Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23090

Experiment: marine broth pH6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH6.5
2,392,055	-				-0.5
2,392,131	-		PGA1_c23080	0.17	-0.4
2,392,177	-		PGA1_c23080	0.22	+0.3
2,392,179	+		PGA1_c23080	0.22	+0.4
2,392,187	-		PGA1_c23080	0.23	+0.3
2,392,240	+		PGA1_c23080	0.28	-0.6
2,392,245	+		PGA1_c23080	0.29	-3.4
2,392,245	+		PGA1_c23080	0.29	+1.2
2,392,248	-		PGA1_c23080	0.29	-1.0
2,392,250	+		PGA1_c23080	0.29	+1.2
2,392,254	+		PGA1_c23080	0.30	-2.1
2,392,288	-		PGA1_c23080	0.33	-1.1
2,392,288	-		PGA1_c23080	0.33	-1.5
2,392,344	+		PGA1_c23080	0.39	+0.0
2,392,362	-		PGA1_c23080	0.41	-1.3
2,392,362	-		PGA1_c23080	0.41	-0.9
2,392,450	+		PGA1_c23080	0.50	-0.1
2,392,450	+		PGA1_c23080	0.50	+0.4
2,392,458	-		PGA1_c23080	0.51	-0.8
2,392,458	-		PGA1_c23080	0.51	+0.1
2,392,458	-		PGA1_c23080	0.51	-1.5
2,392,458	-		PGA1_c23080	0.51	+0.0
2,392,474	+		PGA1_c23080	0.52	+0.0
2,392,506	+		PGA1_c23080	0.56	-1.5
2,392,524	+		PGA1_c23080	0.58	-0.6
2,392,525	-		PGA1_c23080	0.58	+0.0
2,392,527	-		PGA1_c23080	0.58	+0.0
2,392,527	-		PGA1_c23080	0.58	+0.3
2,392,527	-		PGA1_c23080	0.58	-0.8
2,392,527	-		PGA1_c23080	0.58	+0.0
2,392,529	+		PGA1_c23080	0.58	+3.0
2,392,529	+		PGA1_c23080	0.58	+0.9
2,392,532	-		PGA1_c23080	0.58	-2.1
2,392,538	-		PGA1_c23080	0.59	-0.0
2,392,572	-		PGA1_c23080	0.62	+0.6
2,392,583	+		PGA1_c23080	0.64	-0.1
2,392,616	+		PGA1_c23080	0.67	-1.1
2,392,616	+		PGA1_c23080	0.67	+0.5
2,392,616	+		PGA1_c23080	0.67	+0.2
2,392,616	+		PGA1_c23080	0.67	+0.0
2,392,616	+		PGA1_c23080	0.67	-0.5
2,392,616	+		PGA1_c23080	0.67	-1.0
2,392,616	+		PGA1_c23080	0.67	-0.4
2,392,616	+		PGA1_c23080	0.67	-0.1
2,392,624	-		PGA1_c23080	0.68	+0.7
2,392,624	-		PGA1_c23080	0.68	+0.0
2,392,624	-		PGA1_c23080	0.68	+1.9
2,392,624	-		PGA1_c23080	0.68	-0.6
2,392,624	-		PGA1_c23080	0.68	-1.3
2,392,624	-		PGA1_c23080	0.68	+1.9
2,392,624	-		PGA1_c23080	0.68	+0.0
2,392,624	-		PGA1_c23080	0.68	-1.0
2,392,624	-		PGA1_c23080	0.68	-0.5
2,392,624	-		PGA1_c23080	0.68	+1.8
2,392,624	-		PGA1_c23080	0.68	+0.2
2,392,659	+		PGA1_c23080	0.71	+1.8
2,392,659	+		PGA1_c23080	0.71	+0.8
2,392,659	+		PGA1_c23080	0.71	-0.0
2,392,659	+		PGA1_c23080	0.71	-0.1
