Experiment: Benzethonium chloride 0.00625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0193 and Sama_0194 are separated by 122 nucleotides Sama_0194 and Sama_0195 are separated by 8 nucleotides Sama_0195 and Sama_R0004 are separated by 558 nucleotides
Sama_0193: Sama_0193 - tRNA (uracil-5-)-methyltransferase (RefSeq), at 221,311 to 222,408
_0193
Sama_0194: Sama_0194 - glutamate racemase (RefSeq), at 222,531 to 223,331
_0194
Sama_0195: Sama_0195 - RNA-binding protein (RefSeq), at 223,340 to 223,795
_0195
Sama_R0004: Sama_R0004 - 16S ribosomal RNA (RefSeq), at 224,354 to 225,890
_R0004
Position (kb) 223
224 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.377 kb on + strand at 222.377 kb on + strand at 222.378 kb on - strand at 222.378 kb on - strand at 222.378 kb on - strand at 222.378 kb on - strand at 222.427 kb on + strand at 222.447 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.490 kb on + strand at 222.490 kb on + strand at 222.495 kb on + strand at 222.495 kb on + strand at 222.495 kb on + strand at 223.312 kb on + strand at 223.313 kb on - strand at 223.313 kb on - strand at 223.313 kb on - strand at 223.322 kb on + strand at 223.322 kb on + strand at 223.323 kb on - strand at 223.323 kb on - strand at 223.323 kb on - strand at 223.389 kb on - strand, within Sama_0195 at 223.389 kb on - strand, within Sama_0195 at 223.394 kb on + strand, within Sama_0195 at 223.394 kb on + strand, within Sama_0195 at 223.394 kb on + strand, within Sama_0195 at 223.394 kb on + strand, within Sama_0195 at 223.395 kb on - strand, within Sama_0195 at 223.395 kb on - strand, within Sama_0195 at 223.395 kb on - strand, within Sama_0195 at 223.416 kb on + strand, within Sama_0195 at 223.416 kb on + strand, within Sama_0195 at 223.416 kb on + strand, within Sama_0195 at 223.417 kb on - strand, within Sama_0195 at 223.417 kb on - strand, within Sama_0195 at 223.525 kb on + strand, within Sama_0195 at 223.537 kb on - strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.618 kb on + strand, within Sama_0195 at 223.618 kb on + strand, within Sama_0195 at 223.618 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.672 kb on + strand, within Sama_0195 at 223.672 kb on + strand, within Sama_0195 at 223.673 kb on - strand, within Sama_0195 at 223.673 kb on - strand, within Sama_0195 at 223.673 kb on - strand, within Sama_0195 at 223.676 kb on + strand, within Sama_0195 at 223.676 kb on + strand, within Sama_0195 at 223.676 kb on + strand, within Sama_0195 at 223.676 kb on + strand, within Sama_0195 at 223.677 kb on - strand, within Sama_0195 at 223.677 kb on - strand, within Sama_0195 at 223.694 kb on + strand, within Sama_0195 at 223.694 kb on + strand, within Sama_0195 at 223.694 kb on + strand, within Sama_0195 at 223.694 kb on + strand, within Sama_0195 at 223.695 kb on - strand, within Sama_0195 at 223.695 kb on - strand, within Sama_0195 at 223.695 kb on - strand, within Sama_0195 at 223.699 kb on + strand, within Sama_0195 at 223.700 kb on - strand, within Sama_0195 at 223.710 kb on + strand, within Sama_0195 at 223.710 kb on + strand, within Sama_0195 at 223.710 kb on + strand, within Sama_0195 at 223.710 kb on + strand, within Sama_0195 at 223.727 kb on + strand, within Sama_0195 at 223.727 kb on + strand, within Sama_0195 at 223.728 kb on - strand, within Sama_0195 at 223.728 kb on - strand, within Sama_0195 at 223.777 kb on + strand at 223.778 kb on - strand at 223.820 kb on - strand at 223.831 kb on - strand at 223.842 kb on - strand at 223.851 kb on + strand at 223.851 kb on + strand at 223.852 kb on - strand at 223.853 kb on + strand at 223.853 kb on + strand at 223.853 kb on + strand at 223.853 kb on + strand at 223.854 kb on - strand at 223.854 kb on - strand at 223.854 kb on - strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.859 kb on - strand at 223.876 kb on + strand at 223.877 kb on - strand at 223.934 kb on - strand at 224.005 kb on - strand at 224.061 kb on + strand at 224.062 kb on - strand at 224.062 kb on - strand at 224.063 kb on + strand at 224.063 kb on + strand at 224.063 kb on + strand at 224.063 kb on + strand at 224.064 kb on - strand at 224.