Experiment: Aluminum chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3533 and Sama_3534 are separated by 19 nucleotides Sama_3534 and Sama_3535 are separated by 49 nucleotides Sama_3535 and Sama_3536 are separated by 3 nucleotides Sama_3536 and Sama_3537 overlap by 27 nucleotides
Sama_3533: Sama_3533 - hypothetical protein (RefSeq), at 4,165,127 to 4,165,651
_3533
Sama_3534: Sama_3534 - response regulator receiver protein (RefSeq), at 4,165,671 to 4,166,348
_3534
Sama_3535: Sama_3535 - sensor histidine kinase (RefSeq), at 4,166,398 to 4,167,657
_3535
Sama_3536: Sama_3536 - pseudouridine synthase RluA-like protein (RefSeq), at 4,167,661 to 4,168,335
_3536
Sama_3537: Sama_3537 - GGDEF family protein (RefSeq), at 4,168,309 to 4,169,490
_3537
Position (kb) 4166
4167
4168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4165.402 kb on + strand, within Sama_3533 at 4165.618 kb on + strand at 4165.659 kb on + strand at 4165.659 kb on + strand at 4166.346 kb on + strand at 4166.346 kb on + strand at 4167.655 kb on + strand at 4167.655 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.664 kb on + strand at 4167.664 kb on + strand at 4167.664 kb on + strand at 4167.752 kb on + strand, within Sama_3536 at 4167.752 kb on + strand, within Sama_3536 at 4167.752 kb on + strand, within Sama_3536 at 4167.752 kb on + strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.782 kb on + strand, within Sama_3536 at 4167.783 kb on - strand, within Sama_3536 at 4167.783 kb on - strand, within Sama_3536 at 4167.790 kb on + strand, within Sama_3536 at 4167.833 kb on + strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.901 kb on + strand, within Sama_3536 at 4167.901 kb on + strand, within Sama_3536 at 4167.901 kb on + strand, within Sama_3536 at 4167.902 kb on - strand, within Sama_3536 at 4167.902 kb on - strand, within Sama_3536 at 4167.902 kb on - strand, within Sama_3536 at 4167.902 kb on - strand, within Sama_3536 at 4167.904 kb on + strand, within Sama_3536 at 4167.904 kb on + strand, within Sama_3536 at 4167.905 kb on - strand, within Sama_3536 at 4167.905 kb on - strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.992 kb on + strand, within Sama_3536 at 4167.992 kb on + strand, within Sama_3536 at 4167.993 kb on - strand, within Sama_3536 at 4168.055 kb on + strand, within Sama_3536 at 4168.056 kb on - strand, within Sama_3536 at 4168.056 kb on - strand, within Sama_3536 at 4168.056 kb on - strand, within Sama_3536 at 4168.063 kb on + strand, within Sama_3536 at 4168.063 kb on + strand, within Sama_3536 at 4168.063 kb on + strand, within Sama_3536 at 4168.063 kb on + strand, within Sama_3536 at 4168.134 kb on - strand, within Sama_3536 at 4168.151 kb on - strand, within Sama_3536 at 4168.177 kb on + strand, within Sama_3536 at 