Strain Fitness in Shewanella amazonensis SB2B around Sama_0060

Experiment: Aluminum chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0059 and Sama_0060 are separated by 5 nucleotidesSama_0060 and Sama_0061 are separated by 273 nucleotidesSama_0061 and Sama_0062 are separated by 219 nucleotides Sama_0059: Sama_0059 - M24/M37 family peptidase (RefSeq), at 64,007 to 65,143 _0059 Sama_0060: Sama_0060 - phosphoglyceromutase (RefSeq), at 65,149 to 66,690 _0060 Sama_0061: Sama_0061 - rhodanese-like protein (RefSeq), at 66,964 to 67,356 _0061 Sama_0062: Sama_0062 - preprotein translocase subunit SecB (RefSeq), at 67,576 to 68,055 _0062 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.170 kb on + strand, within Sama_0059at 64.171 kb on - strand, within Sama_0059at 64.171 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.208 kb on + strand, within Sama_0059at 64.208 kb on + strand, within Sama_0059at 64.209 kb on - strand, within Sama_0059at 64.214 kb on - strand, within Sama_0059at 64.239 kb on + strand, within Sama_0059at 64.239 kb on + strand, within Sama_0059at 64.239 kb on + strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.241 kb on + strand, within Sama_0059at 64.241 kb on + strand, within Sama_0059at 64.242 kb on - strand, within Sama_0059at 64.269 kb on - strand, within Sama_0059at 64.269 kb on - strand, within Sama_0059at 64.331 kb on - strand, within Sama_0059at 64.349 kb on + strand, within Sama_0059at 64.349 kb on + strand, within Sama_0059at 64.350 kb on - strand, within Sama_0059at 64.400 kb on + strand, within Sama_0059at 64.401 kb on - strand, within Sama_0059at 64.409 kb on - strand, within Sama_0059at 64.420 kb on + strand, within Sama_0059at 64.430 kb on + strand, within Sama_0059at 64.453 kb on + strand, within Sama_0059at 64.454 kb on - strand, within Sama_0059at 64.470 kb on - strand, within Sama_0059at 64.470 kb on - strand, within Sama_0059at 64.505 kb on + strand, within Sama_0059at 64.505 kb on + strand, within Sama_0059at 64.693 kb on + strand, within Sama_0059at 64.694 kb on - strand, within Sama_0059at 64.707 kb on + strand, within Sama_0059at 64.707 kb on + strand, within Sama_0059at 64.708 kb on - strand, within Sama_0059at 64.727 kb on + strand, within Sama_0059at 64.728 kb on - strand, within Sama_0059at 64.728 kb on - strand, within Sama_0059at 64.728 kb on - strand, within Sama_0059at 64.788 kb on + strand, within Sama_0059at 64.879 kb on + strand, within Sama_0059at 64.900 kb on + strand, within Sama_0059at 64.900 kb on + strand, within Sama_0059at 64.901 kb on - strand, within Sama_0059at 64.901 kb on - strand, within Sama_0059at 64.901 kb on - strand, within Sama_0059at 64.957 kb on + strand, within Sama_0059at 64.958 kb on - strand, within Sama_0059at 64.988 kb on - strand, within Sama_0059at 65.041 kb on + strandat 65.042 kb on - strandat 65.090 kb on + strandat 65.130 kb on - strandat 65.130 kb on - strandat 