Experiment: marine broth pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03490 and PGA1_c03500 are separated by 218 nucleotides PGA1_c03500 and PGA1_c03510 overlap by 4 nucleotides PGA1_c03510 and PGA1_c03520 overlap by 4 nucleotides PGA1_c03520 and PGA1_c03530 overlap by 23 nucleotides
PGA1_c03490: PGA1_c03490 - hypothetical protein, at 336,893 to 337,774
_c03490
PGA1_c03500: PGA1_c03500 - putative cell division ATP-binding protein FtsE, at 337,993 to 338,670
_c03500
PGA1_c03510: PGA1_c03510 - protein insertion permease FtsX-like protein, at 338,667 to 339,566
_c03510
PGA1_c03520: PGA1_c03520 - putative acyltransferase, at 339,563 to 340,312
_c03520
PGA1_c03530: PGA1_c03530 - pyridoxamine 5'-phosphate oxidase-like protein, at 340,290 to 340,895
_c03530
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 337.719 kb on - strand at 337.776 kb on + strand at 337.783 kb on - strand at 337.876 kb on + strand at 337.893 kb on + strand at 337.893 kb on + strand at 337.901 kb on - strand at 337.901 kb on - strand at 337.914 kb on + strand at 337.922 kb on - strand at 337.928 kb on - strand at 337.937 kb on + strand at 338.043 kb on - strand at 338.097 kb on + strand, within PGA1_c03500 at 338.268 kb on + strand, within PGA1_c03500 at 338.295 kb on + strand, within PGA1_c03500 at 338.309 kb on - strand, within PGA1_c03500 at 338.570 kb on + strand, within PGA1_c03500 at 338.589 kb on - strand, within PGA1_c03500 at 338.594 kb on - strand, within PGA1_c03500 at 338.594 kb on - strand, within PGA1_c03500 at 338.613 kb on + strand at 338.613 kb on + strand at 338.652 kb on + strand at 338.652 kb on + strand at 338.676 kb on + strand at 338.711 kb on + strand at 338.855 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.988 kb on - strand, within PGA1_c03510 at 339.056 kb on + strand, within PGA1_c03510 at 339.143 kb on - strand, within PGA1_c03510 at 339.156 kb on + strand, within PGA1_c03510 at 339.164 kb on - strand, within PGA1_c03510 at 339.164 kb on - strand, within PGA1_c03510 at 339.332 kb on - strand, within PGA1_c03510 at 339.339 kb on - strand, within PGA1_c03510 at 339.362 kb on + strand, within PGA1_c03510 at 339.375 kb on - strand, within PGA1_c03510 at 339.387 kb on - strand, within PGA1_c03510 at 339.395 kb on + strand, within PGA1_c03510 at 339.485 kb on + strand at 340.279 kb on - strand at 340.336 kb on + strand at 340.344 kb on - strand at 340.355 kb on + strand, within PGA1_c03530 at 340.363 kb on - strand, within PGA1_c03530 at 340.432 kb on - strand, within PGA1_c03530 at 340.437 kb on - strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH8 remove 337,719 - -0.7 337,776 + +0.6 337,783 - +1.4 337,876 + -0.3 337,893 + -0.3 337,893 + -2.0 337,901 - +1.6 337,901 - +1.4 337,914 + +2.7 337,922 - -0.5 337,928 - +0.2 337,937 + -0.1 338,043 - +0.1 338,097 + PGA1_c03500 0.15 -0.7 338,268 + PGA1_c03500 0.41 -1.2 338,295 + PGA1_c03500 0.45 -1.7 338,309 - PGA1_c03500 0.47 +1.3 338,570 + PGA1_c03500 0.85 -2.5 338,589 - PGA1_c03500 0.88 +2.3 338,594 - PGA1_c03500 0.89 +0.9 338,594 - PGA1_c03500 0.89 +0.0 338,613 + -0.3 338,613 + +0.6 338,652 + -0.4 338,652 + -0.7 338,676 + +0.6 338,711 + -1.9 338,855 - PGA1_c03510 0.21 -1.9 338,909 - PGA1_c03510 0.27 +0.5 338,909 - PGA1_c03510 0.27 +0.1 338,909 - PGA1_c03510 0.27 -0.2 338,909 - PGA1_c03510 0.27 +0.6 338,909 - PGA1_c03510 0.27 -0.1 338,988 - PGA1_c03510 0.36 +0.5 339,056 + PGA1_c03510 0.43 -0.1 339,143 - PGA1_c03510 0.53 -0.2 339,156 + PGA1_c03510 0.54 +5.9 339,164 - PGA1_c03510 0.55 +0.9 339,164 - PGA1_c03510 0.55 +0.3 339,332 - PGA1_c03510 0.74 +1.1 339,339 - PGA1_c03510 0.75 -0.7 339,362 + PGA1_c03510 0.77 -0.3 339,375 - PGA1_c03510 0.79 +0.3 339,387 - PGA1_c03510 0.80 +0.9 339,395 + PGA1_c03510 0.81 +0.2 339,485 + -0.3 340,279 - -0.3 340,336 + +0.7 340,344 - +0.5 340,355 + PGA1_c03530 0.11 +0.5 340,363 - PGA1_c03530 0.12 -0.3 340,432 - PGA1_c03530 0.23 -1.7 340,437 - PGA1_c03530 0.24 +1.5 340,504 + PGA1_c03530 0.35 -1.3 340,504 + PGA1_c03530 0.35 -0.1 340,504 + PGA1_c03530 0.35 +2.0 340,512 - PGA1_c03530 0.37 +0.8 340,512 - PGA1_c03530 0.37 +1.3 340,512 - PGA1_c03530 0.37 -0.6
Or see this region's nucleotide sequence