Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30670

Experiment: marine broth pH8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH8
3,200,728	-		PGA1_c30650	0.50	+0.0
3,200,801	+		PGA1_c30650	0.55	-0.5
3,200,808	+		PGA1_c30650	0.56	-3.4
3,200,809	-		PGA1_c30650	0.56	+1.0
3,200,817	-		PGA1_c30650	0.57	-0.6
3,200,832	+		PGA1_c30650	0.58	+1.2
3,200,837	+		PGA1_c30650	0.58	-0.6
3,200,863	-		PGA1_c30650	0.60	-0.2
3,200,870	-		PGA1_c30650	0.61	+0.2
3,200,870	-		PGA1_c30650	0.61	-0.0
3,200,870	-		PGA1_c30650	0.61	-0.3
3,200,875	-		PGA1_c30650	0.61	+0.1
3,200,886	-		PGA1_c30650	0.62	-3.3
3,200,886	-		PGA1_c30650	0.62	+2.0
3,200,890	+		PGA1_c30650	0.62	+0.0
3,200,891	+		PGA1_c30650	0.62	+0.5
3,200,891	+		PGA1_c30650	0.62	-1.7
3,200,932	+		PGA1_c30650	0.65	-1.0
3,200,940	-		PGA1_c30650	0.66	+1.2
3,200,945	+		PGA1_c30650	0.66	-0.5
3,200,981	-		PGA1_c30650	0.69	-1.0
3,200,992	+		PGA1_c30650	0.70	+0.0
3,201,043	+		PGA1_c30650	0.74	-0.6
3,201,076	-		PGA1_c30650	0.76	-0.9
3,201,086	-		PGA1_c30650	0.77	+1.4
3,201,115	-		PGA1_c30650	0.79	-0.3
3,201,138	+		PGA1_c30650	0.81	+0.5
3,201,192	-		PGA1_c30650	0.85	+0.9
3,201,218	+		PGA1_c30650	0.87	+0.4
3,201,244	+		PGA1_c30650	0.89	-0.6
3,201,244	+		PGA1_c30650	0.89	-0.0
3,201,247	-		PGA1_c30650	0.89	+1.2
3,201,252	-		PGA1_c30650	0.89	+1.1
3,201,252	-		PGA1_c30650	0.89	+1.9
3,201,252	-		PGA1_c30650	0.89	-0.2
3,201,252	-		PGA1_c30650	0.89	-1.6
3,201,264	-				-0.2
3,201,274	+				-1.6
3,201,274	+				+0.4
3,201,274	+				-2.0
3,201,274	+				+0.4
3,201,274	+				-0.9
3,201,282	-				+0.9
3,201,298	+				+0.2
3,201,298	+				-0.7
3,201,298	+				-0.4
3,201,306	-				-2.4
3,201,315	+				+0.7
3,201,356	+				-0.6
3,201,356	+				-0.7
3,201,356	+				+0.5
3,201,364	-				-1.7
3,201,391	+				-0.6
3,201,391	+				-0.1
3,201,473	-		PGA1_c30660	0.25	+0.1
3,201,473	-		PGA1_c30660	0.25	-0.9
3,201,473	-		PGA1_c30660	0.25	+0.6
3,201,478	+		PGA1_c30660	0.27	-1.6
3,201,493	-		PGA1_c30660	0.33	+1.2
3,201,532	-		PGA1_c30660	0.47	+1.3
3,201,544	-		PGA1_c30660	0.51	-0.2
3,201,578	+		PGA1_c30660	0.63	-1.3
3,201,605	+		PGA1_c30660	0.73	-1.9
3,201,623	+		PGA1_c30660	0.80	+1.0
3,201,631	-		PGA1_c30660	0.83	-0.2
3,201,652	+				-0.3
3,201,662	-				+0.0
3,201,684	-				+0.5
3,201,723	+				-0.0
3,201,764	+		PGA1_c30670	0.12	-2.6
3,201,764	+		PGA1_c30670	0.12	-1.3
3,201,772	-		PGA1_c30670	0.13	-1.3
3,201,772	-		PGA1_c30670	0.13	+0.1
3,201,772	-		PGA1_c30670	0.13	-0.9
3,201,772	-		PGA1_c30670	0.13	-2.3
3,201,808	-		PGA1_c30670	0.20	+0.1
3,201,858	-		PGA1_c30670	0.28	+0.6
3,201,886	+		PGA1_c30670	0.33	-0.9
3,201,887	+		PGA1_c30670	0.33	-0.7
3,201,888	+		PGA1_c30670	0.33	-0.0
3,202,006	-		PGA1_c30670	0.53	-0.2
3,202,055	+		PGA1_c30670	0.62	-1.3
3,202,056	-		PGA1_c30670	0.62	-0.2
3,202,423	-				+0.2
3,202,463	+				-1.2
3,202,494	+				-1.8
3,202,531	-				+0.0
