Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11660

Experiment: marine broth pH8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH8
1,205,238	+		PGA1_c11650	0.30	+0.1
1,205,267	-		PGA1_c11650	0.32	-0.3
1,205,279	+		PGA1_c11650	0.33	+0.4
1,205,281	+		PGA1_c11650	0.33	+0.1
1,205,282	+		PGA1_c11650	0.33	+0.5
1,205,333	+		PGA1_c11650	0.38	-0.1
1,205,349	-		PGA1_c11650	0.39	+0.2
1,205,363	+		PGA1_c11650	0.40	-1.4
1,205,407	+		PGA1_c11650	0.44	+1.0
1,205,410	+		PGA1_c11650	0.44	-2.5
1,205,436	+		PGA1_c11650	0.47	-2.6
1,205,467	+		PGA1_c11650	0.49	+0.0
1,205,512	+		PGA1_c11650	0.53	+0.5
1,205,520	-		PGA1_c11650	0.54	-0.8
1,205,557	+		PGA1_c11650	0.57	-0.5
1,205,612	-		PGA1_c11650	0.62	+0.8
1,205,621	+		PGA1_c11650	0.63	+1.0
1,205,642	+		PGA1_c11650	0.65	-0.0
1,205,642	+		PGA1_c11650	0.65	-1.1
1,205,642	+		PGA1_c11650	0.65	-0.7
1,205,701	+		PGA1_c11650	0.70	-1.8
1,205,701	+		PGA1_c11650	0.70	-0.5
1,205,709	-		PGA1_c11650	0.70	-3.0
1,205,709	-		PGA1_c11650	0.70	-0.5
1,205,778	+		PGA1_c11650	0.76	+0.1
1,205,783	+		PGA1_c11650	0.77	+0.2
1,205,875	-		PGA1_c11650	0.85	-0.5
1,205,885	-		PGA1_c11650	0.86	+0.2
1,205,951	-				+1.3
1,205,969	+				-0.1
1,205,983	+				+0.8
1,205,983	+				+2.7
1,205,983	+				+1.2
1,205,991	-				+0.0
1,205,991	-				-1.1
1,205,991	-				-2.6
1,205,991	-				-0.7
1,205,999	-				+0.4
1,205,999	-				+0.8
1,206,028	+				+0.2
1,206,036	-				-0.9
1,206,036	-				+0.3
1,206,085	+				+1.2
1,206,092	+				+1.2
1,206,092	+				-1.4
1,206,094	+				-0.2
1,206,094	+				+0.2
1,206,094	+				-0.2
1,206,094	+				+1.3
1,206,102	-				-0.1
1,206,102	-				-0.4
1,206,102	-				-0.4
1,206,102	-				+0.3
1,206,158	+				-1.5
1,206,166	-				-1.7
1,206,196	-				-1.4
1,206,229	-				-0.2
1,206,252	-				+1.1
1,206,252	-				-0.0
1,206,252	-				+0.8
1,206,281	-				+0.1
1,206,347	+				+0.7
1,206,355	-				-0.5
1,206,357	+				-1.2
1,206,421	-		PGA1_c11660	0.11	+0.3
1,206,486	+		PGA1_c11660	0.14	+1.1
1,206,540	-		PGA1_c11660	0.16	-1.5
1,206,550	-		PGA1_c11660	0.17	+0.5
1,206,616	+		PGA1_c11660	0.19	+0.8
1,206,623	+		PGA1_c11660	0.20	+0.3
1,206,765	-		PGA1_c11660	0.26	+0.4
1,206,874	+		PGA1_c11660	0.31	+1.1
1,206,932	+		PGA1_c11660	0.33	+0.8
1,206,940	-		PGA1_c11660	0.34	+0.9
1,206,940	-		PGA1_c11660	0.34	-0.5
1,206,971	+		PGA1_c11660	0.35	-1.0
1,206,997	-		PGA1_c11660	0.36	+1.2
1,207,040	+		PGA1_c11660	0.38	+1.7
1,207,090	-		PGA1_c11660	0.40	-1.1
1,207,117	+		PGA1_c11660	0.41	-1.1
1,207,188	+		PGA1_c11660	0.44	-0.5
1,207,234	-		PGA1_c11660	0.46	-2.2
1,207,247	+		PGA1_c11660	0.47	-3.1
1,207,247	+		PGA1_c11660	0.47	+1.0
1,207,255	-		PGA1_c11660	0.47	+1.5
1,207,264	+		PGA1_c11660	0.48	-0.3
