Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05400

Experiment: marine broth pH6.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05380 and PGA1_c05390 are separated by 161 nucleotidesPGA1_c05390 and PGA1_c05400 are separated by 19 nucleotidesPGA1_c05400 and PGA1_c05410 overlap by 1 nucleotides PGA1_c05380: PGA1_c05380 - hypothetical protein, at 545,206 to 546,669 _c05380 PGA1_c05390: PGA1_c05390 - glycosyl transferase, at 546,831 to 547,583 _c05390 PGA1_c05400: PGA1_c05400 - putative glycosyl transferase, family 2, at 547,603 to 548,586 _c05400 PGA1_c05410: PGA1_c05410 - hypothetical protein, at 548,586 to 549,695 _c05410 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 546.612 kb on + strandat 546.612 kb on + strandat 546.612 kb on + strandat 546.612 kb on + strandat 546.620 kb on - strandat 546.620 kb on - strandat 546.642 kb on + strandat 546.642 kb on + strandat 546.649 kb on - strandat 546.650 kb on - strandat 546.652 kb on + strandat 546.686 kb on - strandat 546.795 kb on + strandat 546.838 kb on - strandat 546.861 kb on + strandat 546.861 kb on + strandat 546.957 kb on - strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 547.003 kb on - strand, within PGA1_c05390at 547.056 kb on - strand, within PGA1_c05390at 547.136 kb on + strand, within PGA1_c05390at 547.210 kb on + strand, within PGA1_c05390at 547.219 kb on - strand, within PGA1_c05390at 547.312 kb on + strand, within PGA1_c05390at 547.407 kb on + strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.512 kb on - strandat 547.520 kb on - strandat 547.536 kb on - strandat 547.569 kb on - strandat 547.580 kb on - strandat 547.585 kb on - strandat 547.675 kb on - strandat 547.695 kb on - strandat 547.700 kb on - strandat 547.700 kb on - strandat 547.700 kb on - strandat 547.826 kb on + strand, within PGA1_c05400at 547.826 kb on + strand, within PGA1_c05400at 547.834 kb on - strand, within PGA1_c05400at 547.834 kb on - strand, within PGA1_c05400at 547.856 kb on + strand, within PGA1_c05400at 547.882 kb on + strand, within PGA1_c05400at 547.914 kb on - strand, within PGA1_c05400at 547.925 kb on - strand, within PGA1_c05400at 548.039 kb on - strand, within PGA1_c05400at 548.077 kb on + strand, within PGA1_c05400at 548.079 kb on + strand, within PGA1_c05400at 548.079 kb on + strand, within PGA1_c05400at 548.085 kb on - strand, within PGA1_c05400at 548.085 kb on - strand, within PGA1_c05400at 548.087 kb on - strand, within PGA1_c05400at 548.087 kb on - strand, within PGA1_c05400at 548.106 kb on - strand, within PGA1_c05400at 548.119 kb on + strand, within PGA1_c05400at 548.119 kb on + strand, within PGA1_c05400at 548.234 kb on + strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.329 kb on + strand, within PGA1_c05400at 548.329 kb on + strand, within PGA1_c05400at 548.332 kb on - strand, within PGA1_c05400at 548.337 kb on - strand, within PGA1_c05400at 548.337 kb on - strand, within PGA1_c05400at 548.357 kb on + strand, within PGA1_c05400at 548.357 kb on + strand, within PGA1_c05400at 548.365 kb on - strand, within PGA1_c05400at 548.380 kb on - strand, within PGA1_c05400at 548.464 kb on + strand, within PGA1_c05400at 548.515 kb on - strandat 548.547 kb on - strandat 548.567 kb on + strandat 548.567 kb on + strandat 548.648 kb on + strandat 548.671 kb on + strandat 548.778 kb on + strand, within PGA1_c05410at 548.779 kb on + strand, within PGA1_c05410at 548.787 kb on - strand, within PGA1_c05410at 548.836 kb on - strand, within PGA1_c05410at 548.836 kb on - strand, within PGA1_c05410at 548.876 kb on + strand, within PGA1_c05410at 548.944 kb on - strand, within PGA1_c05410at 548.973 kb on - strand, within PGA1_c05410at 548.989 kb on + strand, within PGA1_c05410at 548.989 kb on + strand, within PGA1_c05410at 549.059 kb on - strand, within PGA1_c05410at 549.059 kb on - strand, within PGA1_c05410at 549.069 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.113 kb on - strand, within PGA1_c05410at 549.170 kb on + strand, within PGA1_c05410at 549.185 kb on + strand, within PGA1_c05410at 549.212 kb on + strand, within PGA1_c05410at 549.216 kb on + strand, within PGA1_c05410at 549.218 kb on + strand, within PGA1_c05410at 549.224 kb on - strand, within PGA1_c05410at 549.291 kb on - strand, within PGA1_c05410at 549.333 kb on + strand, within PGA1_c05410at 549.336 kb on - strand, within PGA1_c05410at 549.341 kb on - strand, within PGA1_c05410at 549.351 kb on - strand, within PGA1_c05410at 549.439 kb on - strand, within PGA1_c05410at 549.444 kb on + strand, within PGA1_c05410at 549.464 kb on - strand, within PGA1_c05410at 549.469 kb on - strand, within PGA1_c05410at 549.543 kb on - strand, within PGA1_c05410at 549.584 kb on - strand, within PGA1_c05410