2,392,659	+		PGA1_c23080	0.71	-0.8
2,392,667	-		PGA1_c23080	0.72	-1.6
2,392,688	+		PGA1_c23080	0.74	-1.9
2,392,730	+		PGA1_c23080	0.79	-1.3
2,392,763	+		PGA1_c23080	0.82	+0.3
2,392,763	+		PGA1_c23080	0.82	-0.2
2,392,763	+		PGA1_c23080	0.82	-0.2
2,392,766	-		PGA1_c23080	0.82	+1.2
2,392,784	+		PGA1_c23080	0.84	-0.1
2,392,794	+		PGA1_c23080	0.85	+0.1
2,392,805	-		PGA1_c23080	0.86	+0.6
2,392,882	+				-1.0
2,392,883	-				+1.4
2,392,890	-				-1.1
2,392,890	-				+0.3
2,392,912	+				-0.5
2,392,912	-				-0.4
2,392,946	+				-0.2
2,392,946	+				-0.9
2,392,946	+				-0.3
2,392,946	+				+0.2
2,392,946	+				-0.2
2,392,951	+				-1.4
2,392,951	-				-0.2
2,392,954	-				-0.7
2,392,954	-				-1.3
2,392,954	-				-0.8
2,392,954	-				-0.8
2,392,959	-				+0.8
2,392,974	-				+1.0
2,392,984	-				+2.6
2,392,984	-				-0.5
2,392,998	+				+0.9
2,393,000	+				-0.2
2,393,006	-				-0.8
2,393,006	-				+1.6
2,393,009	-				-0.7
2,393,011	+				+0.5
2,393,019	-				-0.2
2,393,019	-				+0.7
2,393,022	+				-0.7
2,393,046	+				-1.5
2,393,046	+				+0.1
2,393,054	-				+0.3
2,393,056	+				-0.5
2,393,056	+				-1.5
2,393,056	+				-0.3
2,393,064	-				-0.6
2,393,064	-				+0.8
2,393,064	-				-2.0
2,393,064	-				-0.8
2,393,064	-				+0.6
2,393,088	-				+0.2
2,393,130	-		PGA1_c23090	0.15	-1.3
2,393,199	+		PGA1_c23090	0.23	-0.6
2,393,266	-		PGA1_c23090	0.32	-0.3
2,393,326	-		PGA1_c23090	0.40	+0.1
2,393,326	-		PGA1_c23090	0.40	+0.8
2,393,331	+		PGA1_c23090	0.40	-3.0
2,393,339	-		PGA1_c23090	0.41	-1.3
2,393,343	-		PGA1_c23090	0.42	+0.5
2,393,345	+		PGA1_c23090	0.42	-1.2
2,393,346	+		PGA1_c23090	0.42	+1.2
2,393,379	+		PGA1_c23090	0.46	+0.0
2,393,385	-		PGA1_c23090	0.47	-2.1
2,393,395	+		PGA1_c23090	0.48	-1.7
2,393,400	+		PGA1_c23090	0.49	-0.1
2,393,425	+		PGA1_c23090	0.52	-1.1
2,393,438	+		PGA1_c23090	0.54	+1.0
2,393,446	-		PGA1_c23090	0.55	+0.9
2,393,447	+		PGA1_c23090	0.55	+0.1
2,393,454	+		PGA1_c23090	0.56	+0.3
2,393,454	+		PGA1_c23090	0.56	+0.2
2,393,530	-		PGA1_c23090	0.65	+0.6
2,393,530	-		PGA1_c23090	0.65	-2.1
2,393,567	-		PGA1_c23090	0.70	-0.8
2,393,567	-		PGA1_c23090	0.70	+0.7
2,393,567	-		PGA1_c23090	0.70	+0.5
2,393,567	-		PGA1_c23090	0.70	-0.2
2,393,575	-		PGA1_c23090	0.71	-0.5