65.130 kb on - strandat 66.715 kb on - strandat 66.752 kb on + strandat 66.752 kb on + strandat 66.752 kb on + strandat 66.752 kb on + strandat 66.752 kb on + strandat 66.753 kb on - strandat 66.753 kb on - strandat 66.755 kb on + strandat 66.755 kb on + strandat 66.756 kb on - strandat 66.756 kb on - strandat 66.758 kb on + strandat 66.758 kb on + strandat 66.759 kb on - strandat 66.759 kb on - strandat 66.832 kb on + strandat 66.833 kb on - strandat 66.833 kb on - strandat 66.833 kb on - strandat 66.876 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.882 kb on + strandat 66.882 kb on + strandat 66.883 kb on - strandat 66.883 kb on - strandat 66.883 kb on - strandat 66.907 kb on + strandat 66.908 kb on - strandat 66.913 kb on + strandat 66.914 kb on - strandat 66.914 kb on - strandat 66.924 kb on + strandat 66.924 kb on + strandat 66.937 kb on + strandat 66.937 kb on + strandat 66.937 kb on + strandat 66.938 kb on - strandat 66.938 kb on - strandat 67.008 kb on + strand, within Sama_0061at 67.008 kb on + strand, within Sama_0061at 67.008 kb on + strand, within Sama_0061at 67.009 kb on - strand, within Sama_0061at 67.009 kb on - strand, within Sama_0061at 67.017 kb on + strand, within Sama_0061at 67.017 kb on + strand, within Sama_0061at 67.023 kb on + strand, within Sama_0061at 67.024 kb on - strand, within Sama_0061at 67.024 kb on - strand, within Sama_0061at 67.024 kb on - strand, within Sama_0061at 67.024 kb on - strand, within Sama_0061at 67.097 kb on + strand, within Sama_0061at 67.098 kb on - strand, within Sama_0061at 67.098 kb on - strand, within Sama_0061at 67.111 kb on - strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.311 kb on + strand, within Sama_0061at 67.354 kb on + strandat 67.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 0.625 mM
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64,170 + Sama_0059 0.14 -1.1
64,171 - Sama_0059 0.14 -0.1
64,171 - Sama_0059 0.14 -0.9
64,183 - Sama_0059 0.15 +0.7
64,183 - Sama_0059 0.15 +0.2
64,183 - Sama_0059 0.15 +0.1
64,183 - Sama_0059 0.15 +1.4
64,183 - Sama_0059 0.15 +0.1
64,183 - Sama_0059 0.15 -1.5
64,208 + Sama_0059 0.18 -0.2
64,208 + Sama_0059 0.18 -0.6
64,209 - Sama_0059 0.18 -1.0
64,214 - Sama_0059 0.18 -0.4
64,239 + Sama_0059 0.20 -1.0
64,239 + Sama_0059 0.20 +0.6
64,239 + Sama_0059 0.20 -2.0
64,240 - Sama_0059 0.20 -0.4
64,240 - Sama_0059 0.20 +0.2
64,240 - Sama_0059 0.20 +1.0
64,240 - Sama_0059 0.20 +0.8
64,240 - Sama_0059 0.20 -1.1
64,240 - Sama_0059 0.20 +0.2
64,240 - Sama_0059 0.20 -1.0
64,241 + Sama_0059 0.21 -1.7
64,241 + Sama_0059 0.21 -1.1
64,242 - Sama_0059 0.21 -0.0
64,269 - Sama_0059 0.23 +0.8
64,269 - Sama_0059 0.23 -0.3
64,331 - Sama_0059 0.28 +0.4
64,349 + Sama_0059 0.30 -0.7
64,349 + Sama_0059 0.30 +0.6
64,350 - Sama_0059 0.30 +0.4
64,400 + Sama_0059 0.35 +0.2
64,401 - Sama_0059 0.35 +0.5
64,409 - Sama_0059 0.35 +1.0
64,420 + Sama_0059 0.36 +0.5
