Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00460

Experiment: L-Proline (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Proline (C)
49,833	-		PGA1_c00440	0.70	+0.4
49,844	+		PGA1_c00440	0.71	-0.0
49,852	-		PGA1_c00440	0.72	-1.5
49,862	+		PGA1_c00440	0.72	-3.0
49,878	-		PGA1_c00440	0.73	-3.9
49,878	-		PGA1_c00440	0.73	-0.9
49,878	-		PGA1_c00440	0.73	-0.8
49,906	+		PGA1_c00440	0.75	+0.5
49,909	-		PGA1_c00440	0.76	-0.1
49,914	-		PGA1_c00440	0.76	-1.0
49,914	-		PGA1_c00440	0.76	-1.7
49,916	+		PGA1_c00440	0.76	+0.9
49,919	-		PGA1_c00440	0.76	+0.4
49,921	+		PGA1_c00440	0.77	-0.3
49,924	-		PGA1_c00440	0.77	-0.4
49,968	-		PGA1_c00440	0.80	+0.1
49,968	-		PGA1_c00440	0.80	+0.6
49,979	+		PGA1_c00440	0.81	+0.7
50,000	-		PGA1_c00440	0.82	-0.2
50,035	+		PGA1_c00440	0.85	+1.3
50,044	-		PGA1_c00440	0.86	+0.7
50,044	-		PGA1_c00440	0.86	-1.2
50,045	+		PGA1_c00440	0.86	-0.7
50,045	+		PGA1_c00440	0.86	-0.5
50,045	+		PGA1_c00440	0.86	-0.1
50,046	+		PGA1_c00440	0.86	-0.6
50,053	-		PGA1_c00440	0.86	+0.4
50,058	+		PGA1_c00440	0.87	-2.8
50,058	+		PGA1_c00440	0.87	-0.5
50,060	+		PGA1_c00440	0.87	-0.4
50,060	+		PGA1_c00440	0.87	-0.2
50,066	-		PGA1_c00440	0.87	-1.8
50,066	-		PGA1_c00440	0.87	-0.2
50,105	+				+0.2
50,113	-				+0.2
50,113	-				-0.3
50,119	+				-0.2
50,120	-				+0.7
50,124	-				-0.5
50,130	+				+0.3
50,131	-				+0.9
50,132	-				+0.5
50,168	+				-0.5
50,178	+				-1.3
50,186	-				+0.7
50,196	-				-2.8
50,202	+				+0.6
50,219	+				+0.8
50,219	+				-0.4
50,227	-				-1.6
50,248	+				+0.1
50,268	-				+0.7
50,298	+				-0.5
50,303	+				-1.8
50,303	+				+0.3
50,303	+				-0.6
50,303	+				+0.6
50,303	+				+0.1
50,303	+				-0.0
50,303	+				-1.5
50,303	+				+0.8
50,303	+				+1.1
50,303	+				-0.1
50,303	+				-1.5
50,303	+				-2.5
50,303	+				-1.0
50,311	-				+0.7
50,311	-				-0.1
50,311	-				-0.5
50,311	-				-1.9
50,311	-				-0.4
50,311	-				+0.2
50,311	-				+0.3
50,311	-				+1.4
50,311	-				+0.0
50,311	-				-3.7
50,311	-				-0.3
50,311	-				+1.7
50,311	-				+0.4
50,311	-				-1.3
50,311	-				+0.4
50,363	+		PGA1_c00450	0.11	+1.6
50,363	+		PGA1_c00450	0.11	+0.4
50,371	+		PGA1_c00450	0.13	+1.8
50,384	-		PGA1_c00450	0.16	-0.6
50,467	-		PGA1_c00450	0.35	-0.1
50,482	-		PGA1_c00450	0.38	-0.3
50,557	+		PGA1_c00450	0.55	-0.4
50,562	+		PGA1_c00450	0.56	+0.1
50,603	+		PGA1_c00450	0.66	+0.0
50,629	-		PGA1_c00450	0.72	+0.8
50,677	-		PGA1_c00450	0.83	-0.8
50,704	+		PGA1_c00450	0.89	-0.8
50,709	+		PGA1_c00450	0.90	+0.2
50,722	-				-1.3
50,734	-				+0.3
50,776	+				+0.2
50,784	-				-0.2
50,794	+				+1.5
50,802	-				-1.2
50,857	+				+0.5
50,857	+				+0.4
50,859	+				-1.1
50,865	-				-0.3
50,867	-				-0.7
50,867	-				+0.6
50,867	-				-1.5
50,875	+				-2.8
50,881	+				-1.7
50,881	+				-0.3
50,883	-				+0.0
50,889	-				-0.6
50,916	-				-0.0
50,934	+		PGA1_c00460	0.10	-2.3
51,016	-		PGA1_c00460	0.17	-1.2
51,049	-		PGA1_c00460	0.20	+0.4
51,051	-		PGA1_c00460	0.20	-0.4
51,084	-		PGA1_c00460	0.22	-0.6
51,118	-		PGA1_c00460	0.25	-0.5
51,118	-		PGA1_c00460	0.25	-0.1
51,135	+		PGA1_c00460	0.27	-0.2
51,163	+		PGA1_c00460	0.29	-0.3
51,173	+		PGA1_c00460	0.30	-0.1
51,173	+		PGA1_c00460	0.30	-1.2
51,198	-		PGA1_c00460	0.32	-0.5
51,233	+		PGA1_c00460	0.35	-1.0
51,239	-		PGA1_c00460	0.35	+0.6
