Strain Fitness in Marinobacter adhaerens HP15 around HP15_2304

Experiment: m.b. Choline Lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2302 and HP15_2303 are separated by 31 nucleotidesHP15_2303 and HP15_2304 are separated by 92 nucleotidesHP15_2304 and HP15_2305 are separated by 60 nucleotides HP15_2302: HP15_2302 - flagellar biosynthesis sigma factor FliA, at 2,422,999 to 2,423,742 _2302 HP15_2303: HP15_2303 - flagellar synthesis regulator FleN, at 2,423,774 to 2,424,562 _2303 HP15_2304: HP15_2304 - flagellar biosynthesis regulator FlhF, at 2,424,655 to 2,425,962 _2304 HP15_2305: HP15_2305 - flagellar biosynthesis protein A, at 2,426,023 to 2,428,263 _2305 Position (kb) 2424 2425 2426Strain fitness (log2 ratio) -1 0 1 2at 2424.042 kb on + strand, within HP15_2303at 2424.109 kb on + strand, within HP15_2303at 2424.117 kb on - strand, within HP15_2303at 2424.290 kb on + strand, within HP15_2303at 2424.493 kb on + strandat 2424.625 kb on - strandat 2424.640 kb on - strandat 2424.751 kb on - strandat 2424.762 kb on - strandat 2424.891 kb on + strand, within HP15_2304at 2425.021 kb on + strand, within HP15_2304at 2425.024 kb on - strand, within HP15_2304at 2425.029 kb on - strand, within HP15_2304at 2425.029 kb on - strand, within HP15_2304at 2425.034 kb on - strand, within HP15_2304at 2425.173 kb on + strand, within HP15_2304at 2425.263 kb on + strand, within HP15_2304at 2425.296 kb on + strand, within HP15_2304at 2425.326 kb on + strand, within HP15_2304at 2425.413 kb on - strand, within HP15_2304at 2425.413 kb on - strand, within HP15_2304at 2425.451 kb on - strand, within HP15_2304at 2425.561 kb on + strand, within HP15_2304at 2425.592 kb on + strand, within HP15_2304at 2425.615 kb on + strand, within HP15_2304at 2425.785 kb on - strand, within HP15_2304at 2425.831 kb on - strand, within HP15_2304at 2425.904 kb on + strandat 2425.912 kb on - strandat 2425.928 kb on + strandat 2425.928 kb on + strandat 2425.928 kb on + strandat 2426.053 kb on - strandat 2426.105 kb on - strandat 2426.197 kb on + strandat 2426.199 kb on + strandat 2426.199 kb on + strandat 2426.542 kb on + strand, within HP15_2305at 2426.620 kb on - strand, within HP15_2305at 2426.622 kb on + strand, within HP15_2305at 2426.690 kb on + strand, within HP15_2305at 2426.702 kb on + strand, within HP15_2305at 2426.702 kb on - strand, within HP15_2305at 2426.720 kb on - strand, within HP15_2305at 2426.900 kb on - strand, within HP15_2305at 2426.940 kb on - strand, within HP15_2305at 2426.940 kb on - strand, within HP15_2305

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM
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2,424,042 + HP15_2303 0.34 -0.2
2,424,109 + HP15_2303 0.42 +0.9
2,424,117 - HP15_2303 0.43 -0.6
2,424,290 + HP15_2303 0.65 +0.9
2,424,493 + +1.6
2,424,625 - +1.2
2,424,640 - +0.8
2,424,751 - +1.3
2,424,762 - +1.9
2,424,891 + HP15_2304 0.18 +1.3
2,425,021 + HP15_2304 0.28 +1.2
2,425,024 - HP15_2304 0.28 +1.3
2,425,029 - HP15_2304 0.29 +0.9
2,425,029 - HP15_2304 0.29 +1.2
2,425,034 - HP15_2304 0.29 +1.4
2,425,173 + HP15_2304 0.40 +1.4
2,425,263 + HP15_2304 0.46 +0.9
2,425,296 + HP15_2304 0.49 +0.6
2,425,326 + HP15_2304 0.51 +0.8
2,425,413 - HP15_2304 0.58 +0.5
2,425,413 - HP15_2304 0.58 +1.7
2,425,451 - HP15_2304 0.61 +2.5
2,425,561 + HP15_2304 0.69 +1.1
2,425,592 + HP15_2304 0.72 +0.7
2,425,615 + HP15_2304 0.73 +0.6
2,425,785 - HP15_2304 0.86 +1.2
2,425,831 - HP15_2304 0.90 +1.7
2,425,904 + +1.1
2,425,912 - -0.4
2,425,928 + +1.0
2,425,928 + +0.7
2,425,928 + +0.9
2,426,053 - +1.4
2,426,105 - +1.0
2,426,197 + +0.8
2,426,199 + +1.2
2,426,199 + +1.3
2,426,542 + HP15_2305 0.23 +1.2
2,426,620 - HP15_2305 0.27 +0.7
2,426,622 + HP15_2305 0.27 +2.4
2,426,690 + HP15_2305 0.30 +0.8
2,426,702 + HP15_2305 0.30 +1.4
2,426,702 - HP15_2305 0.30 +2.1
2,426,720 - HP15_2305 0.31 +1.6
2,426,900 - HP15_2305 0.39 +1.7
2,426,940 - HP15_2305 0.41 +1.1
2,426,940 - HP15_2305 0.41 +2.4

Or see this region's nucleotide sequence