1,207,301	+		PGA1_c11660	0.49	+0.3
1,207,337	+		PGA1_c11660	0.51	+2.8
1,207,339	+		PGA1_c11660	0.51	-1.3
1,207,347	-		PGA1_c11660	0.51	-0.4
1,207,347	-		PGA1_c11660	0.51	+0.2
1,207,369	+		PGA1_c11660	0.52	+1.4
1,207,382	-		PGA1_c11660	0.53	+0.5
1,207,401	+		PGA1_c11660	0.54	-1.4
1,207,401	+		PGA1_c11660	0.54	+0.2
1,207,401	+		PGA1_c11660	0.54	+0.8
1,207,404	-		PGA1_c11660	0.54	+2.0
1,207,408	+		PGA1_c11660	0.54	+0.1
1,207,408	-		PGA1_c11660	0.54	+0.5
1,207,416	-		PGA1_c11660	0.54	+0.5
1,207,481	+		PGA1_c11660	0.57	+1.2
1,207,481	+		PGA1_c11660	0.57	+0.7
1,207,481	+		PGA1_c11660	0.57	+2.4
1,207,481	+		PGA1_c11660	0.57	-0.4
1,207,481	+		PGA1_c11660	0.57	-2.3
1,207,481	+		PGA1_c11660	0.57	-1.0
1,207,481	+		PGA1_c11660	0.57	-0.1
1,207,481	+		PGA1_c11660	0.57	-0.6
1,207,481	+		PGA1_c11660	0.57	-0.6
1,207,489	-		PGA1_c11660	0.57	-0.3
1,207,489	-		PGA1_c11660	0.57	-0.1
1,207,489	-		PGA1_c11660	0.57	+0.3
1,207,489	-		PGA1_c11660	0.57	-0.4
1,207,519	+		PGA1_c11660	0.59	+1.2
1,207,519	+		PGA1_c11660	0.59	+0.2
1,207,519	+		PGA1_c11660	0.59	+0.1
1,207,524	+		PGA1_c11660	0.59	+0.8
1,207,527	-		PGA1_c11660	0.59	+0.6
1,207,527	-		PGA1_c11660	0.59	-2.4
1,207,529	+		PGA1_c11660	0.59	+0.2
1,207,537	-		PGA1_c11660	0.59	+0.7
1,207,731	+		PGA1_c11660	0.68	+0.3
1,207,731	+		PGA1_c11660	0.68	+1.2
1,207,775	+		PGA1_c11660	0.70	+0.1
1,207,780	+		PGA1_c11660	0.70	+0.7
1,207,919	+		PGA1_c11660	0.76	-0.3
1,207,932	+		PGA1_c11660	0.77	+1.0
1,207,940	-		PGA1_c11660	0.77	+1.3
1,208,022	-		PGA1_c11660	0.81	+1.6
1,208,030	+		PGA1_c11660	0.81	-1.1
1,208,204	+		PGA1_c11660	0.88	-0.5
1,208,222	+		PGA1_c11660	0.89	-0.0
1,208,231	-		PGA1_c11660	0.90	+0.2
1,208,231	-		PGA1_c11660	0.90	-0.1
1,208,369	-				+0.4
1,208,408	+				+0.1
1,208,444	-				+0.8
1,208,471	-				-0.2
1,208,471	-				-0.1
1,208,675	+		PGA1_c11670	0.19	-1.1
1,208,766	+		PGA1_c11670	0.27	+0.9
1,208,810	+		PGA1_c11670	0.31	-0.4
1,208,861	+		PGA1_c11670	0.35	-2.0
1,208,940	+		PGA1_c11670	0.42	+0.6
1,208,945	+		PGA1_c11670	0.42	-0.6
1,208,948	-		PGA1_c11670	0.42	-0.2
1,209,118	-		PGA1_c11670	0.57	-0.5
1,209,152	+		PGA1_c11670	0.59	-2.0
1,209,189	+		PGA1_c11670	0.63	+2.5
1,209,228	+		PGA1_c11670	0.66	+1.0
1,209,236	-		PGA1_c11670	0.66	-1.4
1,209,237	-		PGA1_c11670	0.67	+0.4
1,209,238	+		PGA1_c11670	0.67	-1.1
1,209,246	-		PGA1_c11670	0.67	-1.2
1,209,295	+		PGA1_c11670	0.71	+0.5
1,209,300	+		PGA1_c11670	0.72	+0.5
1,209,308	-		PGA1_c11670	0.73	-0.2
1,209,308	-		PGA1_c11670	0.73	-0.1
1,209,308	-		PGA1_c11670	0.73	+1.8
1,209,347	+		PGA1_c11670	0.76	-0.1
1,209,355	-		PGA1_c11670	0.77	+0.4
1,209,388	-		PGA1_c11670	0.79	+0.9
1,209,392	-		PGA1_c11670	0.80	-1.0