Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0612 and Sama_0613 are separated by 67 nucleotides Sama_0613 and Sama_0614 are separated by 71 nucleotides Sama_0614 and Sama_0615 are separated by 94 nucleotides
Sama_0612: Sama_0612 - D-lactate dehydrogenase (RefSeq), at 765,389 to 766,378
_0612
Sama_0613: Sama_0613 - dienelactone hydrolase (RefSeq), at 766,446 to 767,180
_0613
Sama_0614: Sama_0614 - hypothetical protein (RefSeq), at 767,252 to 767,887
_0614
Sama_0615: Sama_0615 - putative spermidine synthase (RefSeq), at 767,982 to 768,728
_0615
Position (kb) 766
767
768 Strain fitness (log2 ratio) -2
-1
0
1
2 at 765.466 kb on + strand at 765.466 kb on + strand at 765.466 kb on + strand at 765.466 kb on + strand at 765.467 kb on - strand at 765.474 kb on - strand at 765.515 kb on + strand, within Sama_0612 at 765.515 kb on + strand, within Sama_0612 at 765.516 kb on - strand, within Sama_0612 at 765.516 kb on - strand, within Sama_0612 at 765.516 kb on - strand, within Sama_0612 at 765.543 kb on + strand, within Sama_0612 at 765.543 kb on + strand, within Sama_0612 at 765.661 kb on + strand, within Sama_0612 at 765.661 kb on + strand, within Sama_0612 at 765.661 kb on + strand, within Sama_0612 at 765.661 kb on + strand, within Sama_0612 at 765.661 kb on + strand, within Sama_0612 at 765.662 kb on - strand, within Sama_0612 at 765.662 kb on - strand, within Sama_0612 at 765.670 kb on - strand, within Sama_0612 at 765.686 kb on + strand, within Sama_0612 at 765.759 kb on - strand, within Sama_0612 at 765.759 kb on - strand, within Sama_0612 at 765.808 kb on + strand, within Sama_0612 at 765.808 kb on + strand, within Sama_0612 at 765.809 kb on - strand, within Sama_0612 at 765.809 kb on - strand, within Sama_0612 at 765.837 kb on + strand, within Sama_0612 at 765.837 kb on + strand, within Sama_0612 at 765.837 kb on + strand, within Sama_0612 at 765.838 kb on - strand, within Sama_0612 at 765.865 kb on + strand, within Sama_0612 at 765.866 kb on - strand, within Sama_0612 at 765.872 kb on - strand, within Sama_0612 at 765.872 kb on - strand, within Sama_0612 at 765.872 kb on - strand, within Sama_0612 at 765.872 kb on - strand, within Sama_0612 at 765.930 kb on + strand, within Sama_0612 at 765.930 kb on + strand, within Sama_0612 at 765.950 kb on + strand, within Sama_0612 at 765.987 kb on + strand, within Sama_0612 at 765.988 kb on - strand, within Sama_0612 at 765.988 kb on - strand, within Sama_0612 at 765.988 kb on - strand, within Sama_0612 at 765.988 kb on - strand, within Sama_0612 at 766.167 kb on - strand, within Sama_0612 at 766.227 kb on + strand, within Sama_0612 at 766.228 kb on - strand, within Sama_0612 at 766.228 kb on - strand, within Sama_0612 at 766.315 kb on + strand at 766.315 kb on + strand at 766.316 kb on - strand at 766.411 kb on + strand at 766.411 kb on + strand at 766.411 kb on + strand at 766.411 kb on + strand at 766.412 kb on - strand at 766.412 kb on - strand at 