Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02780

Experiment: marine broth pH6.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02770 and PGA1_c02780 overlap by 4 nucleotidesPGA1_c02780 and PGA1_c02790 are separated by 3 nucleotides PGA1_c02770: PGA1_c02770 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI, at 265,638 to 267,158 _c02770 PGA1_c02780: PGA1_c02780 - Membrane-bound metallopeptidase, at 267,155 to 268,339 _c02780 PGA1_c02790: PGA1_c02790 - putative carboxy-terminal-processing protease, at 268,343 to 269,686 _c02790 Position (kb) 267 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 267.157 kb on - strandat 267.160 kb on - strandat 267.200 kb on + strandat 267.208 kb on + strandat 267.216 kb on - strandat 267.221 kb on + strandat 267.257 kb on - strandat 267.258 kb on + strandat 267.331 kb on + strand, within PGA1_c02780at 267.331 kb on + strand, within PGA1_c02780at 267.331 kb on + strand, within PGA1_c02780at 267.339 kb on - strand, within PGA1_c02780at 267.354 kb on - strand, within PGA1_c02780at 267.413 kb on + strand, within PGA1_c02780at 267.413 kb on + strand, within PGA1_c02780at 267.421 kb on - strand, within PGA1_c02780at 267.421 kb on - strand, within PGA1_c02780at 267.421 kb on - strand, within PGA1_c02780at 267.564 kb on - strand, within PGA1_c02780at 267.564 kb on - strand, within PGA1_c02780at 267.646 kb on + strand, within PGA1_c02780at 267.689 kb on - strand, within PGA1_c02780at 267.706 kb on - strand, within PGA1_c02780at 267.706 kb on - strand, within PGA1_c02780at 267.706 kb on - strand, within PGA1_c02780at 267.708 kb on + strand, within PGA1_c02780at 267.708 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.731 kb on - strand, within PGA1_c02780at 267.731 kb on - strand, within PGA1_c02780at 267.795 kb on + strand, within PGA1_c02780at 267.795 kb on + strand, within PGA1_c02780at 267.855 kb on - strand, within PGA1_c02780at 267.929 kb on + strand, within PGA1_c02780at 267.930 kb on + strand, within PGA1_c02780at 267.934 kb on + strand, within PGA1_c02780at 267.938 kb on - strand, within PGA1_c02780at 268.019 kb on - strand, within PGA1_c02780at 268.127 kb on + strand, within PGA1_c02780at 268.135 kb on + strand, within PGA1_c02780at 268.135 kb on + strand, within PGA1_c02780at 268.156 kb on - strand, within PGA1_c02780at 268.237 kb on + strandat 268.245 kb on - strandat 268.266 kb on + strandat 268.377 kb on - strandat 268.389 kb on - strandat 268.404 kb on + strandat 268.437 kb on + strandat 268.461 kb on + strandat 268.506 kb on + strand, within PGA1_c02790at 268.532 kb on - strand, within PGA1_c02790at 268.597 kb on + strand, within PGA1_c02790at 268.634 kb on - strand, within PGA1_c02790at 268.658 kb on - strand, within PGA1_c02790at 268.769 kb on + strand, within PGA1_c02790at 268.769 kb on + strand, within PGA1_c02790at 268.781 kb on + strand, within PGA1_c02790at 268.786 kb on + strand, within PGA1_c02790at 268.789 kb on - strand, within PGA1_c02790at 268.789 kb on - strand, within PGA1_c02790at 268.820 kb on + strand, within PGA1_c02790at 268.820 kb on + strand, within PGA1_c02790at 268.831 kb on + strand, within PGA1_c02790at 268.989 kb on - strand, within PGA1_c02790at 269.021 kb on + strand, within PGA1_c02790at 269.034 kb on - strand, within PGA1_c02790at 269.078 kb on - strand, within PGA1_c02790at 269.148 kb on + strand, within PGA1_c02790at 269.156 kb on - strand, within PGA1_c02790at 269.158 kb on + strand, within PGA1_c02790at 269.218 kb on + strand, within PGA1_c02790at 269.226 kb on - strand, within PGA1_c02790