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.00625 mM remove 222,377 + +0.1 222,377 + +0.2 222,378 - +0.9 222,378 - +0.6 222,378 - -0.3 222,378 - +0.6 222,427 + +0.3 222,447 + +0.7 222,463 + +0.8 222,463 + +0.2 222,463 + -2.3 222,463 + -0.4 222,463 + +0.7 222,463 + +1.8 222,463 + -0.1 222,463 + -0.8 222,463 + +0.8 222,464 - +0.6 222,464 - +0.7 222,464 - +0.0 222,464 - +0.6 222,464 - -2.2 222,464 - +0.8 222,464 - -0.4 222,464 - +0.3 222,490 + +1.5 222,490 + -0.2 222,495 + -0.2 222,495 + +0.9 222,495 + -0.2 223,312 + +0.2 223,313 - +1.8 223,313 - +0.3 223,313 - -0.3 223,322 + -0.3 223,322 + -0.2 223,323 - +0.0 223,323 - +1.7 223,323 - -0.3 223,389 - Sama_0195 0.11 +0.7 223,389 - Sama_0195 0.11 +0.2 223,394 + Sama_0195 0.12 +0.9 223,394 + Sama_0195 0.12 -0.8 223,394 + Sama_0195 0.12 -0.2 223,394 + Sama_0195 0.12 +1.4 223,395 - Sama_0195 0.12 +0.0 223,395 - Sama_0195 0.12 -0.0 223,395 - Sama_0195 0.12 +0.2 223,416 + Sama_0195 0.17 +0.5 223,416 + Sama_0195 0.17 +0.1 223,416 + Sama_0195 0.17 +0.2 223,417 - Sama_0195 0.17 +0.2 223,417 - Sama_0195 0.17 -0.7 223,525 + Sama_0195 0.41 +0.2 223,537 - Sama_0195 0.43 +0.6 223,556 + Sama_0195 0.47 +0.2 223,556 + Sama_0195 0.47 +0.6 223,556 + Sama_0195 0.47 +0.1 223,556 + Sama_0195 0.47 -0.8 223,556 + Sama_0195 0.47 +1.2 223,557 - Sama_0195 0.48 +0.6 223,557 - Sama_0195 0.48 -0.6 223,557 - Sama_0195 0.48 +0.2 223,557 - Sama_0195 0.48 -0.4 223,557 - Sama_0195 0.48 -0.1 223,557 - Sama_0195 0.48 -0.7 223,557 - Sama_0195 0.48 +0.8 223,596 + Sama_0195 0.56 +0.4 223,596 + Sama_0195 0.56 -2.5 223,596 + Sama_0195 0.56 -1.8 223,596 + Sama_0195 0.56 -0.4 223,596 + Sama_0195 0.56 -0.1 223,596 + Sama_0195 0.56 +0.1 223,596 + Sama_0195 0.56 +0.5 223,597 - Sama_0195 0.56 -0.1 223,597 - Sama_0195 0.56 +0.5 223,597 - Sama_0195 0.56 +0.4 223,597 - Sama_0195 0.56 -1.0 223,597 - Sama_0195 0.56 +0.4 223,618 + Sama_0195 0.61 -0.4 223,618 + Sama_0195 0.61 -1.2 223,618 + Sama_0195 0.61 -0.8 223,620 + Sama_0195 0.61 -0.1 223,620 + Sama_0195 0.61 -0.1 223,620 + Sama_0195 0.61 +0.9 223,620 + Sama_0195 0.61 -0.3 223,620 + Sama_0195 0.61 -0.2 223,620 + Sama_0195 0.61 +0.4 223,620 + Sama_0195 0.61 -1.3 223,621 - Sama_0195 0.62 +0.2 223,621 - Sama_0195 0.62 +0.0 223,621 - Sama_0195 0.62 +0.5 223,621 - Sama_0195 0.62 +0.0 223,621 - Sama_0195 0.62 +1.1 223,621 - Sama_0195 0.62 +0.1 223,621 - Sama_0195 0.62 -0.8 223,621 - Sama_0195 0.62 +0.4 223,672 + Sama_0195 0.73 +0.1 223,672 + Sama_0195 0.73 -0.2 223,673 - Sama_0195 0.73 -0.2 223,673 - Sama_0195 0.73 +0.2 223,673 - Sama_0195 0.73 +0.2 223,676 + Sama_0195 0.74 +0.3 223,676 + Sama_0195 0.74 -0.1 223,676 + Sama_0195 0.74 +0.1 223,676 + Sama_0195 0.74 -0.3 223,677 - Sama_0195 0.74 -0.1 223,677 - Sama_0195 0.74 +0.2 223,694 + Sama_0195 0.78 -0.7 223,694 + Sama_0195 0.78 +0.3 223,694 + Sama_0195 0.78 +0.9 223,694 + Sama_0195 0.78 -0.2 223,695 - Sama_0195 0.78 +0.5 223,695 - Sama_0195 0.78 +1.5 223,695 - Sama_0195 0.78 -0.6 223,699 + Sama_0195 0.79 +0.1 223,700 - Sama_0195 0.79 -0.3 223,710 + Sama_0195 0.81 +0.1 223,710 + Sama_0195 0.81 +0.8 223,710 + Sama_0195 0.81 +1.7 223,710 + Sama_0195 0.81 -1.2 223,727 + Sama_0195 0.85 +1.6 223,727 + Sama_0195 0.85 +0.8 223,728 - Sama_0195 0.85 +0.9 223,728 - Sama_0195 0.85 +0.1 223,777 + +1.0 223,778 - +1.2 223,820 - +0.2 223,831 - +0.7 223,842 - -1.2 223,851 + -0.4 223,851 + -1.1 223,852 - +1.2 223,853 + +0.8 223,853 + +1.1 223,853 + +0.7 223,853 + +0.8 223,854 - +1.7 223,854 - +0.2 223,854 - -0.1 223,855 + -0.3 223,855 + -0.2 223,855 + -0.1 223,855 + +0.0 223,855 + -0.3 223,855 + +0.5 223,855 + +0.1 223,855 + +0.2 223,856 - -1.1 223,856 - -0.5 223,856 - -0.2 223,856 - +0.1 223,856 - +0.2 223,856 - +0.2 223,856 - +0.0 223,856 - -0.3 223,856 - +1.2 223,856 - +0.0 223,856 - -0.6 223,859 - -0.7 223,876 + +0.3 223,877 - -0.6 223,934 - +1.0 224,005 - -0.3 224,061 + -0.0 224,062 - -0.5 224,062 - -0.9 224,063 + +0.5 224,063 + +0.2 224,063 + -0.2 224,063 + -1.6 224,064 - +0.2 224,064 - -1.3
Or see this region's nucleotide sequence