Strain Fitness in Marinobacter adhaerens HP15 around HP15_2616

Experiment: m.b. Choline Lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2614 and HP15_2615 overlap by 4 nucleotidesHP15_2615 and HP15_2616 are separated by 113 nucleotidesHP15_2616 and HP15_2617 are separated by 72 nucleotidesHP15_2617 and HP15_2618 are separated by 61 nucleotides HP15_2614: HP15_2614 - integral membrane sensor signal transduction histidine kinase, at 2,765,882 to 2,767,204 _2614 HP15_2615: HP15_2615 - two component transcriptional regulator, winged helix family, at 2,767,201 to 2,767,887 _2615 HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227 _2616 HP15_2617: HP15_2617 - conserved hypothetical protein, secreted, at 2,769,300 to 2,769,890 _2617 HP15_2618: HP15_2618 - dodecin flavoprotein, at 2,769,952 to 2,770,152 _2618 Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -1 0 1at 2767.094 kb on + strandat 2767.175 kb on + strandat 2767.227 kb on - strandat 2767.292 kb on - strand, within HP15_2615at 2767.299 kb on + strand, within HP15_2615at 2767.299 kb on + strand, within HP15_2615at 2767.307 kb on - strand, within HP15_2615at 2767.320 kb on - strand, within HP15_2615at 2767.472 kb on + strand, within HP15_2615at 2767.722 kb on + strand, within HP15_2615at 2767.758 kb on - strand, within HP15_2615at 2767.767 kb on + strand, within HP15_2615at 2767.832 kb on - strandat 2767.832 kb on - strandat 2767.990 kb on - strandat 2767.990 kb on - strandat 2768.209 kb on + strand, within HP15_2616at 2768.255 kb on + strand, within HP15_2616at 2768.327 kb on + strand, within HP15_2616at 2768.327 kb on + strand, within HP15_2616at 2768.335 kb on - strand, within HP15_2616at 2768.335 kb on - strand, within HP15_2616at 2768.335 kb on - strand, within HP15_2616at 2768.340 kb on - strand, within HP15_2616at 2768.346 kb on - strand, within HP15_2616at 2768.400 kb on - strand, within HP15_2616at 2768.412 kb on - strand, within HP15_2616at 2768.437 kb on + strand, within HP15_2616at 2768.472 kb on - strand, within HP15_2616at 2768.513 kb on - strand, within HP15_2616at 2768.517 kb on - strand, within HP15_2616at 2768.537 kb on + strand, within HP15_2616at 2768.627 kb on + strand, within HP15_2616at 2768.841 kb on - strand, within HP15_2616at 2768.856 kb on + strand, within HP15_2616at 2768.856 kb on + strand, within HP15_2616at 2768.856 kb on + strand, within HP15_2616at 2768.927 kb on + strand, within HP15_2616at 2768.947 kb on + strand, within HP15_2616at 2769.042 kb on + strand, within HP15_2616at 2769.092 kb on + strand, within HP15_2616at 2769.154 kb on + strandat 2769.228 kb on + strandat 2769.351 kb on - strandat 2769.351 kb on - strandat 2769.387 kb on + strand, within HP15_2617at 2769.405 kb on - strand, within HP15_2617at 2769.649 kb on + strand, within HP15_2617at 2769.707 kb on + strand, within HP15_2617at 2769.795 kb on - strand, within HP15_2617at 2770.086 kb on - strand, within HP15_2618at 2770.088 kb on - strand, within HP15_2618

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM
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2,767,094 + +0.1
2,767,175 + -0.4
2,767,227 - -0.3
2,767,292 - HP15_2615 0.13 +0.7
2,767,299 + HP15_2615 0.14 -0.6
2,767,299 + HP15_2615 0.14 -0.6
2,767,307 - HP15_2615 0.15 -0.2
2,767,320 - HP15_2615 0.17 +0.1
2,767,472 + HP15_2615 0.39 -0.7
2,767,722 + HP15_2615 0.76 +0.4
2,767,758 - HP15_2615 0.81 +0.7
2,767,767 + HP15_2615 0.82 -0.5
2,767,832 - +1.1
2,767,832 - +1.2
2,767,990 - +0.5
2,767,990 - +0.5
2,768,209 + HP15_2616 0.17 +0.4
2,768,255 + HP15_2616 0.21 -0.4
2,768,327 + HP15_2616 0.27 -0.2
2,768,327 + HP15_2616 0.27 -0.4
2,768,335 - HP15_2616 0.27 +0.7
2,768,335 - HP15_2616 0.27 +0.5
2,768,335 - HP15_2616 0.27 -0.8
2,768,340 - HP15_2616 0.28 -0.2
2,768,346 - HP15_2616 0.28 -0.6
2,768,400 - HP15_2616 0.33 -0.1
2,768,412 - HP15_2616 0.33 +0.6
2,768,437 + HP15_2616 0.36 -0.0
2,768,472 - HP15_2616 0.38 -1.1
2,768,513 - HP15_2616 0.42 -0.8
2,768,517 - HP15_2616 0.42 -0.3
2,768,537 + HP15_2616 0.44 +0.2
2,768,627 + HP15_2616 0.51 -1.1
2,768,841 - HP15_2616 0.68 -0.6
2,768,856 + HP15_2616 0.70 -0.0
2,768,856 + HP15_2616 0.70 -0.4
2,768,856 + HP15_2616 0.70 -0.1
2,768,927 + HP15_2616 0.75 -0.9
2,768,947 + HP15_2616 0.77 +0.4
2,769,042 + HP15_2616 0.85 -0.3
2,769,092 + HP15_2616 0.89 +0.6
2,769,154 + +0.8
2,769,228 + +0.0
2,769,351 - -0.8
2,769,351 - -0.3
2,769,387 + HP15_2617 0.15 +1.7
2,769,405 - HP15_2617 0.18 -0.1
2,769,649 + HP15_2617 0.59 +0.9
2,769,707 + HP15_2617 0.69 -0.4
2,769,795 - HP15_2617 0.84 +0.1
2,770,086 - HP15_2618 0.67 +0.0
2,770,088 - HP15_2618 0.68 -0.3

Or see this region's nucleotide sequence