Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35500

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35490 and PGA1_c35500 are separated by 41 nucleotidesPGA1_c35500 and PGA1_c35510 are separated by 29 nucleotides PGA1_c35490: PGA1_c35490 - putative O-sialoglycoprotein endopeptidase, at 3,719,668 to 3,720,765 _c35490 PGA1_c35500: PGA1_c35500 - uoporphyrinogen-III synthase HemD-like protein, at 3,720,807 to 3,721,574 _c35500 PGA1_c35510: PGA1_c35510 - hypothetical protein, at 3,721,604 to 3,722,986 _c35510 Position (kb) 3720 3721 3722Strain fitness (log2 ratio) -3 -2 -1 0 1at 3720.767 kb on - strandat 3720.803 kb on + strandat 3720.804 kb on + strandat 3720.804 kb on + strandat 3720.809 kb on - strandat 3720.823 kb on + strandat 3720.825 kb on + strandat 3720.831 kb on - strandat 3720.840 kb on - strandat 3721.535 kb on - strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.555 kb on - strandat 3721.555 kb on - strandat 3721.593 kb on - strandat 3721.618 kb on - strandat 3721.865 kb on + strand, within PGA1_c35510at 3721.969 kb on + strand, within PGA1_c35510at 3722.356 kb on + strand, within PGA1_c35510

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,720,767 - -3.1
3,720,803 + -0.7
3,720,804 + +1.4
3,720,804 + +0.7
3,720,809 - +1.0
3,720,823 + -0.3
3,720,825 + -1.4
3,720,831 - -1.0
3,720,840 - +0.4
3,721,535 - +1.1
3,721,547 + +0.2
3,721,547 + -0.2
3,721,547 + -2.5
3,721,547 + +0.0
3,721,547 + -1.2
3,721,547 + +0.8
3,721,547 + -0.0
3,721,547 + +0.2
3,721,547 + -2.0
3,721,547 + -1.9
3,721,547 + -0.8
3,721,547 + -0.3
3,721,547 + -0.7
3,721,547 + +1.7
3,721,547 + +1.3
3,721,547 + -0.4
3,721,547 + +0.5
3,721,547 + -0.3
3,721,555 - -0.5
3,721,555 - -0.3
3,721,593 - -1.8
3,721,618 - -1.8
3,721,865 + PGA1_c35510 0.19 -1.2
3,721,969 + PGA1_c35510 0.26 -2.6
3,722,356 + PGA1_c35510 0.54 -0.7

Or see this region's nucleotide sequence