HP15_3356at 3518.347 kb on - strand, within HP15_3356at 3518.357 kb on + strand, within HP15_3356at 3518.831 kb on + strandat 3518.831 kb on + strandat 3518.973 kb on + strandat 3518.981 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM
remove
3,517,062 + HP15_3355 0.32 +0.6
3,517,216 + HP15_3355 0.44 -1.6
3,517,294 + HP15_3355 0.50 +0.3
3,517,417 - HP15_3355 0.59 +0.4
3,517,644 + HP15_3355 0.76 -0.2
3,517,743 - HP15_3355 0.84 +0.8
3,518,244 - HP15_3356 0.33 +0.5
3,518,257 + HP15_3356 0.35 -0.1
3,518,271 - HP15_3356 0.36 -1.1
3,518,279 + HP15_3356 0.37 -0.4
3,518,298 + HP15_3356 0.40 +0.1
3,518,315 - HP15_3356 0.41 -0.1
3,518,347 - HP15_3356 0.45 +0.1
3,518,347 - HP15_3356 0.45 +1.1
3,518,357 + HP15_3356 0.46 -0.7
3,518,831 + +0.7
3,518,831 + -0.6
3,518,973 + +1.0
3,518,981 - -0.3

Or see this region's nucleotide sequence