766.472 kb on + strand at 766.473 kb on - strand at 766.473 kb on - strand at 766.478 kb on + strand at 766.479 kb on - strand at 766.479 kb on - strand at 766.529 kb on + strand, within Sama_0613 at 766.529 kb on + strand, within Sama_0613 at 766.530 kb on - strand, within Sama_0613 at 766.533 kb on + strand, within Sama_0613 at 766.534 kb on - strand, within Sama_0613 at 766.653 kb on - strand, within Sama_0613 at 766.653 kb on - strand, within Sama_0613 at 766.685 kb on + strand, within Sama_0613 at 766.685 kb on + strand, within Sama_0613 at 766.686 kb on - strand, within Sama_0613 at 766.718 kb on + strand, within Sama_0613 at 766.839 kb on + strand, within Sama_0613 at 766.884 kb on + strand, within Sama_0613 at 766.884 kb on + strand, within Sama_0613 at 766.885 kb on - strand, within Sama_0613 at 766.885 kb on - strand, within Sama_0613 at 766.885 kb on - strand, within Sama_0613 at 766.912 kb on + strand, within Sama_0613 at 766.912 kb on + strand, within Sama_0613 at 766.912 kb on + strand, within Sama_0613 at 766.912 kb on + strand, within Sama_0613 at 766.913 kb on - strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.973 kb on + strand, within Sama_0613 at 766.973 kb on + strand, within Sama_0613 at 766.973 kb on + strand, within Sama_0613 at 766.973 kb on + strand, within Sama_0613 at 766.974 kb on - strand, within Sama_0613 at 766.974 kb on - strand, within Sama_0613 at 766.974 kb on - strand, within Sama_0613 at 766.974 kb on - strand, within Sama_0613 at 767.093 kb on + strand, within Sama_0613 at 767.094 kb on - strand, within Sama_0613 at 767.138 kb on - strand at 767.138 kb on - strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.156 kb on - strand at 767.182 kb on - strand at 767.182 kb on - strand at 767.227 kb on + strand at 767.228 kb on - strand at 767.305 kb on + strand at 767.305 kb on + strand at 767.305 kb on + strand at 767.360 kb on - strand, within Sama_0614 at 767.394 kb on + strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.411 kb on + strand, within Sama_0614 at 767.412 kb on - strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.451 kb on + strand, within Sama_0614 at 767.482 kb on + strand, within Sama_0614 at 767.482 kb on + strand, within Sama_0614 at 767.483 kb on - strand, within Sama_0614 at 767.525 kb on - strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.592 kb on - strand, within Sama_0614 at 767.608 kb on + strand, within Sama_0614 at 767.688 kb on + strand, within Sama_0614 at 767.728 kb on + strand, within Sama_0614 at 767.728 kb on + strand, within Sama_0614 at 767.729 kb on - strand, within Sama_0614 at 767.738 kb on + strand, within Sama_0614 at 767.738 kb on + strand, within Sama_0614 at 767.812 kb on + strand, within Sama_0614 at 767.836 kb on + strand at 767.837 kb on - strand at 767.837 kb on - strand at 767.837 kb on - strand at 767.841 kb on + strand at 767.842 kb on - strand at 767.842 kb on - strand at 767.842 kb