Strain Fitness in Shewanella amazonensis SB2B around Sama_2790

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,329,573	+		Sama_2787	0.75	+0.5
3,329,622	-		Sama_2787	0.83	-0.3
3,329,662	+		Sama_2787	0.90	-0.6
3,329,663	-				-2.9
3,329,719	+				+0.3
3,329,719	+				+0.6
3,329,719	+				-0.1
3,329,719	+				-1.0
3,329,719	+				-1.0
3,329,720	-				+0.2
3,329,720	-				-1.1
3,329,720	-				-0.2
3,329,825	+		Sama_2788	0.20	-0.0
3,329,825	+		Sama_2788	0.20	-0.3
3,329,826	-		Sama_2788	0.20	+0.5
3,329,831	+		Sama_2788	0.21	-0.6
3,329,832	-		Sama_2788	0.22	-1.5
3,329,832	-		Sama_2788	0.22	-0.3
3,329,832	-		Sama_2788	0.22	+0.7
3,329,832	-		Sama_2788	0.22	-0.6
3,329,848	+		Sama_2788	0.26	-1.5
3,329,848	+		Sama_2788	0.26	-0.3
3,329,848	+		Sama_2788	0.26	-0.9
3,329,849	-		Sama_2788	0.26	-1.9
3,329,849	-		Sama_2788	0.26	+0.1
3,329,849	-		Sama_2788	0.26	-0.5
3,329,849	-		Sama_2788	0.26	-0.3
3,329,849	-		Sama_2788	0.26	+0.3
3,329,932	+		Sama_2788	0.48	-0.3
3,329,933	-		Sama_2788	0.48	+1.8
3,329,994	+		Sama_2788	0.64	+1.5
3,329,994	+		Sama_2788	0.64	+0.7
3,329,995	-		Sama_2788	0.64	-0.0
3,330,013	-		Sama_2788	0.69	-1.0
3,330,061	-		Sama_2788	0.81	+0.8
3,330,061	-		Sama_2788	0.81	+0.7
3,330,076	+		Sama_2788	0.85	+0.5
3,330,076	+		Sama_2788	0.85	-0.7
3,330,077	-		Sama_2788	0.85	-0.3
3,330,077	-		Sama_2788	0.85	-0.4
3,330,123	+				-0.0
3,330,123	+				+1.0
3,330,124	-				-0.1
3,330,124	-				+2.8
3,330,127	+				-0.1
3,330,127	+				+0.3
3,330,153	+				+1.1
3,330,177	+				+0.4
3,330,177	+				-0.2
3,330,177	+				+0.2
3,330,178	-				-0.4
3,330,193	+				-0.3
3,330,194	-				-0.5
3,330,194	-				-0.0
3,330,194	-				+1.0
3,330,233	+		Sama_2789	0.14	+0.5
3,330,326	+		Sama_2789	0.36	+0.3
3,330,343	-		Sama_2789	0.40	+0.4
3,330,346	+		Sama_2789	0.40	+0.1
3,330,346	+		Sama_2789	0.40	-0.3
3,330,509	+		Sama_2789	0.78	+1.5
3,330,510	-		Sama_2789	0.79	-0.2
3,330,551	+		Sama_2789	0.88	+0.3
3,330,551	+		Sama_2789	0.88	+0.4
3,330,551	+		Sama_2789	0.88	-0.0
3,330,584	+				+0.0
3,330,834	+		Sama_2790	0.66	+0.8
3,330,835	-		Sama_2790	0.66	+0.4
3,330,868	+		Sama_2790	0.74	+0.2
3,330,868	+		Sama_2790	0.74	+0.2
3,330,868	+		Sama_2790	0.74	+0.3
3,330,912	+		Sama_2790	0.84	+1.9
3,330,912	+		Sama_2790	0.84	+2.4
3,330,912	+		Sama_2790	0.84	+0.5
3,330,912	+		Sama_2790	0.84	-0.6