3,202,531	-				+0.1
3,202,533	+				+0.3
3,202,533	+				-1.0
3,202,533	+				-0.5
3,202,533	+				-0.2
3,202,541	-				+0.6
3,202,541	-				-1.8
3,202,541	-				-1.5
3,202,541	-				+2.2
3,202,654	+				-0.2
3,202,662	-				-0.4
3,202,696	-				-1.0
3,202,698	-				-0.1
3,202,713	+				-2.5
3,202,717	+				+0.7
3,202,718	+				-1.7
3,202,726	-		PGA1_c30680	0.10	-0.0
3,202,762	+		PGA1_c30680	0.15	-0.4
3,202,780	-		PGA1_c30680	0.18	-0.9
3,202,780	-		PGA1_c30680	0.18	+1.3
3,202,780	-		PGA1_c30680	0.18	-1.2
3,202,819	+		PGA1_c30680	0.23	+0.3
3,202,831	+		PGA1_c30680	0.24	-1.6
3,202,844	+		PGA1_c30680	0.26	-0.2
3,202,844	+		PGA1_c30680	0.26	+0.7
3,202,844	+		PGA1_c30680	0.26	-0.1
3,202,852	-		PGA1_c30680	0.27	-2.5
3,202,852	-		PGA1_c30680	0.27	-1.9
3,202,873	+		PGA1_c30680	0.30	+0.6
3,202,878	+		PGA1_c30680	0.31	-1.9
3,202,878	+		PGA1_c30680	0.31	+1.4
3,202,878	+		PGA1_c30680	0.31	+0.4
3,202,881	-		PGA1_c30680	0.31	+1.2
3,202,886	-		PGA1_c30680	0.32	-0.5
3,202,898	-		PGA1_c30680	0.33	+0.7
3,202,902	+		PGA1_c30680	0.34	-1.4
3,202,902	+		PGA1_c30680	0.34	+0.2
3,202,902	+		PGA1_c30680	0.34	-2.7
3,202,902	+		PGA1_c30680	0.34	+0.3
3,202,902	-		PGA1_c30680	0.34	-0.8
3,202,950	+		PGA1_c30680	0.40	+0.4
3,202,950	+		PGA1_c30680	0.40	+2.2
3,202,950	+		PGA1_c30680	0.40	-1.9
3,202,950	+		PGA1_c30680	0.40	+0.3
3,202,950	+		PGA1_c30680	0.40	-2.4
3,202,958	-		PGA1_c30680	0.41	-1.2
3,202,958	-		PGA1_c30680	0.41	-0.9
3,202,958	-		PGA1_c30680	0.41	+0.6
3,202,958	-		PGA1_c30680	0.41	+0.2
3,202,958	-		PGA1_c30680	0.41	-0.4
3,202,958	-		PGA1_c30680	0.41	-0.5
3,203,000	-		PGA1_c30680	0.47	+0.3
3,203,001	+		PGA1_c30680	0.47	+0.6
3,203,004	-		PGA1_c30680	0.47	-2.4
3,203,004	-		PGA1_c30680	0.47	+0.5
3,203,004	-		PGA1_c30680	0.47	-0.2
3,203,004	-		PGA1_c30680	0.47	-2.6
3,203,009	-		PGA1_c30680	0.48	+0.6
3,203,009	-		PGA1_c30680	0.48	+0.6
3,203,054	+		PGA1_c30680	0.54	+0.1
3,203,062	-		PGA1_c30680	0.55	-1.0
3,203,121	+		PGA1_c30680	0.63	+1.1
3,203,121	+		PGA1_c30680	0.63	-0.9
3,203,123	+		PGA1_c30680	0.63	-0.2
3,203,123	+		PGA1_c30680	0.63	+0.1
3,203,123	+		PGA1_c30680	0.63	-1.5
3,203,123	+		PGA1_c30680	0.63	-0.2
3,203,123	+		PGA1_c30680	0.63	+1.7
3,203,123	+		PGA1_c30680	0.63	+0.6
3,203,129	-		PGA1_c30680	0.64	-0.9
3,203,129	-		PGA1_c30680	0.64	+2.7
3,203,129	-		PGA1_c30680	0.64	-0.2
3,203,129	-		PGA1_c30680	0.64	+2.3
3,203,131	-		PGA1_c30680	0.64	-0.9
3,203,131	-		PGA1_c30680	0.64	+1.6
3,203,131	-		PGA1_c30680	0.64	+1.0
3,203,131	-		PGA1_c30680	0.64	+3.1
3,203,131	-		PGA1_c30680	0.64	-1.0
3,203,176	+		PGA1_c30680	0.70	-1.3
3,203,200	+		PGA1_c30680	0.73	+0.5
3,203,200	+		PGA1_c30680	0.73	+0.7
3,203,200	+		PGA1_c30680	0.73	-3.0
3,203,208	-		PGA1_c30680	0.75	-0.3
3,203,232	-		PGA1_c30680	0.78	-0.5
3,203,262	+		PGA1_c30680	0.82	-0.2
3,203,270	-		PGA1_c30680	0.83	+1.6
3,203,279	-		PGA1_c30680	0.84	+1.5