on - strand at 767.856 kb on + strand at 767.857 kb on - strand at 767.873 kb on + strand at 767.874 kb on - strand at 767.887 kb on + strand at 767.890 kb on + strand at 767.891 kb on - strand at 767.891 kb on - strand at 767.891 kb on - strand at 767.923 kb on - strand at 767.927 kb on + strand at 767.928 kb on - strand at 767.928 kb on - strand at 767.999 kb on + strand at 768.000 kb on - strand at 768.003 kb on + strand at 768.004 kb on - strand at 768.020 kb on + strand at 768.020 kb on + strand at 768.020 kb on + strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.133 kb on - strand, within Sama_0615 at 768.133 kb on - strand, within Sama_0615
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 765,466 + -0.0 765,466 + +1.1 765,466 + -0.3 765,466 + -0.1 765,467 - -0.6 765,474 - -1.2 765,515 + Sama_0612 0.13 -0.4 765,515 + Sama_0612 0.13 -2.3 765,516 - Sama_0612 0.13 +0.1 765,516 - Sama_0612 0.13 -0.9 765,516 - Sama_0612 0.13 -1.4 765,543 + Sama_0612 0.16 -1.5 765,543 + Sama_0612 0.16 -0.1 765,661 + Sama_0612 0.27 +2.6 765,661 + Sama_0612 0.27 -2.6 765,661 + Sama_0612 0.27 +0.6 765,661 + Sama_0612 0.27 -1.8 765,661 + Sama_0612 0.27 -0.0 765,662 - Sama_0612 0.28 -1.3 765,662 - Sama_0612 0.28 -0.6 765,670 - Sama_0612 0.28 -0.2 765,686 + Sama_0612 0.30 +0.2 765,759 - Sama_0612 0.37 +0.5 765,759 - Sama_0612 0.37 +1.2 765,808 + Sama_0612 0.42 -1.1 765,808 + Sama_0612 0.42 -0.1 765,809 - Sama_0612 0.42 -1.4 765,809 - Sama_0612 0.42 +0.1 765,837 + Sama_0612 0.45 +0.1 765,837 + Sama_0612 0.45 -0.7 765,837 + Sama_0612 0.45 -0.6 765,838 - Sama_0612 0.45 +0.9 765,865 + Sama_0612 0.48 -1.1 765,866 - Sama_0612 0.48 +0.3 765,872 - Sama_0612 0.49 -0.9 765,872 - Sama_0612 0.49 -1.3 765,872 - Sama_0612 0.49 +1.3 765,872 - Sama_0612 0.49 -0.7 765,930 + Sama_0612 0.55 +1.2 765,930 + Sama_0612 0.55 -0.6 765,950 + Sama_0612 0.57 -0.2 765,987 + Sama_0612 0.60 -0.2 765,988 - Sama_0612 0.61 -0.9 765,988 - Sama_0612 0.61 +0.1 765,988 - Sama_0612 0.61 -1.9 765,988 - Sama_0612 0.61 +0.1 766,167 - Sama_0612 0.79 +1.2 766,227 + Sama_0612 0.85 +0.5 766,228 - Sama_0612 0.85 -0.8 766,228 - Sama_0612 0.85 +0.2 766,315 + -1.2 766,315 + -0.5 766,316 - +0.1 766,411 + -0.4 766,411 + +0.4 766,411 + -0.2 766,411 + +0.6 766,412 - +0.2 766,412 - -0.5 766,472 + +0.2 766,473 - +0.9 766,473 - -0.9 766,478 + -1.6 766,479 - +0.4 766,479 - +0.0 766,529 + Sama_0613 0.11 -0.1 766,529 + Sama_0613 0.11 +0.2 766,530 - Sama_0613 0.11 -0.7 766,533 + Sama_0613 0.12 -1.0 766,534 - Sama_0613 0.12 -1.7 766,653 - Sama_0613 0.28 -0.7 766,653 - Sama_0613 0.28 -0.7 766,685 + Sama_0613 0.33 -0.2 766,685 + Sama_0613 0.33 +0.1 766,686 - Sama_0613 0.33 +0.5 766,718 + Sama_0613 0.37 +0.4 766,839 + Sama_0613 0.53 -1.2 766,884 + Sama_0613 0.60 -0.7 766,884 + Sama_0613 0.60 -0.8 766,885 - Sama_0613 0.60 -0.7 766,885 - Sama_0613 0.60 -1.0 766,885 - Sama_0613 0.60 -0.9 766,912 + Sama_0613 0.63 -1.7 766,912 + Sama_0613 0.63 +0.1 766,912 + Sama_0613 0.63 +0.0 