Strain Fitness in Shewanella amazonensis SB2B around Sama_0870

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,059,747	+		Sama_0868	0.50	-0.5
1,059,747	+		Sama_0868	0.50	+0.1
1,059,747	+		Sama_0868	0.50	+0.0
1,059,747	+		Sama_0868	0.50	+0.3
1,059,748	-		Sama_0868	0.50	+0.5
1,059,753	+		Sama_0868	0.51	+0.4
1,059,762	+		Sama_0868	0.51	-1.5
1,059,762	+		Sama_0868	0.51	-1.4
1,059,762	+		Sama_0868	0.51	-1.5
1,059,762	+		Sama_0868	0.51	-1.8
1,059,797	+		Sama_0868	0.54	+0.5
1,059,797	+		Sama_0868	0.54	+1.5
1,059,797	+		Sama_0868	0.54	+0.5
1,059,797	+		Sama_0868	0.54	+0.4
1,059,797	+		Sama_0868	0.54	-1.3
1,059,798	-		Sama_0868	0.55	+0.0
1,059,798	-		Sama_0868	0.55	+0.6
1,059,798	-		Sama_0868	0.55	+0.3
1,059,798	-		Sama_0868	0.55	+1.5
1,059,798	-		Sama_0868	0.55	-0.3
1,059,798	-		Sama_0868	0.55	+0.5
1,059,865	-		Sama_0868	0.60	-0.6
1,059,933	+		Sama_0868	0.66	-1.1
1,059,933	+		Sama_0868	0.66	+0.0
1,059,934	-		Sama_0868	0.66	-0.2
1,059,934	-		Sama_0868	0.66	-0.6
1,059,934	-		Sama_0868	0.66	-1.2
1,060,007	+		Sama_0868	0.72	-0.8
1,060,007	+		Sama_0868	0.72	-0.2
1,060,007	+		Sama_0868	0.72	-0.5
1,060,007	+		Sama_0868	0.72	+0.5
1,060,007	+		Sama_0868	0.72	-0.6
1,060,007	+		Sama_0868	0.72	+1.5
1,060,007	+		Sama_0868	0.72	+0.7
1,060,007	+		Sama_0868	0.72	+0.1
1,060,008	-		Sama_0868	0.72	-1.1
1,060,008	-		Sama_0868	0.72	+0.0
1,060,008	-		Sama_0868	0.72	-1.5
1,060,008	-		Sama_0868	0.72	+0.5
1,060,008	-		Sama_0868	0.72	+0.2
1,060,008	-		Sama_0868	0.72	+0.2
1,060,008	-		Sama_0868	0.72	+1.3
1,060,029	+		Sama_0868	0.74	+0.4
1,060,061	+		Sama_0868	0.77	+0.9
1,060,061	+		Sama_0868	0.77	+0.5
1,060,061	+		Sama_0868	0.77	-0.5
1,060,062	-		Sama_0868	0.77	-1.0
1,060,062	-		Sama_0868	0.77	+0.5
1,060,062	-		Sama_0868	0.77	-1.5
1,060,081	+		Sama_0868	0.79	+0.5
1,060,082	-		Sama_0868	0.79	+0.4
1,060,225	+				-0.1
1,060,226	-				-0.0
1,060,226	-				+0.9
1,060,311	+				+2.3
1,060,312	-				+0.2
1,060,312	-				+0.1
1,060,340	+				-0.8
1,060,340	+				-0.1
1,060,341	-				-0.2
1,060,341	-				+0.5
1,060,345	+				-1.4
1,060,345	+				-1.3
1,060,345	+				-0.2
1,060,345	+				+0.4
1,060,345	+				-0.7
1,060,345	+				+0.9
1,060,346	-				-1.0
1,060,346	-				+1.4
1,060,346	-				+1.3
1,060,346	-				-1.5
1,060,360	+				-0.1
1,060,440	+		Sama_0869	0.29	+0.5
1,060,441	-		Sama_0869	0.29	-1.7
1,060,473	+		Sama_0869	0.38	-0.3
1,060,474	-		Sama_0869	0.38	+0.2
1,060,474	-		Sama_0869	0.38	+0.4
1,060,601	+		Sama_0869	0.71	-0.7
1,060,680	+				+0.2
1,060,680	+				+0.8
1,060,680	+				+0.9
1,060,680	+				+0.2
1,060,680	+				-0.1
1,060,680	+				+1.3
1,060,680	+				-0.3
1,060,680	+				+0.5
1,060,680	+				-0.7
1,060,681	-				-1.9
1,060,681	-				+0.5
1,060,681	-				-0.1
1,060,706	+				+1.2
1,060,707	-				-0.8
1,060,710	+				+1.4
1,060,710	+				-0.9
1,060,710	+				+0.4
1,060,710	+				-0.1
1,060,721	-				-0.6
1,060,727	+				+0.1
1,060,727	+				-1.7
1,060,727	+				+0.2
1,060,728	-				+0.7
1,060,728	-				-1.0
1,060,728	-				+0.1
1,060,728	-				-2.1
1,060,742	+				-1.1
1,060,743	-				+0.7
1,060,755	+				-0.8
1,060,755	+				+0.2
1,060,776	+				-0.8
1,060,776	+				-0.1
1,060,777	-				+0.1
