Experiment: m.b. Choline Lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2073 and HP15_2074 overlap by 1 nucleotides HP15_2074 and HP15_2075 are separated by 7 nucleotides
HP15_2073: HP15_2073 - peptidyl-arginine deiminase family protein, at 2,173,252 to 2,174,250
_2073
HP15_2074: HP15_2074 - carbon-nitrogen hydrolase family protein, at 2,174,250 to 2,175,173
_2074
HP15_2075: HP15_2075 - MoxR protein, at 2,175,181 to 2,176,092
_2075
Position (kb)
2174
2175
2176 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2173.257 kb on + strand at 2173.649 kb on - strand, within HP15_2073 at 2173.879 kb on - strand, within HP15_2073 at 2173.917 kb on + strand, within HP15_2073 at 2173.959 kb on - strand, within HP15_2073 at 2173.996 kb on + strand, within HP15_2073 at 2174.004 kb on - strand, within HP15_2073 at 2174.009 kb on - strand, within HP15_2073 at 2174.029 kb on - strand, within HP15_2073 at 2174.102 kb on + strand, within HP15_2073 at 2174.414 kb on - strand, within HP15_2074 at 2174.450 kb on + strand, within HP15_2074 at 2174.503 kb on - strand, within HP15_2074 at 2174.527 kb on - strand, within HP15_2074 at 2174.739 kb on + strand, within HP15_2074 at 2174.754 kb on - strand, within HP15_2074 at 2174.895 kb on + strand, within HP15_2074 at 2174.928 kb on + strand, within HP15_2074 at 2175.339 kb on + strand, within HP15_2075 at 2175.347 kb on - strand, within HP15_2075 at 2175.457 kb on + strand, within HP15_2075 at 2175.528 kb on + strand, within HP15_2075 at 2175.616 kb on - strand, within HP15_2075 at 2175.635 kb on - strand, within HP15_2075 at 2175.643 kb on - strand, within HP15_2075 at 2175.726 kb on - strand, within HP15_2075 at 2175.779 kb on - strand, within HP15_2075 at 2175.795 kb on + strand, within HP15_2075 at 2175.840 kb on - strand, within HP15_2075 at 2175.936 kb on + strand, within HP15_2075 at 2175.936 kb on + strand, within HP15_2075 at 2175.939 kb on - strand, within HP15_2075 at 2175.981 kb on + strand, within HP15_2075 at 2175.989 kb on - strand, within HP15_2075 at 2176.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM remove 2,173,257 + +0.1 2,173,649 - HP15_2073 0.40 -1.0 2,173,879 - HP15_2073 0.63 -1.2 2,173,917 + HP15_2073 0.67 -0.4 2,173,959 - HP15_2073 0.71 -0.7 2,173,996 + HP15_2073 0.74 -0.7 2,174,004 - HP15_2073 0.75 -1.0 2,174,009 - HP15_2073 0.76 -1.0 2,174,029 - HP15_2073 0.78 -0.0 2,174,102 + HP15_2073 0.85 -0.5 2,174,414 - HP15_2074 0.18 -2.6 2,174,450 + HP15_2074 0.22 -1.8 2,174,503 - HP15_2074 0.27 -2.7 2,174,527 - HP15_2074 0.30 -0.4 2,174,739 + HP15_2074 0.53 -2.0 2,174,754 - HP15_2074 0.55 -2.7 2,174,895 + HP15_2074 0.70 -1.3 2,174,928 + HP15_2074 0.73 -1.6 2,175,339 + HP15_2075 0.17 -0.6 2,175,347 - HP15_2075 0.18 -1.0 2,175,457 + HP15_2075 0.30 +0.6 2,175,528 + HP15_2075 0.38 -0.2 2,175,616 - HP15_2075 0.48 -1.1 2,175,635 - HP15_2075 0.50 -0.6 2,175,643 - HP15_2075 0.51 -1.0 2,175,726 - HP15_2075 0.60 +0.9 2,175,779 - HP15_2075 0.66 +0.2 2,175,795 + HP15_2075 0.67 +1.9 2,175,840 - HP15_2075 0.72 -0.3 2,175,936 + HP15_2075 0.83 -0.1 2,175,936 + HP15_2075 0.83 -0.2 2,175,939 - HP15_2075 0.83 +0.2 2,175,981 + HP15_2075 0.88 -1.4 2,175,989 - HP15_2075 0.89 +0.1 2,176,016 + +0.4
Or see this region's nucleotide sequence