64,430 + Sama_0059 0.37 +0.6
64,453 + Sama_0059 0.39 -0.4
64,454 - Sama_0059 0.39 +0.9
64,470 - Sama_0059 0.41 -0.4
64,470 - Sama_0059 0.41 -0.5
64,505 + Sama_0059 0.44 -0.6
64,505 + Sama_0059 0.44 +1.6
64,693 + Sama_0059 0.60 +0.9
64,694 - Sama_0059 0.60 -0.9
64,707 + Sama_0059 0.62 +0.4
64,707 + Sama_0059 0.62 +2.4
64,708 - Sama_0059 0.62 +0.3
64,727 + Sama_0059 0.63 -1.1
64,728 - Sama_0059 0.63 -0.3
64,728 - Sama_0059 0.63 -0.3
64,728 - Sama_0059 0.63 -1.6
64,788 + Sama_0059 0.69 +0.6
64,879 + Sama_0059 0.77 -0.1
64,900 + Sama_0059 0.79 -1.5
64,900 + Sama_0059 0.79 -0.4
64,901 - Sama_0059 0.79 -2.1
64,901 - Sama_0059 0.79 -0.6
64,901 - Sama_0059 0.79 +0.2
64,957 + Sama_0059 0.84 -0.3
64,958 - Sama_0059 0.84 +0.2
64,988 - Sama_0059 0.86 +0.4
65,041 + -0.0
65,042 - +0.0
65,090 + -0.0
65,130 - -0.3
65,130 - +0.8
65,130 - -0.6
66,715 - -0.4
66,752 + -1.0
66,752 + +1.0
66,752 + -1.5
66,752 + -1.0
66,752 + -3.0
66,753 - -0.5
66,753 - +0.6
66,755 + -0.8
66,755 + -1.2
66,756 - +1.1
66,756 - +0.2
66,758 + -1.1
66,758 + +1.2
66,759 - -0.4
66,759 - -0.7
66,832 + +0.7
66,833 - -0.4
66,833 - -1.3
66,833 - +0.3
66,876 + -0.7
66,880 + -0.8
66,880 + +1.7
66,880 + +0.0
66,880 + -0.3
66,880 + -0.1
66,880 + +0.3
66,880 + -1.1
66,880 + +0.6
66,880 + +0.0
66,881 - +0.3
66,881 - -1.5
66,881 - -1.3
66,881 - -1.5
66,881 - -0.2
66,881 - +1.6
66,882 + -0.3
66,882 + +0.0
66,883 - -0.4
66,883 - -0.4
66,883 - -0.6
66,907 + +0.9
66,908 - -0.4
66,913 + -0.2
66,914 - -0.4
66,914 - +0.1
66,924 + -0.4
66,924 + -0.4
66,937 + +0.6
66,937 + -1.0
66,937 + -0.7
66,938 - -0.1
66,938 - -1.1
67,008 + Sama_0061 0.11 +0.4
67,008 + Sama_0061 0.11 +0.4
67,008 + Sama_0061 0.11 -0.4
67,009 - Sama_0061 0.11 -0.4
67,009 - Sama_0061 0.11 -1.7
67,017 + Sama_0061 0.13 -0.6
67,017 + Sama_0061 0.13 -0.9
67,023 + Sama_0061 0.15 +0.4
67,024 - Sama_0061 0.15 -0.0
67,024 - Sama_0061 0.15 +0.3
67,024 - Sama_0061 0.15 +0.3
67,024 - Sama_0061 0.15 -0.4
67,097 + Sama_0061 0.34 -0.8
67,098 - Sama_0061 0.34 -0.1
67,098 - Sama_0061 0.34 -0.4
67,111 - Sama_0061 0.37 -0.9
67,218 + Sama_0061 0.65 -0.2
67,218 + Sama_0061 0.65 +0.7
67,218 + Sama_0061 0.65 +0.1
67,218 + Sama_0061 0.65 +0.4
67,218 + Sama_0061 0.65 -0.7
67,218 + Sama_0061 0.65 +0.1
67,218 + Sama_0061 0.65 +0.5
67,218 + Sama_0061 0.65 -0.3
67,218 + Sama_0061 0.65 +0.0
67,220 + Sama_0061 0.65 -2.4
67,220 + Sama_0061 0.65 -0.1
67,220 + Sama_0061 0.65 -0.0
67,220 + Sama_0061 0.65 -0.2
67,220 + Sama_0061 0.65 +0.8
67,220 + Sama_0061 0.65 +0.8
67,220 + Sama_0061 0.65 -1.5
67,292 + Sama_0061 0.83 +1.4
67,292 + Sama_0061 0.83 -0.7
67,292 + Sama_0061 0.83 -0.2
67,292 + Sama_0061 0.83 -1.4
67,292 + Sama_0061 0.83 +0.5
67,292 + Sama_0061 0.83 -0.8
67,294 + Sama_0061 0.84 -0.9
67,294 + Sama_0061 0.84 +0.2
67,294 + Sama_0061 0.84 +0.7
67,294 + Sama_0061 0.84 +0.0
67,294 + Sama_0061 0.84 +0.2
67,311 + Sama_0061 0.88 +1.1
67,354 + -1.8
67,408 + +0.4

Or see this region's nucleotide sequence