4168.177 kb on + strand, within Sama_3536 at 4168.178 kb on - strand, within Sama_3536 at 4168.211 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.274 kb on + strand at 4168.274 kb on + strand at 4168.274 kb on + strand at 4168.275 kb on - strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.456 kb on + strand, within Sama_3537 at 4168.456 kb on + strand, within Sama_3537 at 4168.457 kb on - strand, within Sama_3537 at 4168.536 kb on + strand, within Sama_3537 at 4168.536 kb on + strand, within Sama_3537 at 4168.537 kb on - strand, within Sama_3537 at 4168.537 kb on - strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.593 kb on + strand, within Sama_3537 at 4168.593 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.618 kb on + strand, within Sama_3537 at 4168.618 kb on + strand, within Sama_3537 at 4168.619 kb on - strand, within Sama_3537 at 4168.621 kb on + strand, within Sama_3537 at 4168.621 kb on + strand, within Sama_3537 at 4168.622 kb on - strand, within Sama_3537 at 4168.622 kb on - strand, within Sama_3537
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 0.625 mM remove 4,165,402 + Sama_3533 0.52 -1.5 4,165,618 + +0.6 4,165,659 + +0.5 4,165,659 + +0.4 4,166,346 + -1.0 4,166,346 + -1.5 4,167,655 + -0.6 4,167,655 + +0.0 4,167,660 + -0.4 4,167,660 + -0.8 4,167,660 + +0.4 4,167,660 + -0.1 4,167,660 + -0.4 4,167,660 + +0.3 4,167,660 + +0.0 4,167,660 + -1.2 4,167,661 - -0.4 4,167,661 - +0.6 4,167,661 - -0.1 4,167,661 - -0.3 4,167,661 - -0.1 4,167,661 - +0.6 4,167,661 - -0.5 4,167,661 - -0.2 4,167,661 - -0.5 4,167,661 - -0.2 4,167,661 - -0.1 4,167,661 - +0.7 4,167,664 + +0.0 4,167,664 + +1.6 4,167,664 + +0.9 4,167,752 + Sama_3536 0.13 +0.7 4,167,752 + Sama_3536 0.13 +0.3 4,167,752 + Sama_3536 0.13 +0.5 4,167,752 + Sama_3536 0.13 -0.9 4,167,753 - Sama_3536 0.14 -0.5 4,167,753 - Sama_3536 0.14 +0.3 4,167,753 - Sama_3536 0.14 +0.5 4,167,753 - Sama_3536 0.14 +1.3 4,167,753 - Sama_3536 0.14 +0.2 4,167,753 - Sama_3536 0.14 -0.9 4,167,782 + Sama_3536 0.18 -0.4 4,167,783 - Sama_3536 0.18 -1.3 4,167,783 - Sama_3536 0.18 +0.3 4,167,790 + Sama_3536 0.19 +0.6 4,167,833 + Sama_3536 0.25 -0.4 4,167,834 - Sama_3536 0.26 +0.7 4,167,834 - Sama_3536 0.26 -1.0 4,167,834 - Sama_3536 0.26 -1.0 4,167,834 - Sama_3536 0.26 -0.2 4,167,834 - Sama_3536 0.26 -0.2 4,167,901 + Sama_3536 0.36 +0.8 4,167,901 + Sama_3536 0.36 -0.4 4,167,901 + Sama_3536 0.36 -2.3 4,167,902 - Sama_3536 0.36 -0.9 4,167,902 - Sama_3536 0.36 +0.2 4,167,902 - Sama_3536 0.36 -0.7 4,167,902 - Sama_3536 0.36 +0.4 4,167,904 + Sama_3536 0.36 -0.2 4,167,904 + Sama_3536 0.36 -0.8 4,167,905 - Sama_3536 0.36 -0.4 4,167,905 - Sama_3536 0.36 +0.0 4,167,960 + Sama_3536 0.44 +0.2 4,167,960 + Sama_3536 0.44 -1.4 4,167,960 + Sama_3536 0.44 -0.7 4,167,960 + Sama_3536 0.44 -0.2 4,167,960 + Sama_3536 0.44 +1.0 4,167,985 + Sama_3536 0.48 +1.6 4,167,985 + Sama_3536 0.48 +0.5 4,167,985 + Sama_3536 0.48 +0.3 4,167,985 + Sama_3536 0.48 +0.9 4,167,985 + Sama_3536 0.48 -0.8 4,167,986 - Sama_3536 0.48 -0.6 4,167,986 - Sama_3536 0.48 +0.2 4,167,986 - Sama_3536 0.48 -0.8 4,167,986 - Sama_3536 0.48 +0.2 4,167,986 - Sama_3536 0.48 -2.0 4,167,986 - Sama_3536 0.48 +0.4 4,167,992 + Sama_3536 0.49 -0.5 4,167,992 + Sama_3536 0.49 -1.0 4,167,993 - Sama_3536 0.49 +1.8 4,168,055 + Sama_3536 0.58 -0.5 4,168,056 - Sama_3536 0.59 +0.9 4,168,056 - Sama_3536 0.59 +2.5 4,168,056 - Sama_3536 0.59 -0.4 4,168,063 + Sama_3536 0.60 +0.6 4,168,063 + Sama_3536 0.60 +0.2 4,168,063 + Sama_3536 0.60 -0.4 4,168,063 + Sama_3536 0.60 +0.3 4,168,134 - Sama_3536 0.70 +1.6 4,168,151 - Sama_3536 0.73 -0.7 4,168,177 + Sama_3536 0.76 -0.3 4,168,177 + Sama_3536 0.76 -0.1 4,168,178 - Sama_3536 0.77 +1.6 4,168,211 + Sama_3536 0.81 -0.4 4,168,236 + Sama_3536 0.85 -0.3 4,168,236 + Sama_3536 0.85 -0.4 4,168,236 + Sama_3536 0.85 -0.9 4,168,236 + Sama_3536 0.85 +0.3 4,168,236 + Sama_3536 0.85 -0.7 4,168,236 + Sama_3536 0.85 -0.3 4,168,274 + -1.0 4,168,274 + +0.4 4,168,274 + -0.7 4,168,275 - -1.6 4,168,373 + +1.6 4,168,373 + -1.8 4,168,373 + -0.2 4,168,373 + -0.4 4,168,373 + -0.7 4,168,373 + +0.6 4,168,373 + +0.0 4,168,374 - -0.4 4,168,374 - -0.4 4,168,374 - +0.5 4,168,374 - -0.2 4,168,374 - -0.8 4,168,374 - -0.2 4,168,374 - -1.5 4,168,374 - +0.7 4,168,456 + Sama_3537 0.12 -0.4 4,168,456 + Sama_3537 0.12 -1.5 4,168,457 - Sama_3537 0.13 +0.2 4,168,536 + Sama_3537 0.19 +0.8 4,168,536 + Sama_3537 0.19 -0.3 4,168,537 - Sama_3537 0.19 +0.0 4,168,537 - Sama_3537 0.19 -1.0 4,168,588 + Sama_3537 0.24 +0.2 4,168,588 + Sama_3537 0.24 -0.7 4,168,588 + Sama_3537 0.24 -0.1 4,168,588 + Sama_3537 0.24 +0.4 4,168,588 + Sama_3537 0.24 -0.2 4,168,588 + Sama_3537 0.24 -0.3 4,168,588 + Sama_3537 0.24 +0.1 4,168,589 - Sama_3537 0.24 +0.1 4,168,589 - Sama_3537 0.24 -0.3 4,168,589 - Sama_3537 0.24 +0.2 4,168,589 - Sama_3537 0.24 -0.6 4,168,589 - Sama_3537 0.24 -0.1 4,168,589 - Sama_3537 0.24 -1.5 4,168,589 - Sama_3537 0.24 -0.5 4,168,593 + Sama_3537 0.24 +1.1 4,168,593 + Sama_3537 0.24 +0.0 4,168,611 + Sama_3537 0.26 +0.1 4,168,611 + Sama_3537 0.26 -0.2 4,168,611 + Sama_3537 0.26 +0.5 4,168,611 + Sama_3537 0.26 +0.7 4,168,611 + Sama_3537 0.26 +0.0 4,168,612 - Sama_3537 0.26 -0.1 4,168,612 - Sama_3537 0.26 +0.3 4,168,612 - Sama_3537 0.26 -1.0 4,168,612 - Sama_3537 0.26 +0.9 4,168,612 - Sama_3537 0.26 -0.4 4,168,612 - Sama_3537 0.26 +0.6 4,168,618 + Sama_3537 0.26 -1.0 4,168,618 + Sama_3537 0.26 +1.6 4,168,619 - Sama_3537 0.26 -0.4 4,168,621 + Sama_3537 0.26 +1.2 4,168,621 + Sama_3537 0.26 -0.5 4,168,622 - Sama_3537 0.26 -0.4 4,168,622 - Sama_3537 0.26 -0.3
Or see this region's nucleotide sequence