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH6.5
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546,612 + +0.4
546,612 + -0.0
546,612 + +1.3
546,612 + +0.5
546,620 - -0.3
546,620 - +0.4
546,642 + +3.0
546,642 + -0.2
546,649 - +0.5
546,650 - -0.6
546,652 + -1.3
546,686 - -0.3
546,795 + +0.2
546,838 - -1.3
546,861 + -0.6
546,861 + -0.3
546,957 - PGA1_c05390 0.17 +0.6
546,995 + PGA1_c05390 0.22 +1.9
546,995 + PGA1_c05390 0.22 +1.0
546,995 + PGA1_c05390 0.22 +0.5
547,003 - PGA1_c05390 0.23 +0.5
547,056 - PGA1_c05390 0.30 +0.7
547,136 + PGA1_c05390 0.41 +0.2
547,210 + PGA1_c05390 0.50 +0.7
547,219 - PGA1_c05390 0.52 -0.1
547,312 + PGA1_c05390 0.64 +0.2
547,407 + PGA1_c05390 0.76 +1.0
547,415 - PGA1_c05390 0.78 +0.2
547,415 - PGA1_c05390 0.78 -1.1
547,415 - PGA1_c05390 0.78 -0.2
547,512 - -1.0
547,520 - -3.3
547,536 - -1.6
547,569 - +0.1
547,580 - -0.8
547,585 - +1.0
547,675 - +1.2
547,695 - +0.2
547,700 - +1.0
547,700 - -0.0
547,700 - -0.3
547,826 + PGA1_c05400 0.23 +0.2
547,826 + PGA1_c05400 0.23 +0.9
547,834 - PGA1_c05400 0.23 +0.0
547,834 - PGA1_c05400 0.23 -0.5
547,856 + PGA1_c05400 0.26 -0.4
547,882 + PGA1_c05400 0.28 +2.2
547,914 - PGA1_c05400 0.32 +0.3
547,925 - PGA1_c05400 0.33 +0.4
548,039 - PGA1_c05400 0.44 +0.5
548,077 + PGA1_c05400 0.48 +0.6
548,079 + PGA1_c05400 0.48 -0.0
548,079 + PGA1_c05400 0.48 +0.5
548,085 - PGA1_c05400 0.49 -2.5
548,085 - PGA1_c05400 0.49 -0.2
548,087 - PGA1_c05400 0.49 +1.9
548,087 - PGA1_c05400 0.49 +1.1
548,106 - PGA1_c05400 0.51 +1.7
548,119 + PGA1_c05400 0.52 +0.6
548,119 + PGA1_c05400 0.52 +0.6
548,234 + PGA1_c05400 0.64 +1.7
548,242 - PGA1_c05400 0.65 -0.7
548,242 - PGA1_c05400 0.65 +2.4
548,242 - PGA1_c05400 0.65 -0.1
548,242 - PGA1_c05400 0.65 +0.2
548,242 - PGA1_c05400 0.65 -0.0
548,329 + PGA1_c05400 0.74 +1.0
548,329 + PGA1_c05400 0.74 +0.4
548,332 - PGA1_c05400 0.74 +0.8
548,337 - PGA1_c05400 0.75 +0.9
548,337 - PGA1_c05400 0.75 +0.8
548,357 + PGA1_c05400 0.77 -2.6
548,357 + PGA1_c05400 0.77 +0.1
548,365 - PGA1_c05400 0.77 +0.7
548,380 - PGA1_c05400 0.79 +1.8
548,464 + PGA1_c05400 0.88 +0.9
548,515 - -0.2
548,547 - -0.2
548,567 + -1.4
548,567 + +0.2
548,648 + +0.8
548,671 + +0.7
548,778 + PGA1_c05410 0.17 -1.1
548,779 + PGA1_c05410 0.17 +0.6
548,787 - PGA1_c05410 0.18 +0.3
548,836 - PGA1_c05410 0.23 -0.3
548,836 - PGA1_c05410 0.23 -0.3
548,876 + PGA1_c05410 0.26 +1.0
548,944 - PGA1_c05410 0.32 +1.2
548,973 - PGA1_c05410 0.35 -0.8
548,989 + PGA1_c05410 0.36 -0.5
548,989 + PGA1_c05410 0.36 +0.6
549,059 - PGA1_c05410 0.43 +0.1
549,059 - PGA1_c05410 0.43 -2.2
549,069 - PGA1_c05410 0.44 -0.4
549,108 - PGA1_c05410 0.47 +0.2
549,108 - PGA1_c05410 0.47 -0.1
549,108 - PGA1_c05410 0.47 -0.3
549,113 - PGA1_c05410 0.47 -0.0
549,170 + PGA1_c05410 0.53 -1.4
549,185 + PGA1_c05410 0.54 +0.4
549,212 + PGA1_c05410 0.56 +0.9
549,216 + PGA1_c05410 0.57 +1.0
549,218 + PGA1_c05410 0.57 -0.6
549,224 - PGA1_c05410 0.57 +0.5
549,291 - PGA1_c05410 0.64 +0.4
549,333 + PGA1_c05410 0.67 -0.8
549,336 - PGA1_c05410 0.68 +0.0
549,341 - PGA1_c05410 0.68 -0.6
549,351 - PGA1_c05410 0.69 -1.8
549,439 - PGA1_c05410 0.77 -2.6
549,444 + PGA1_c05410 0.77 -1.1
549,464 - PGA1_c05410 0.79 +0.7
549,469 - PGA1_c05410 0.80 +0.1
549,543 - PGA1_c05410 0.86 +0.0
549,584 - PGA1_c05410 0.90 -0.4

Or see this region's nucleotide sequence