Strain Fitness in Marinobacter adhaerens HP15 around HP15_2300

Experiment: m.b. Choline Lysine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2298 and HP15_2299 are separated by 66 nucleotidesHP15_2299 and HP15_2300 are separated by 32 nucleotidesHP15_2300 and HP15_2301 are separated by 11 nucleotidesHP15_2301 and HP15_2302 are separated by 162 nucleotides HP15_2298: HP15_2298 - chemotaxis histidine kinase, at 2,419,482 to 2,421,632 _2298 HP15_2299: HP15_2299 - hypothetical protein, at 2,421,699 to 2,421,851 _2299 HP15_2300: HP15_2300 - chemotaxis phosphatase, CheZ, at 2,421,884 to 2,422,441 _2300 HP15_2301: HP15_2301 - response regulator receiver domain protein (CheY-), at 2,422,453 to 2,422,836 _2301 HP15_2302: HP15_2302 - flagellar biosynthesis sigma factor FliA, at 2,422,999 to 2,423,742 _2302 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -1 0 1 2 3at 2420.896 kb on + strand, within HP15_2298at 2421.098 kb on + strand, within HP15_2298at 2421.200 kb on + strand, within HP15_2298at 2421.241 kb on + strand, within HP15_2298at 2421.249 kb on - strand, within HP15_2298at 2421.249 kb on - strand, within HP15_2298at 2421.260 kb on - strand, within HP15_2298at 2421.318 kb on - strand, within HP15_2298at 2421.342 kb on + strand, within HP15_2298at 2421.456 kb on - strandat 2421.501 kb on - strandat 2421.505 kb on + strandat 2421.530 kb on - strandat 2421.633 kb on + strandat 2421.633 kb on + strandat 2421.641 kb on - strandat 2421.727 kb on - strand, within HP15_2299at 2421.750 kb on - strand, within HP15_2299at 2421.815 kb on + strand, within HP15_2299at 2421.873 kb on + strandat 2422.041 kb on - strand, within HP15_2300at 2422.102 kb on + strand, within HP15_2300at 2422.110 kb on - strand, within HP15_2300at 2422.143 kb on + strand, within HP15_2300at 2422.312 kb on + strand, within HP15_2300at 2422.315 kb on - strand, within HP15_2300at 2422.357 kb on + strand, within HP15_2300at 2422.396 kb on + strandat 2422.404 kb on - strandat 2422.545 kb on - strand, within HP15_2301at 2422.565 kb on + strand, within HP15_2301at 2422.565 kb on + strand, within HP15_2301at 2422.628 kb on + strand, within HP15_2301at 2422.628 kb on + strand, within HP15_2301at 2422.628 kb on + strand, within HP15_2301at 2422.636 kb on - strand, within HP15_2301at 2422.636 kb on - strand, within HP15_2301at 2422.636 kb on - strand, within HP15_2301at 2422.987 kb on + strandat 2423.070 kb on + strandat 2423.070 kb on + strandat 2423.070 kb on + strandat 2423.078 kb on - strand, within HP15_2302at 2423.078 kb on - strand, within HP15_2302at 2423.078 kb on - strand, within HP15_2302at 2423.093 kb on - strand, within HP15_2302at 2423.119 kb on - strand, within HP15_2302at 2423.231 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.354 kb on - strand, within HP15_2302at 2423.370 kb on + strand, within HP15_2302

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM
remove
2,420,896 + HP15_2298 0.66 +1.6
2,421,098 + HP15_2298 0.75 +1.7
2,421,200 + HP15_2298 0.80 +2.2
2,421,241 + HP15_2298 0.82 +1.8
2,421,249 - HP15_2298 0.82 +1.7
2,421,249 - HP15_2298 0.82 +2.3
2,421,260 - HP15_2298 0.83 +0.9
2,421,318 - HP15_2298 0.85 +2.2
2,421,342 + HP15_2298 0.86 +1.8
2,421,456 - +1.8
2,421,501 - +2.8
2,421,505 + +2.3
2,421,530 - +1.1
2,421,633 + +1.7
2,421,633 + +1.3
2,421,641 - +1.3
2,421,727 - HP15_2299 0.18 +2.3
2,421,750 - HP15_2299 0.33 +1.7
2,421,815 + HP15_2299 0.76 +1.4
2,421,873 + +0.4
2,422,041 - HP15_2300 0.28 +1.5
2,422,102 + HP15_2300 0.39 +2.4
2,422,110 - HP15_2300 0.41 +1.4
2,422,143 + HP15_2300 0.46 +1.6
2,422,312 + HP15_2300 0.77 +0.6
2,422,315 - HP15_2300 0.77 +1.3
2,422,357 + HP15_2300 0.85 +1.8
2,422,396 + +1.7
2,422,404 - +1.4
2,422,545 - HP15_2301 0.24 +1.3
2,422,565 + HP15_2301 0.29 +1.8
2,422,565 + HP15_2301 0.29 +0.8
2,422,628 + HP15_2301 0.46 +1.8
2,422,628 + HP15_2301 0.46 +2.0
2,422,628 + HP15_2301 0.46 +1.1
2,422,636 - HP15_2301 0.48 +2.2
2,422,636 - HP15_2301 0.48 +1.4
2,422,636 - HP15_2301 0.48 +0.7
2,422,987 + +1.1
2,423,070 + +1.2
2,423,070 + +1.0
2,423,070 + +0.4
2,423,078 - HP15_2302 0.11 +1.4
2,423,078 - HP15_2302 0.11 -0.1
2,423,078 - HP15_2302 0.11 +2.1
2,423,093 - HP15_2302 0.13 +0.7
2,423,119 - HP15_2302 0.16 +1.9
2,423,231 + HP15_2302 0.31 +1.6
2,423,346 + HP15_2302 0.47 +1.7
2,423,346 + HP15_2302 0.47 +1.5
2,423,346 + HP15_2302 0.47 +1.5
2,423,354 - HP15_2302 0.48 +1.7
2,423,370 + HP15_2302 0.50 +1.0

Or see this region's nucleotide sequence