51,239	-		PGA1_c00460	0.35	-1.4
51,256	+		PGA1_c00460	0.37	-0.3
51,268	+		PGA1_c00460	0.38	+0.2
51,295	+		PGA1_c00460	0.40	+0.4
51,295	-		PGA1_c00460	0.40	+1.0
51,312	-		PGA1_c00460	0.41	+0.1
51,387	+		PGA1_c00460	0.47	-0.4
51,398	+		PGA1_c00460	0.48	-1.8
51,398	+		PGA1_c00460	0.48	+0.5
51,398	+		PGA1_c00460	0.48	-0.5
51,420	+		PGA1_c00460	0.50	+0.4
51,487	+		PGA1_c00460	0.56	-2.8
51,500	-		PGA1_c00460	0.57	-0.8
51,502	+		PGA1_c00460	0.57	-1.5
51,510	-		PGA1_c00460	0.58	-0.4
51,532	+		PGA1_c00460	0.59	+0.6
51,590	+		PGA1_c00460	0.64	-1.9
51,640	+		PGA1_c00460	0.68	-3.8
51,663	-		PGA1_c00460	0.70	-0.2
51,663	-		PGA1_c00460	0.70	-0.3
51,673	-		PGA1_c00460	0.71	-0.1
51,702	-		PGA1_c00460	0.73	-0.5
51,726	+		PGA1_c00460	0.75	-0.0
51,733	+		PGA1_c00460	0.76	+0.1
51,734	-		PGA1_c00460	0.76	+0.1
51,738	+		PGA1_c00460	0.76	-0.4
51,738	+		PGA1_c00460	0.76	+0.9
51,738	+		PGA1_c00460	0.76	-1.5
51,738	+		PGA1_c00460	0.76	+0.1
51,738	+		PGA1_c00460	0.76	-1.2
51,741	-		PGA1_c00460	0.77	-1.5
51,746	-		PGA1_c00460	0.77	+0.0
51,754	+		PGA1_c00460	0.78	-3.4
51,768	+		PGA1_c00460	0.79	-2.4
51,774	-		PGA1_c00460	0.79	-0.1
51,774	-		PGA1_c00460	0.79	+0.8
51,891	-		PGA1_c00460	0.89	+0.4
51,906	-				+0.0
51,906	-				-1.5
51,930	+				-0.0
51,943	+				-0.7
51,943	+				-2.3
51,943	+				+1.4
51,943	+				+0.6
51,951	-				-0.7
51,951	-				-3.1
51,951	-				+0.4
51,961	-				-3.3
51,961	-				-0.2
51,982	+				-1.5
51,990	-				-0.5
52,004	-				+0.4
52,019	+				+0.9
52,109	-				-0.1
52,111	+				-1.2
52,117	+				+0.6
52,117	+				+1.0
52,117	+				-1.0
52,117	+				-2.2
52,118	+				+1.3
52,118	+				+0.9
52,118	+				-0.7
52,118	+				-1.6
52,119	-				-2.7
52,126	-				-1.9
52,126	-				+0.5
52,126	-				+0.1
52,153	+				-1.8
52,154	+				-1.1
52,158	+				-1.9
52,158	+				+0.4
52,158	+				-0.7
52,161	-				+0.0
52,167	-				+0.0
52,169	+				-3.4
52,172	-				+1.7
52,172	-				-0.2
52,183	+				+0.4
52,183	+				+0.7
52,199	+				+1.2
52,207	-				-0.9
52,209	+				-0.0
52,209	+				-0.4
52,217	-				+1.4
52,217	-				-0.0
52,273	-		PGA1_c00470	0.25	+0.1
52,321	+		PGA1_c00470	0.40	-0.5
52,323	-		PGA1_c00470	0.41	+0.3
52,329	-		PGA1_c00470	0.43	+0.6
52,396	-		PGA1_c00470	0.64	-2.0
52,421	+		PGA1_c00470	0.72	-0.9
52,421	+		PGA1_c00470	0.72	+0.2
52,421	+		PGA1_c00470	0.72	-0.8
52,421	+		PGA1_c00470	0.72	-0.7
52,426	+		PGA1_c00470	0.74	-0.7
52,429	-		PGA1_c00470	0.75	-0.9
52,429	-		PGA1_c00470	0.75	-0.9
52,429	-		PGA1_c00470	0.75	-1.1
52,464	-		PGA1_c00470	0.86	-1.8
52,477	-				+0.4
52,490	+				-0.3
52,500	+				+0.2
52,541	+				+1.2
52,549	-				+1.0
52,554	-				+1.0
52,554	-				-2.0
52,632	-				+1.1
52,634	+				-1.6
52,634	+				+0.7
52,642	+				-0.6
52,642	-				+0.4
52,829	-		PGA1_c00480	0.18	+0.2
52,832	-		PGA1_c00480	0.18	-0.3
52,847	-		PGA1_c00480	0.19	-2.1
52,850	+		PGA1_c00480	0.19	-0.7
52,858	-		PGA1_c00480	0.19	-0.9
52,869	+		PGA1_c00480	0.20	-3.6
52,877	-		PGA1_c00480	0.21	-1.0
52,882	-		PGA1_c00480	0.21	+0.4
52,896	+		PGA1_c00480	0.22	-0.2
52,953	+		PGA1_c00480	0.25	+0.8
52,975	+		PGA1_c00480	0.27	-0.1
52,980	+		PGA1_c00480	0.27	-0.8
52,980	+		PGA1_c00480	0.27	-0.4
52,980	+		PGA1_c00480	0.27	+1.0
52,983	-		PGA1_c00480	0.27	+0.5
52,983	-		PGA1_c00480	0.27	-1.7
52,983	-		PGA1_c00480	0.27	+0.1
52,985	+		PGA1_c00480	0.27	+0.1