766,912 + Sama_0613 0.63 -0.7 766,913 - Sama_0613 0.64 -0.9 766,971 + Sama_0613 0.71 +0.5 766,971 + Sama_0613 0.71 -0.7 766,971 + Sama_0613 0.71 -0.1 766,971 + Sama_0613 0.71 -0.0 766,971 + Sama_0613 0.71 +0.4 766,971 + Sama_0613 0.71 +0.1 766,971 + Sama_0613 0.71 -0.8 766,971 + Sama_0613 0.71 +0.1 766,971 + Sama_0613 0.71 -1.2 766,971 + Sama_0613 0.71 -1.3 766,972 - Sama_0613 0.72 -0.9 766,972 - Sama_0613 0.72 -0.4 766,972 - Sama_0613 0.72 +0.9 766,972 - Sama_0613 0.72 -1.1 766,972 - Sama_0613 0.72 -0.4 766,972 - Sama_0613 0.72 +0.5 766,972 - Sama_0613 0.72 -0.8 766,972 - Sama_0613 0.72 +0.1 766,972 - Sama_0613 0.72 -1.1 766,972 - Sama_0613 0.72 -2.2 766,972 - Sama_0613 0.72 -1.7 766,973 + Sama_0613 0.72 -0.7 766,973 + Sama_0613 0.72 -0.4 766,973 + Sama_0613 0.72 +0.8 766,973 + Sama_0613 0.72 +0.1 766,974 - Sama_0613 0.72 -0.4 766,974 - Sama_0613 0.72 -0.4 766,974 - Sama_0613 0.72 -0.2 766,974 - Sama_0613 0.72 -0.2 767,093 + Sama_0613 0.88 -0.5 767,094 - Sama_0613 0.88 -0.9 767,138 - -1.1 767,138 - -0.5 767,142 + -0.2 767,142 + -0.5 767,142 + -0.5 767,142 + -0.9 767,143 - -0.4 767,143 - -0.9 767,143 - -0.6 767,143 - -0.1 767,156 - +0.3 767,182 - +0.6 767,182 - -0.0 767,227 + -0.4 767,228 - +0.4 767,305 + +0.9 767,305 + +0.9 767,305 + +1.1 767,360 - Sama_0614 0.17 -0.0 767,394 + Sama_0614 0.22 -0.1 767,395 - Sama_0614 0.22 -0.5 767,395 - Sama_0614 0.22 +1.0 767,395 - Sama_0614 0.22 -1.4 767,395 - Sama_0614 0.22 -0.7 767,395 - Sama_0614 0.22 -0.8 767,411 + Sama_0614 0.25 -0.3 767,412 - Sama_0614 0.25 -0.6 767,416 + Sama_0614 0.26 +0.6 767,416 + Sama_0614 0.26 -0.2 767,416 + Sama_0614 0.26 +0.2 767,416 + Sama_0614 0.26 -0.1 767,416 + Sama_0614 0.26 +0.4 767,451 + Sama_0614 0.31 -0.4 767,482 + Sama_0614 0.36 -1.0 767,482 + Sama_0614 0.36 -0.1 767,483 - Sama_0614 0.36 -1.4 767,525 - Sama_0614 0.43 -0.2 767,591 + Sama_0614 0.53 +1.1 767,591 + Sama_0614 0.53 +0.3 767,591 + Sama_0614 0.53 +0.3 767,591 + Sama_0614 0.53 -0.9 767,591 + Sama_0614 0.53 +0.3 767,592 - Sama_0614 0.53 -0.4 767,608 + Sama_0614 0.56 +1.6 767,688 + Sama_0614 0.69 +0.1 767,728 + Sama_0614 0.75 +0.3 767,728 + Sama_0614 0.75 -0.0 767,729 - Sama_0614 0.75 +0.4 767,738 + Sama_0614 0.76 +0.2 767,738 + Sama_0614 0.76 +0.4 767,812 + Sama_0614 0.88 -1.0 767,836 + -0.5 767,837 - +0.5 767,837 - +0.3 767,837 - -0.4 767,841 + -0.1 767,842 - +1.1 767,842 - +0.4 767,842 - -0.6 767,856 + -0.9 767,857 - -1.8 767,873 + -0.1 767,874 - -1.2 767,887 + +0.8 767,890 + -1.2 767,891 - +1.0 767,891 - +0.8 767,891 - -0.1 767,923 - +0.4 767,927 + -0.1 767,928 - +0.4 767,928 - +0.5 767,999 + -0.2 768,000 - +0.5 768,003 + +0.9 768,004 - +0.1 768,020 + +0.2 768,020 + -1.7 768,020 + +0.5 768,021 - +1.5 768,021 - +0.8 768,021 - +0.3 768,021 - -0.7 768,132 + Sama_0615 0.20 -0.8 768,132 + Sama_0615 0.20 +0.5 768,132 + Sama_0615 0.20 -0.1 768,132 + Sama_0615 0.20 -1.8 768,133 - Sama_0615 0.20 -0.6 768,133 - Sama_0615 0.20 -0.2
Or see this region's nucleotide sequence