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH6.5
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267,157 - +0.5
267,160 - -0.2
267,200 + +1.3
267,208 + +0.1
267,216 - +0.7
267,221 + +1.5
267,257 - +0.5
267,258 + -0.1
267,331 + PGA1_c02780 0.15 -0.7
267,331 + PGA1_c02780 0.15 +1.6
267,331 + PGA1_c02780 0.15 +0.3
267,339 - PGA1_c02780 0.16 +1.1
267,354 - PGA1_c02780 0.17 +0.7
267,413 + PGA1_c02780 0.22 -0.8
267,413 + PGA1_c02780 0.22 +1.0
267,421 - PGA1_c02780 0.22 +0.2
267,421 - PGA1_c02780 0.22 +0.8
267,421 - PGA1_c02780 0.22 +1.3
267,564 - PGA1_c02780 0.35 -0.3
267,564 - PGA1_c02780 0.35 -1.2
267,646 + PGA1_c02780 0.41 -0.4
267,689 - PGA1_c02780 0.45 +0.2
267,706 - PGA1_c02780 0.46 -0.3
267,706 - PGA1_c02780 0.46 +2.3
267,706 - PGA1_c02780 0.46 +0.5
267,708 + PGA1_c02780 0.47 -1.6
267,708 + PGA1_c02780 0.47 -0.5
267,723 + PGA1_c02780 0.48 +0.9
267,723 + PGA1_c02780 0.48 -0.3
267,723 + PGA1_c02780 0.48 +1.0
267,723 + PGA1_c02780 0.48 -1.0
267,723 + PGA1_c02780 0.48 -0.2
267,731 - PGA1_c02780 0.49 -0.3
267,731 - PGA1_c02780 0.49 +1.8
267,795 + PGA1_c02780 0.54 -0.1
267,795 + PGA1_c02780 0.54 -0.4
267,855 - PGA1_c02780 0.59 -0.6
267,929 + PGA1_c02780 0.65 +0.6
267,930 + PGA1_c02780 0.65 +0.2
267,934 + PGA1_c02780 0.66 +0.5
267,938 - PGA1_c02780 0.66 +0.8
268,019 - PGA1_c02780 0.73 -0.4
268,127 + PGA1_c02780 0.82 -1.8
268,135 + PGA1_c02780 0.83 +0.0
268,135 + PGA1_c02780 0.83 -0.5
268,156 - PGA1_c02780 0.84 -2.0
268,237 + -0.3
268,245 - +0.7
268,266 + -1.7
268,377 - -2.7
268,389 - +0.2
268,404 + -1.4
268,437 + -3.4
268,461 + +1.3
268,506 + PGA1_c02790 0.12 -1.7
268,532 - PGA1_c02790 0.14 -2.4
268,597 + PGA1_c02790 0.19 -0.1
268,634 - PGA1_c02790 0.22 -0.2
268,658 - PGA1_c02790 0.23 -0.4
268,769 + PGA1_c02790 0.32 -2.0
268,769 + PGA1_c02790 0.32 -0.2
268,781 + PGA1_c02790 0.33 -3.0
268,786 + PGA1_c02790 0.33 -0.3
268,789 - PGA1_c02790 0.33 -2.1
268,789 - PGA1_c02790 0.33 -0.8
268,820 + PGA1_c02790 0.35 -1.5
268,820 + PGA1_c02790 0.35 -2.7
268,831 + PGA1_c02790 0.36 -3.2
268,989 - PGA1_c02790 0.48 -1.4
269,021 + PGA1_c02790 0.50 -1.0
269,034 - PGA1_c02790 0.51 -0.7
269,078 - PGA1_c02790 0.55 -2.6
269,148 + PGA1_c02790 0.60 -1.2
269,156 - PGA1_c02790 0.60 +0.8
269,158 + PGA1_c02790 0.61 -0.6
269,218 + PGA1_c02790 0.65 -1.2
269,226 - PGA1_c02790 0.66 -0.9

Or see this region's nucleotide sequence