2,393,624	+		PGA1_c23090	0.77	+0.7
2,393,624	+		PGA1_c23090	0.77	-0.5
2,393,624	+		PGA1_c23090	0.77	+0.7
2,393,624	+		PGA1_c23090	0.77	+0.1
2,393,632	-		PGA1_c23090	0.78	-0.8
2,393,645	+		PGA1_c23090	0.80	-1.2
2,393,645	+		PGA1_c23090	0.80	-1.4
2,393,645	+		PGA1_c23090	0.80	-0.5
2,393,653	-		PGA1_c23090	0.81	+1.0
2,393,663	-		PGA1_c23090	0.82	+0.2
2,393,678	+		PGA1_c23090	0.84	+1.0
2,393,678	+		PGA1_c23090	0.84	-1.0
2,393,769	+				-0.5
2,393,784	-				+0.6
2,393,801	-				-1.8
2,393,815	-				-0.2
2,393,815	-				-1.3
2,393,815	-				+0.4
2,393,849	+				-0.4
2,393,851	+				-1.2
2,393,870	+				-0.2
2,393,920	+				+0.5
2,393,920	+				+0.8
2,393,920	+				-1.4
2,393,920	+				+0.3
2,393,925	-				-0.1
2,393,928	-				-0.1
2,393,977	+				-0.9
2,393,977	+				-0.8
2,393,985	-				+0.4
2,393,985	-				-1.2
2,393,985	-				-0.4
2,393,985	-				-0.7
2,393,985	-				+1.1
2,393,985	-				+2.0
2,394,008	-		PGA1_c23100	0.12	+0.0
2,394,010	+		PGA1_c23100	0.12	+0.3
2,394,049	+		PGA1_c23100	0.16	+0.6
2,394,057	-		PGA1_c23100	0.17	-0.7
2,394,059	-		PGA1_c23100	0.17	+0.0
2,394,059	-		PGA1_c23100	0.17	-0.8
2,394,116	-		PGA1_c23100	0.23	+0.7
2,394,137	-		PGA1_c23100	0.26	+0.5
2,394,179	-		PGA1_c23100	0.30	-0.1
2,394,183	-		PGA1_c23100	0.30	+1.8
2,394,214	+		PGA1_c23100	0.34	+0.0
2,394,217	+		PGA1_c23100	0.34	-0.6
2,394,280	-		PGA1_c23100	0.41	-2.1
2,394,337	+		PGA1_c23100	0.46	-0.7
2,394,344	-		PGA1_c23100	0.47	+0.8
2,394,437	+		PGA1_c23100	0.57	-0.2
2,394,445	-		PGA1_c23100	0.58	-0.5
2,394,445	-		PGA1_c23100	0.58	+0.4
2,394,445	-		PGA1_c23100	0.58	-0.5
2,394,445	-		PGA1_c23100	0.58	-0.5
2,394,445	-		PGA1_c23100	0.58	-0.5
2,394,445	-		PGA1_c23100	0.58	+1.3
2,394,445	-		PGA1_c23100	0.58	+0.1
2,394,462	-		PGA1_c23100	0.60	+1.0
2,394,462	-		PGA1_c23100	0.60	-2.6
2,394,462	-		PGA1_c23100	0.60	+0.1
2,394,552	+		PGA1_c23100	0.69	+0.8
2,394,552	+		PGA1_c23100	0.69	+0.3
2,394,552	+		PGA1_c23100	0.69	+0.0
2,394,560	-		PGA1_c23100	0.70	-0.8
2,394,667	+		PGA1_c23100	0.81	-0.7
2,394,692	-		PGA1_c23100	0.84	-0.0
2,394,699	+		PGA1_c23100	0.84	-2.9
2,394,750	-		PGA1_c23100	0.90	-0.5
2,394,750	-		PGA1_c23100	0.90	+0.0
2,394,752	+		PGA1_c23100	0.90	-0.5
2,394,752	+		PGA1_c23100	0.90	+0.9
2,394,783	+				+0.7