Experiment: m.b. Choline Lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2614 and HP15_2615 overlap by 4 nucleotides HP15_2615 and HP15_2616 are separated by 113 nucleotides HP15_2616 and HP15_2617 are separated by 72 nucleotides HP15_2617 and HP15_2618 are separated by 61 nucleotides
HP15_2614: HP15_2614 - integral membrane sensor signal transduction histidine kinase, at 2,765,882 to 2,767,204
_2614
HP15_2615: HP15_2615 - two component transcriptional regulator, winged helix family, at 2,767,201 to 2,767,887
_2615
HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227
_2616
HP15_2617: HP15_2617 - conserved hypothetical protein, secreted, at 2,769,300 to 2,769,890
_2617
HP15_2618: HP15_2618 - dodecin flavoprotein, at 2,769,952 to 2,770,152
_2618
Position (kb)
2768
2769
2770 Strain fitness (log2 ratio)
-1
0
1 at 2767.094 kb on + strand at 2767.175 kb on + strand at 2767.227 kb on - strand at 2767.292 kb on - strand, within HP15_2615 at 2767.299 kb on + strand, within HP15_2615 at 2767.299 kb on + strand, within HP15_2615 at 2767.307 kb on - strand, within HP15_2615 at 2767.320 kb on - strand, within HP15_2615 at 2767.472 kb on + strand, within HP15_2615 at 2767.722 kb on + strand, within HP15_2615 at 2767.758 kb on - strand, within HP15_2615 at 2767.767 kb on + strand, within HP15_2615 at 2767.832 kb on - strand at 2767.832 kb on - strand at 2767.990 kb on - strand at 2767.990 kb on - strand at 2768.209 kb on + strand, within HP15_2616 at 2768.255 kb on + strand, within HP15_2616 at 2768.327 kb on + strand, within HP15_2616 at 2768.327 kb on + strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.340 kb on - strand, within HP15_2616 at 2768.346 kb on - strand, within HP15_2616 at 2768.400 kb on - strand, within HP15_2616 at 2768.412 kb on - strand, within HP15_2616 at 2768.437 kb on + strand, within HP15_2616 at 2768.472 kb on - strand, within HP15_2616 at 2768.513 kb on - strand, within HP15_2616 at 2768.517 kb on - strand, within HP15_2616 at 2768.537 kb on + strand, within HP15_2616 at 2768.627 kb on + strand, within HP15_2616 at 2768.841 kb on - strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.927 kb on + strand, within HP15_2616 at 2768.947 kb on + strand, within HP15_2616 at 2769.042 kb on + strand, within HP15_2616 at 2769.092 kb on + strand, within HP15_2616 at 2769.154 kb on + strand at 2769.228 kb on + strand at 2769.351 kb on - strand at 2769.351 kb on - strand at 2769.387 kb on + strand, within HP15_2617 at 2769.405 kb on - strand, within HP15_2617 at 2769.649 kb on + strand, within HP15_2617 at 2769.707 kb on + strand, within HP15_2617 at 2769.795 kb on - strand, within HP15_2617 at 2770.086 kb on - strand, within HP15_2618 at 2770.088 kb on - strand, within HP15_2618
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM remove 2,767,094 + +0.1 2,767,175 + -0.4 2,767,227 - -0.3 2,767,292 - HP15_2615 0.13 +0.7 2,767,299 + HP15_2615 0.14 -0.6 2,767,299 + HP15_2615 0.14 -0.6 2,767,307 - HP15_2615 0.15 -0.2 2,767,320 - HP15_2615 0.17 +0.1 2,767,472 + HP15_2615 0.39 -0.7 2,767,722 + HP15_2615 0.76 +0.4 2,767,758 - HP15_2615 0.81 +0.7 2,767,767 + HP15_2615 0.82 -0.5 2,767,832 - +1.1 2,767,832 - +1.2 2,767,990 - +0.5 2,767,990 - +0.5 2,768,209 + HP15_2616 0.17 +0.4 2,768,255 + HP15_2616 0.21 -0.4 2,768,327 + HP15_2616 0.27 -0.2 2,768,327 + HP15_2616 0.27 -0.4 2,768,335 - HP15_2616 0.27 +0.7 2,768,335 - HP15_2616 0.27 +0.5 2,768,335 - HP15_2616 0.27 -0.8 2,768,340 - HP15_2616 0.28 -0.2 2,768,346 - HP15_2616 0.28 -0.6 2,768,400 - HP15_2616 0.33 -0.1 2,768,412 - HP15_2616 0.33 +0.6 2,768,437 + HP15_2616 0.36 -0.0 2,768,472 - HP15_2616 0.38 -1.1 2,768,513 - HP15_2616 0.42 -0.8 2,768,517 - HP15_2616 0.42 -0.3 2,768,537 + HP15_2616 0.44 +0.2 2,768,627 + HP15_2616 0.51 -1.1 2,768,841 - HP15_2616 0.68 -0.6 2,768,856 + HP15_2616 0.70 -0.0 2,768,856 + HP15_2616 0.70 -0.4 2,768,856 + HP15_2616 0.70 -0.1 2,768,927 + HP15_2616 0.75 -0.9 2,768,947 + HP15_2616 0.77 +0.4 2,769,042 + HP15_2616 0.85 -0.3 2,769,092 + HP15_2616 0.89 +0.6 2,769,154 + +0.8 2,769,228 + +0.0 2,769,351 - -0.8 2,769,351 - -0.3 2,769,387 + HP15_2617 0.15 +1.7 2,769,405 - HP15_2617 0.18 -0.1 2,769,649 + HP15_2617 0.59 +0.9 2,769,707 + HP15_2617 0.69 -0.4 2,769,795 - HP15_2617 0.84 +0.1 2,770,086 - HP15_2618 0.67 +0.0 2,770,088 - HP15_2618 0.68 -0.3
Or see this region's nucleotide sequence