Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18900

Experiment: marine broth pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18880 and PGA1_c18890 overlap by 4 nucleotidesPGA1_c18890 and PGA1_c18900 are separated by 103 nucleotidesPGA1_c18900 and PGA1_c18910 are separated by 168 nucleotides PGA1_c18880: PGA1_c18880 - heme exporter protein B, at 1,959,980 to 1,960,636 _c18880 PGA1_c18890: PGA1_c18890 - cytochrome c biogenesis ATP-binding export protein CcmA, at 1,960,633 to 1,961,253 _c18890 PGA1_c18900: PGA1_c18900 - Uncharacterized conserved protein, at 1,961,357 to 1,961,710 _c18900 PGA1_c18910: PGA1_c18910 - protein-export membrane protein SecF, at 1,961,879 to 1,962,847 _c18910 Position (kb) 1961 1962Strain fitness (log2 ratio) -3 -2 -1 0 1at 1961.344 kb on + strandat 1961.354 kb on + strandat 1961.400 kb on - strand, within PGA1_c18900at 1961.400 kb on - strand, within PGA1_c18900at 1961.750 kb on + strandat 1961.793 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH8
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1,961,344 + -3.0
1,961,354 + +0.3
1,961,400 - PGA1_c18900 0.12 -2.1
1,961,400 - PGA1_c18900 0.12 -1.3
1,961,750 + -0.7
1,961,793 + -1.0

Or see this region's nucleotide sequence