3,330,913	-		Sama_2790	0.85	-0.0
3,330,913	-		Sama_2790	0.85	+1.1
3,330,913	-		Sama_2790	0.85	+0.1
3,330,914	+		Sama_2790	0.85	+1.0
3,330,914	+		Sama_2790	0.85	+1.8
3,330,914	+		Sama_2790	0.85	+0.1
3,330,914	+		Sama_2790	0.85	+1.2
3,330,914	+		Sama_2790	0.85	+0.4
3,330,914	+		Sama_2790	0.85	-0.3
3,330,914	+		Sama_2790	0.85	+0.7
3,330,914	+		Sama_2790	0.85	+0.7
3,330,914	+		Sama_2790	0.85	+0.5
3,330,914	+		Sama_2790	0.85	+0.1
3,330,915	-		Sama_2790	0.85	+0.8
3,330,915	-		Sama_2790	0.85	-0.6
3,330,915	-		Sama_2790	0.85	+1.5
3,330,915	-		Sama_2790	0.85	-0.8
3,330,915	-		Sama_2790	0.85	-0.3
3,330,915	-		Sama_2790	0.85	-1.4
3,330,915	-		Sama_2790	0.85	+1.5
3,330,915	-		Sama_2790	0.85	-1.0
3,330,955	+				+0.1
3,331,007	-				-0.3
3,331,007	-				-0.1
3,331,007	-				-1.6
3,331,025	+				+0.5
3,331,026	-				-0.3
3,331,026	-				+0.5
3,331,026	-				+0.7
3,331,026	-				-0.1
3,331,070	+				-0.3
3,331,070	+				-0.0
3,331,070	+				+0.1
3,331,071	-				-0.2
3,331,071	-				-0.1
3,331,071	-				+0.8
3,331,071	-				+0.2
3,331,073	-				+1.0
3,331,073	-				-0.2
3,331,073	-				-0.1
3,331,090	-				-0.1
3,331,222	+		Sama_2791	0.33	+0.5
3,331,222	+		Sama_2791	0.33	-0.8
3,331,222	+		Sama_2791	0.33	+0.2
3,331,222	+		Sama_2791	0.33	-0.3
3,331,222	+		Sama_2791	0.33	-0.5
3,331,223	-		Sama_2791	0.33	-0.2
3,331,223	-		Sama_2791	0.33	+1.4
3,331,419	+		Sama_2791	0.72	-1.0
3,331,420	-		Sama_2791	0.72	-0.0
3,331,420	-		Sama_2791	0.72	-0.0
3,331,468	+		Sama_2791	0.82	-0.2
3,331,469	-		Sama_2791	0.82	-0.3
3,331,469	-		Sama_2791	0.82	+0.0
3,331,555	+				-0.3
3,331,555	+				+1.5
3,331,578	+				-2.0
3,331,578	+				+0.2
3,331,645	+				-0.4
3,331,645	+				+0.1
3,331,667	-		Sama_2792	0.12	-0.9
3,331,689	+		Sama_2792	0.16	-1.1
3,331,690	-		Sama_2792	0.16	-0.6
3,331,708	+		Sama_2792	0.20	-0.2
3,331,709	-		Sama_2792	0.20	+0.5
3,331,738	+		Sama_2792	0.25	-0.5
3,331,821	+		Sama_2792	0.41	-1.5
3,331,821	+		Sama_2792	0.41	-0.2
3,331,821	+		Sama_2792	0.41	+1.1
3,331,822	-		Sama_2792	0.41	+0.7
3,331,822	-		Sama_2792	0.41	+0.2
3,331,822	-		Sama_2792	0.41	+0.4
3,331,822	-		Sama_2792	0.41	-0.5
3,331,831	+		Sama_2792	0.43	-1.2
3,331,831	+		Sama_2792	0.43	-0.4
3,331,832	-		Sama_2792	0.43	-0.4
3,331,945	+		Sama_2792	0.64	+0.1
3,331,960	-		Sama_2792	0.67	-0.0
3,331,960	-		Sama_2792	0.67	+1.9