Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09700

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09690 and PGA1_c09700 are separated by 214 nucleotidesPGA1_c09700 and PGA1_c09710 are separated by 571 nucleotides PGA1_c09690: PGA1_c09690 - cell division protein FtsZ, at 993,830 to 995,623 _c09690 PGA1_c09700: PGA1_c09700 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC, at 995,838 to 996,773 _c09700 PGA1_c09710: PGA1_c09710 - putative outer membrane assembly lipoprotein, at 997,345 to 998,193 _c09710 Position (kb) 995 996 997Strain fitness (log2 ratio) -2 -1 0 1at 995.690 kb on + strandat 995.698 kb on - strandat 995.720 kb on + strandat 996.721 kb on + strandat 996.734 kb on - strandat 996.909 kb on + strandat 996.917 kb on - strandat 996.962 kb on - strandat 996.964 kb on + strandat 997.106 kb on + strandat 997.134 kb on - strandat 997.157 kb on - strandat 997.157 kb on - strandat 997.171 kb on + strandat 997.180 kb on - strandat 997.190 kb on + strandat 997.190 kb on + strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.208 kb on + strandat 997.208 kb on + strandat 997.208 kb on + strandat 997.208 kb on - strandat 997.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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995,690 + -0.7
995,698 - -1.7
995,720 + -2.0
996,721 + -0.0
996,734 - -0.5
996,909 + -0.9
996,917 - -0.7
996,962 - -0.6
996,964 + -1.0
997,106 + +1.2
997,134 - -0.5
997,157 - -1.8
997,157 - -0.8
997,171 + -0.7
997,180 - +0.2
997,190 + +0.1
997,190 + +0.8
997,198 - +1.3
997,198 - +0.4
997,198 - +0.2
997,198 - -2.1
997,198 - +1.3
997,198 - +1.3
997,198 - -1.0
997,198 - +1.3
997,198 - -0.6
997,198 - -2.3
997,198 - -0.4
997,208 + -0.1
997,208 + +0.2
997,208 + -0.6
997,208 - +0.7
997,216 - +0.3

Or see this region's nucleotide sequence