Experiment: m.b. Choline Lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2298 and HP15_2299 are separated by 66 nucleotides HP15_2299 and HP15_2300 are separated by 32 nucleotides HP15_2300 and HP15_2301 are separated by 11 nucleotides HP15_2301 and HP15_2302 are separated by 162 nucleotides
HP15_2298: HP15_2298 - chemotaxis histidine kinase, at 2,419,482 to 2,421,632
_2298
HP15_2299: HP15_2299 - hypothetical protein, at 2,421,699 to 2,421,851
_2299
HP15_2300: HP15_2300 - chemotaxis phosphatase, CheZ, at 2,421,884 to 2,422,441
_2300
HP15_2301: HP15_2301 - response regulator receiver domain protein (CheY-), at 2,422,453 to 2,422,836
_2301
HP15_2302: HP15_2302 - flagellar biosynthesis sigma factor FliA, at 2,422,999 to 2,423,742
_2302
Position (kb)
2421
2422
2423 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2420.896 kb on + strand, within HP15_2298 at 2421.098 kb on + strand, within HP15_2298 at 2421.200 kb on + strand, within HP15_2298 at 2421.241 kb on + strand, within HP15_2298 at 2421.249 kb on - strand, within HP15_2298 at 2421.249 kb on - strand, within HP15_2298 at 2421.260 kb on - strand, within HP15_2298 at 2421.318 kb on - strand, within HP15_2298 at 2421.342 kb on + strand, within HP15_2298 at 2421.456 kb on - strand at 2421.501 kb on - strand at 2421.505 kb on + strand at 2421.530 kb on - strand at 2421.633 kb on + strand at 2421.633 kb on + strand at 2421.641 kb on - strand at 2421.727 kb on - strand, within HP15_2299 at 2421.750 kb on - strand, within HP15_2299 at 2421.815 kb on + strand, within HP15_2299 at 2421.873 kb on + strand at 2422.041 kb on - strand, within HP15_2300 at 2422.102 kb on + strand, within HP15_2300 at 2422.110 kb on - strand, within HP15_2300 at 2422.143 kb on + strand, within HP15_2300 at 2422.312 kb on + strand, within HP15_2300 at 2422.315 kb on - strand, within HP15_2300 at 2422.357 kb on + strand, within HP15_2300 at 2422.396 kb on + strand at 2422.404 kb on - strand at 2422.545 kb on - strand, within HP15_2301 at 2422.565 kb on + strand, within HP15_2301 at 2422.565 kb on + strand, within HP15_2301 at 2422.628 kb on + strand, within HP15_2301 at 2422.628 kb on + strand, within HP15_2301 at 2422.628 kb on + strand, within HP15_2301 at 2422.636 kb on - strand, within HP15_2301 at 2422.636 kb on - strand, within HP15_2301 at 2422.636 kb on - strand, within HP15_2301 at 2422.987 kb on + strand at 2423.070 kb on + strand at 2423.070 kb on + strand at 2423.070 kb on + strand at 2423.078 kb on - strand, within HP15_2302 at 2423.078 kb on - strand, within HP15_2302 at 2423.078 kb on - strand, within HP15_2302 at 2423.093 kb on - strand, within HP15_2302 at 2423.119 kb on - strand, within HP15_2302 at 2423.231 kb on + strand, within HP15_2302 at 2423.346 kb on + strand, within HP15_2302 at 2423.346 kb on + strand, within HP15_2302 at 2423.346 kb on + strand, within HP15_2302 at 2423.354 kb on - strand, within HP15_2302 at 2423.370 kb on + strand, within HP15_2302
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM remove 2,420,896 + HP15_2298 0.66 +1.6 2,421,098 + HP15_2298 0.75 +1.7 2,421,200 + HP15_2298 0.80 +2.2 2,421,241 + HP15_2298 0.82 +1.8 2,421,249 - HP15_2298 0.82 +1.7 2,421,249 - HP15_2298 0.82 +2.3 2,421,260 - HP15_2298 0.83 +0.9 2,421,318 - HP15_2298 0.85 +2.2 2,421,342 + HP15_2298 0.86 +1.8 2,421,456 - +1.8 2,421,501 - +2.8 2,421,505 + +2.3 2,421,530 - +1.1 2,421,633 + +1.7 2,421,633 + +1.3 2,421,641 - +1.3 2,421,727 - HP15_2299 0.18 +2.3 2,421,750 - HP15_2299 0.33 +1.7 2,421,815 + HP15_2299 0.76 +1.4 2,421,873 + +0.4 2,422,041 - HP15_2300 0.28 +1.5 2,422,102 + HP15_2300 0.39 +2.4 2,422,110 - HP15_2300 0.41 +1.4 2,422,143 + HP15_2300 0.46 +1.6 2,422,312 + HP15_2300 0.77 +0.6 2,422,315 - HP15_2300 0.77 +1.3 2,422,357 + HP15_2300 0.85 +1.8 2,422,396 + +1.7 2,422,404 - +1.4 2,422,545 - HP15_2301 0.24 +1.3 2,422,565 + HP15_2301 0.29 +1.8 2,422,565 + HP15_2301 0.29 +0.8 2,422,628 + HP15_2301 0.46 +1.8 2,422,628 + HP15_2301 0.46 +2.0 2,422,628 + HP15_2301 0.46 +1.1 2,422,636 - HP15_2301 0.48 +2.2 2,422,636 - HP15_2301 0.48 +1.4 2,422,636 - HP15_2301 0.48 +0.7 2,422,987 + +1.1 2,423,070 + +1.2 2,423,070 + +1.0 2,423,070 + +0.4 2,423,078 - HP15_2302 0.11 +1.4 2,423,078 - HP15_2302 0.11 -0.1 2,423,078 - HP15_2302 0.11 +2.1 2,423,093 - HP15_2302 0.13 +0.7 2,423,119 - HP15_2302 0.16 +1.9 2,423,231 + HP15_2302 0.31 +1.6 2,423,346 + HP15_2302 0.47 +1.7 2,423,346 + HP15_2302 0.47 +1.5 2,423,346 + HP15_2302 0.47 +1.5 2,423,354 - HP15_2302 0.48 +1.7 2,423,370 + HP15_2302 0.50 +1.0
Or see this region's nucleotide sequence