1,060,941	+	nhaR	Sama_0870	0.25	+0.0
1,060,941	+	nhaR	Sama_0870	0.25	-0.6
1,060,941	+	nhaR	Sama_0870	0.25	+0.9
1,060,941	+	nhaR	Sama_0870	0.25	+0.3
1,060,941	+	nhaR	Sama_0870	0.25	+0.1
1,060,941	+	nhaR	Sama_0870	0.25	-0.8
1,060,941	+	nhaR	Sama_0870	0.25	+0.3
1,060,942	-	nhaR	Sama_0870	0.25	-1.0
1,060,942	-	nhaR	Sama_0870	0.25	-0.8
1,060,942	-	nhaR	Sama_0870	0.25	+0.9
1,060,946	+	nhaR	Sama_0870	0.26	+1.5
1,060,946	+	nhaR	Sama_0870	0.26	-1.1
1,060,947	-	nhaR	Sama_0870	0.26	-0.1
1,060,947	-	nhaR	Sama_0870	0.26	+1.8
1,060,947	-	nhaR	Sama_0870	0.26	+0.4
1,060,962	+	nhaR	Sama_0870	0.28	+1.2
1,060,962	+	nhaR	Sama_0870	0.28	+0.1
1,060,962	+	nhaR	Sama_0870	0.28	-0.0
1,060,962	+	nhaR	Sama_0870	0.28	-1.8
1,060,962	+	nhaR	Sama_0870	0.28	+0.5
1,060,962	+	nhaR	Sama_0870	0.28	-1.6
1,060,962	+	nhaR	Sama_0870	0.28	-0.2
1,060,963	-	nhaR	Sama_0870	0.28	+0.7
1,060,963	-	nhaR	Sama_0870	0.28	+1.5
1,060,963	-	nhaR	Sama_0870	0.28	-1.8
1,060,963	-	nhaR	Sama_0870	0.28	+0.3
1,060,963	-	nhaR	Sama_0870	0.28	+0.3
1,060,971	-	nhaR	Sama_0870	0.28	+0.7
1,061,063	-	nhaR	Sama_0870	0.39	-0.1
1,061,071	+	nhaR	Sama_0870	0.39	+0.7
1,061,074	+	nhaR	Sama_0870	0.40	+0.1
1,061,074	+	nhaR	Sama_0870	0.40	+0.4
1,061,074	+	nhaR	Sama_0870	0.40	+0.9
1,061,074	+	nhaR	Sama_0870	0.40	-2.1
1,061,074	+	nhaR	Sama_0870	0.40	+0.5
1,061,075	-	nhaR	Sama_0870	0.40	-1.2
1,061,075	-	nhaR	Sama_0870	0.40	-0.3
1,061,090	+	nhaR	Sama_0870	0.42	+0.4
1,061,090	+	nhaR	Sama_0870	0.42	-0.2
1,061,135	-	nhaR	Sama_0870	0.47	+0.2
1,061,135	-	nhaR	Sama_0870	0.47	+0.1
1,061,180	+	nhaR	Sama_0870	0.51	-1.1
1,061,441	+	nhaR	Sama_0870	0.80	+0.2
1,061,442	-	nhaR	Sama_0870	0.80	+1.7
1,061,442	-	nhaR	Sama_0870	0.80	+1.0
1,061,453	-	nhaR	Sama_0870	0.82	+0.5
1,061,507	+	nhaR	Sama_0870	0.87	+0.4
1,061,507	+	nhaR	Sama_0870	0.87	+0.3
1,061,507	+	nhaR	Sama_0870	0.87	-0.0
1,061,507	+	nhaR	Sama_0870	0.87	-2.3
1,061,507	+	nhaR	Sama_0870	0.87	-0.4
1,061,508	-	nhaR	Sama_0870	0.88	+0.5
1,061,618	+				+0.5
1,061,618	+				-0.3
1,061,619	-				-0.8
1,061,619	-				+0.5
1,061,619	-				+1.5
1,061,634	-				-0.8
1,061,703	+				+0.4
1,061,714	+				-1.1
1,061,714	+				-0.9
1,061,714	+				-1.2
1,061,714	+				-1.4
1,061,714	+				-0.2
1,061,714	+				-1.1
1,061,714	+				-0.8
1,061,715	-				+1.2
1,061,715	-				-0.8
1,061,734	+				-0.7
1,061,735	-				-1.1
1,061,813	+		Sama_0871	0.35	-0.8
1,061,813	+		Sama_0871	0.35	-1.3
1,061,814	-		Sama_0871	0.35	-1.5
1,061,824	+		Sama_0871	0.40	-1.3
1,061,851	-		Sama_0871	0.51	-1.2
1,061,937	+		Sama_0871	0.87	-1.1
1,061,937	+		Sama_0871	0.87	+0.5
1,061,937	+		Sama_0871	0.87	-0.8
1,061,938	-		Sama_0871	0.87	-2.3
1,061,938	-		Sama_0871	0.87	-2.6
1,061,938	-		Sama_0871	0.87	+1.5
1,061,997	+		Sama_0872	0.11	+2.3
1,061,998	-		Sama_0872	0.12	+0.7
1,061,998	-		Sama_0872	0.12	-0.4
1,061,998	-		Sama_0872	0.12	+0.7
1,062,061	+		Sama_0872	0.26	+0.4
1,062,088	+		Sama_0872	0.33	+2.5
1,062,089	-		Sama_0872	0.33	-0.3
1,062,089	-		Sama_0872	0.33	+0.1
1,062,089	-		Sama_0872	0.33	-2.0
1,062,119	+		Sama_0872	0.40	-0.2
1,062,243	-		Sama_0872	0.69	-0.6
1,062,289	+		Sama_0872	0.80	+0.2
1,062,290	-		Sama_0872	0.80	-0.7
1,062,364	+				-0.4