Strain Fitness in Marinobacter adhaerens HP15 around HP15_1033

Experiment: m.b. Choline Lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1031 and HP15_1032 overlap by 4 nucleotidesHP15_1032 and HP15_1033 are separated by 92 nucleotidesHP15_1033 and HP15_1034 are separated by 150 nucleotides HP15_1031: HP15_1031 - UspA domain protein, at 1,049,579 to 1,050,505 _1031 HP15_1032: HP15_1032 - phospholipase, patatin family, at 1,050,502 to 1,051,368 _1032 HP15_1033: HP15_1033 - flavoprotein, NADB Rossmann superfamily, at 1,051,461 to 1,052,642 _1033 HP15_1034: HP15_1034 - Zn-dependent alcohol dehydrogenase, at 1,052,793 to 1,053,851 _1034 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -2 -1 0 1at 1050.530 kb on + strandat 1050.530 kb on + strandat 1050.530 kb on + strandat 1050.543 kb on - strandat 1050.683 kb on - strand, within HP15_1032at 1050.790 kb on - strand, within HP15_1032at 1050.824 kb on + strand, within HP15_1032at 1050.883 kb on - strand, within HP15_1032at 1050.921 kb on - strand, within HP15_1032at 1050.934 kb on - strand, within HP15_1032at 1050.966 kb on - strand, within HP15_1032at 1050.987 kb on + strand, within HP15_1032at 1051.000 kb on - strand, within HP15_1032at 1051.039 kb on + strand, within HP15_1032at 1051.120 kb on - strand, within HP15_1032at 1051.253 kb on + strand, within HP15_1032at 1051.261 kb on - strand, within HP15_1032at 1051.276 kb on + strand, within HP15_1032at 1051.285 kb on - strandat 1051.392 kb on - strandat 1051.401 kb on + strandat 1051.409 kb on - strandat 1051.420 kb on - strandat 1051.582 kb on + strand, within HP15_1033at 1051.633 kb on - strand, within HP15_1033at 1051.680 kb on + strand, within HP15_1033at 1051.785 kb on + strand, within HP15_1033at 1051.790 kb on + strand, within HP15_1033at 1051.793 kb on - strand, within HP15_1033at 1051.798 kb on - strand, within HP15_1033at 1051.798 kb on - strand, within HP15_1033at 1051.887 kb on + strand, within HP15_1033at 1051.933 kb on + strand, within HP15_1033at 1052.071 kb on - strand, within HP15_1033at 1052.077 kb on - strand, within HP15_1033at 1052.187 kb on + strand, within HP15_1033at 1052.397 kb on + strand, within HP15_1033at 1052.410 kb on - strand, within HP15_1033at 1052.415 kb on - strand, within HP15_1033at 1052.555 kb on - strandat 1052.584 kb on + strandat 1052.589 kb on + strandat 1052.589 kb on + strandat 1052.589 kb on + strandat 1052.589 kb on + strandat 1052.592 kb on - strandat 1052.597 kb on - strandat 1052.646 kb on - strandat 1052.646 kb on - strandat 1052.646 kb on - strandat 1052.698 kb on + strandat 1052.784 kb on + strandat 1052.861 kb on + strandat 1052.878 kb on - strandat 1053.177 kb on - strand, within HP15_1034at 1053.354 kb on + strand, within HP15_1034at 1053.370 kb on + strand, within HP15_1034at 1053.370 kb on + strand, within HP15_1034at 1053.448 kb on - strand, within HP15_1034at 1053.497 kb on - strand, within HP15_1034at 1053.504 kb on + strand, within HP15_1034at 1053.531 kb on - strand, within HP15_1034at 1053.608 kb on + strand, within HP15_1034

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM
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1,050,530 + +0.7
1,050,530 + -0.7
1,050,530 + -0.6
1,050,543 - +0.4
1,050,683 - HP15_1032 0.21 -0.8
1,050,790 - HP15_1032 0.33 -0.4
1,050,824 + HP15_1032 0.37 -0.6
1,050,883 - HP15_1032 0.44 +1.4
1,050,921 - HP15_1032 0.48 +0.0
1,050,934 - HP15_1032 0.50 +0.2
1,050,966 - HP15_1032 0.54 -0.0
1,050,987 + HP15_1032 0.56 +0.2
1,051,000 - HP15_1032 0.57 +0.1
1,051,039 + HP15_1032 0.62 -0.6
1,051,120 - HP15_1032 0.71 +0.3
1,051,253 + HP15_1032 0.87 -0.5
1,051,261 - HP15_1032 0.88 +0.0
1,051,276 + HP15_1032 0.89 -1.2
1,051,285 - -0.3
1,051,392 - +0.7
1,051,401 + +0.2
1,051,409 - -0.7
1,051,420 - +1.3
1,051,582 + HP15_1033 0.10 +1.1
1,051,633 - HP15_1033 0.15 -0.1
1,051,680 + HP15_1033 0.19 -1.3
1,051,785 + HP15_1033 0.27 +0.3
1,051,790 + HP15_1033 0.28 -0.9
1,051,793 - HP15_1033 0.28 +0.4
1,051,798 - HP15_1033 0.29 -0.8
1,051,798 - HP15_1033 0.29 -0.7
1,051,887 + HP15_1033 0.36 -0.4
1,051,933 + HP15_1033 0.40 -0.1
1,052,071 - HP15_1033 0.52 -1.1
1,052,077 - HP15_1033 0.52 -1.6
1,052,187 + HP15_1033 0.61 +0.4
1,052,397 + HP15_1033 0.79 -1.0
1,052,410 - HP15_1033 0.80 -0.4
1,052,415 - HP15_1033 0.81 +0.9
1,052,555 - +0.7
1,052,584 + -0.5
1,052,589 + +0.4
1,052,589 + -2.4
1,052,589 + -0.4
1,052,589 + -0.5
1,052,592 - +0.9
1,052,597 - -1.8
1,052,646 - +1.6
1,052,646 - -0.3
1,052,646 - +0.6
1,052,698 + -0.0
1,052,784 + +0.9
1,052,861 + -0.0
1,052,878 - -0.1
1,053,177 - HP15_1034 0.36 -0.3
1,053,354 + HP15_1034 0.53 -0.3
1,053,370 + HP15_1034 0.54 +0.4
1,053,370 + HP15_1034 0.54 -0.5
1,053,448 - HP15_1034 0.62 +0.5
1,053,497 - HP15_1034 0.66 +0.2
1,053,504 + HP15_1034 0.67 -0.4
1,053,531 - HP15_1034 0.70 +0.6
1,053,608 + HP15_1034 0.77 -0.3

Or see this region's nucleotide sequence