Strain Fitness in Marinobacter adhaerens HP15 around HP15_3091

Experiment: m.b. Choline Lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3089 and HP15_3090 are separated by 266 nucleotidesHP15_3090 and HP15_3091 are separated by 191 nucleotidesHP15_3091 and HP15_3092 are separated by 495 nucleotides HP15_3089: HP15_3089 - sodium-dependent transporter family protein, at 3,243,262 to 3,244,821 _3089 HP15_3090: HP15_3090 - SsrA-binding protein, at 3,245,088 to 3,245,567 _3090 HP15_3091: HP15_3091 - acyltransferase, WS/DGAT/MGAT, at 3,245,759 to 3,247,126 _3091 HP15_3092: HP15_3092 - conserved hypothetical protein, at 3,247,622 to 3,248,755 _3092 Position (kb) 3245 3246 3247 3248Strain fitness (log2 ratio) -2 -1 0 1at 3244.776 kb on + strandat 3244.812 kb on - strandat 3244.819 kb on - strandat 3245.014 kb on + strandat 3245.030 kb on + strandat 3245.636 kb on - strandat 3245.655 kb on + strandat 3245.795 kb on + strandat 3245.812 kb on - strandat 3245.842 kb on - strandat 3245.849 kb on - strandat 3245.946 kb on - strand, within HP15_3091at 3245.976 kb on - strand, within HP15_3091at 3246.089 kb on + strand, within HP15_3091at 3246.181 kb on + strand, within HP15_3091at 3246.238 kb on - strand, within HP15_3091at 3246.251 kb on + strand, within HP15_3091at 3246.251 kb on + strand, within HP15_3091at 3246.251 kb on + strand, within HP15_3091at 3246.251 kb on + strand, within HP15_3091at 3246.259 kb on - strand, within HP15_3091at 3246.354 kb on + strand, within HP15_3091at 3246.354 kb on + strand, within HP15_3091at 3246.377 kb on - strand, within HP15_3091at 3246.398 kb on + strand, within HP15_3091at 3246.406 kb on - strand, within HP15_3091at 3246.447 kb on + strand, within HP15_3091at 3246.450 kb on - strand, within HP15_3091at 3246.486 kb on - strand, within HP15_3091at 3246.491 kb on + strand, within HP15_3091at 3246.499 kb on - strand, within HP15_3091at 3246.499 kb on - strand, within HP15_3091at 3246.523 kb on - strand, within HP15_3091at 3246.538 kb on - strand, within HP15_3091at 3246.583 kb on - strand, within HP15_3091at 3246.588 kb on + strand, within HP15_3091at 3246.621 kb on + strand, within HP15_3091at 3246.621 kb on + strand, within HP15_3091at 3246.621 kb on + strand, within HP15_3091at 3246.621 kb on + strand, within HP15_3091at 3246.629 kb on - strand, within HP15_3091at 3246.629 kb on - strand, within HP15_3091at 3246.673 kb on - strand, within HP15_3091at 3246.716 kb on - strand, within HP15_3091at 3246.757 kb on + strand, within HP15_3091at 3246.768 kb on + strand, within HP15_3091at 3246.776 kb on - strand, within HP15_3091at 3246.922 kb on + strand, within HP15_3091at 3247.014 kb on - strandat 3247.075 kb on - strandat 3247.075 kb on - strandat 3247.075 kb on - strandat 3247.128 kb on + strandat 3247.729 kb on - strandat 3247.732 kb on - strandat 3247.739 kb on - strand, within HP15_3092at 3247.744 kb on - strand, within HP15_3092at 3247.764 kb on + strand, within HP15_3092at 3247.777 kb on + strand, within HP15_3092at 3247.804 kb on - strand, within HP15_3092at 3247.841 kb on - strand, within HP15_3092at 3247.849 kb on - strand, within HP15_3092at 3248.051 kb on - strand, within HP15_3092at 3248.070 kb on + strand, within HP15_3092at 3248.083 kb on - strand, within HP15_3092

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM
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3,244,776 + +0.5
3,244,812 - -0.8
3,244,819 - +1.2
3,245,014 + +0.3
3,245,030 + -0.2
3,245,636 - +0.5
3,245,655 + +0.3
3,245,795 + +0.6
3,245,812 - +0.1
3,245,842 - +1.4
3,245,849 - -0.2
3,245,946 - HP15_3091 0.14 -0.3
3,245,976 - HP15_3091 0.16 -0.1
3,246,089 + HP15_3091 0.24 -0.0
3,246,181 + HP15_3091 0.31 +0.7
3,246,238 - HP15_3091 0.35 +1.1
3,246,251 + HP15_3091 0.36 +0.7
3,246,251 + HP15_3091 0.36 +0.4
3,246,251 + HP15_3091 0.36 +0.8
3,246,251 + HP15_3091 0.36 -2.2
3,246,259 - HP15_3091 0.37 -0.2
3,246,354 + HP15_3091 0.43 +0.8
3,246,354 + HP15_3091 0.43 +0.4
3,246,377 - HP15_3091 0.45 +0.1
3,246,398 + HP15_3091 0.47 -0.3
3,246,406 - HP15_3091 0.47 -0.1
3,246,447 + HP15_3091 0.50 +0.9
3,246,450 - HP15_3091 0.51 +0.4
3,246,486 - HP15_3091 0.53 -0.1
3,246,491 + HP15_3091 0.54 +0.5
3,246,499 - HP15_3091 0.54 +0.2
3,246,499 - HP15_3091 0.54 -0.2
3,246,523 - HP15_3091 0.56 -0.1
3,246,538 - HP15_3091 0.57 -0.4
3,246,583 - HP15_3091 0.60 -1.4
3,246,588 + HP15_3091 0.61 +0.2
3,246,621 + HP15_3091 0.63 +0.2
3,246,621 + HP15_3091 0.63 +1.0
3,246,621 + HP15_3091 0.63 -1.1
3,246,621 + HP15_3091 0.63 +0.9
3,246,629 - HP15_3091 0.64 +0.2
3,246,629 - HP15_3091 0.64 +0.6
3,246,673 - HP15_3091 0.67 -2.0
3,246,716 - HP15_3091 0.70 +0.0
3,246,757 + HP15_3091 0.73 +0.2
3,246,768 + HP15_3091 0.74 +0.9
3,246,776 - HP15_3091 0.74 +1.1
3,246,922 + HP15_3091 0.85 +0.2
3,247,014 - +0.9
3,247,075 - +1.1
3,247,075 - +0.7
3,247,075 - -0.1
3,247,128 + +0.2
3,247,729 - -0.2
3,247,732 - +0.7
3,247,739 - HP15_3092 0.10 +0.7
3,247,744 - HP15_3092 0.11 +0.0
3,247,764 + HP15_3092 0.13 -0.1
3,247,777 + HP15_3092 0.14 +0.8
3,247,804 - HP15_3092 0.16 +0.7
3,247,841 - HP15_3092 0.19 +1.1
3,247,849 - HP15_3092 0.20 +0.2
3,248,051 - HP15_3092 0.38 +0.5
3,248,070 + HP15_3092 0.40 +0.4
3,248,083 - HP15_3092 0.41 +0.9

Or see this region's nucleotide sequence