Experiment: marine broth pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00690 and PGA1_262p00700 are separated by 1 nucleotides PGA1_262p00700 and PGA1_262p00710 overlap by 4 nucleotides PGA1_262p00710 and PGA1_262p00720 overlap by 4 nucleotides
PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373
_262p00690
PGA1_262p00700: PGA1_262p00700 - stressosome protein rsbS-like protein, at 80,375 to 80,737
_262p00700
PGA1_262p00710: PGA1_262p00710 - serine/threonine-protein kinase RsbT-like protein, at 80,734 to 81,141
_262p00710
PGA1_262p00720: PGA1_262p00720 - serine/threonine-protein kinase RsbT-like protein, at 81,138 to 82,151
_262p00720
Position (kb) 80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 79.451 kb on - strand at 79.493 kb on - strand at 79.514 kb on + strand at 79.514 kb on + strand at 79.539 kb on + strand at 79.602 kb on - strand, within PGA1_262p00690 at 79.636 kb on - strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.641 kb on - strand, within PGA1_262p00690 at 79.646 kb on - strand, within PGA1_262p00690 at 79.688 kb on - strand, within PGA1_262p00690 at 79.705 kb on - strand, within PGA1_262p00690 at 79.751 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.783 kb on - strand, within PGA1_262p00690 at 79.822 kb on + strand, within PGA1_262p00690 at 80.023 kb on + strand, within PGA1_262p00690 at 80.116 kb on - strand, within PGA1_262p00690 at 80.239 kb on - strand, within PGA1_262p00690 at 80.334 kb on - strand at 80.350 kb on - strand at 80.600 kb on + strand, within PGA1_262p00700 at 80.600 kb on + strand, within PGA1_262p00700 at 80.674 kb on + strand, within PGA1_262p00700 at 80.957 kb on + strand, within PGA1_262p00710 at 80.959 kb on + strand, within PGA1_262p00710 at 81.138 kb on - strand at 81.155 kb on - strand at 81.238 kb on - strand at 81.376 kb on + strand, within PGA1_262p00720 at 81.437 kb on + strand, within PGA1_262p00720 at 81.497 kb on + strand, within PGA1_262p00720 at 81.586 kb on - strand, within PGA1_262p00720 at 81.639 kb on + strand, within PGA1_262p00720 at 81.657 kb on - strand, within PGA1_262p00720 at 81.732 kb on - strand, within PGA1_262p00720
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH6.5 remove 79,451 - +0.0 79,493 - +0.3 79,514 + -0.2 79,514 + -2.6 79,539 + -0.4 79,602 - PGA1_262p00690 0.12 -1.9 79,636 - PGA1_262p00690 0.16 +1.0 79,638 + PGA1_262p00690 0.16 +0.8 79,638 + PGA1_262p00690 0.16 +0.6 79,641 - PGA1_262p00690 0.16 +0.2 79,646 - PGA1_262p00690 0.17 +0.3 79,688 - PGA1_262p00690 0.22 +1.0 79,705 - PGA1_262p00690 0.24 -0.0 79,751 + PGA1_262p00690 0.29 +0.7 79,775 + PGA1_262p00690 0.32 -2.6 79,775 + PGA1_262p00690 0.32 -0.2 79,783 - PGA1_262p00690 0.33 -0.0 79,822 + PGA1_262p00690 0.37 +1.0 80,023 + PGA1_262p00690 0.60 -0.3 80,116 - PGA1_262p00690 0.71 -0.4 80,239 - PGA1_262p00690 0.85 -0.1 80,334 - +0.7 80,350 - +0.3 80,600 + PGA1_262p00700 0.62 -0.3 80,600 + PGA1_262p00700 0.62 +0.9 80,674 + PGA1_262p00700 0.82 +1.6 80,957 + PGA1_262p00710 0.55 -0.1 80,959 + PGA1_262p00710 0.55 +1.4 81,138 - -0.3 81,155 - -1.6 81,238 - +0.3 81,376 + PGA1_262p00720 0.23 -1.5 81,437 + PGA1_262p00720 0.29 -1.8 81,497 + PGA1_262p00720 0.35 +0.3 81,586 - PGA1_262p00720 0.44 -0.5 81,639 + PGA1_262p00720 0.49 +0.7 81,657 - PGA1_262p00720 0.51 -1.2 81,732 - PGA1_262p00720 0.59 -0.2
Or see this region's nucleotide sequence