Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33040

Experiment: L-Proline (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Proline (C)
3,461,608	+				+0.7
3,461,608	+				-0.9
3,461,610	-				+0.6
3,461,611	-				+1.4
3,461,616	-				-0.7
3,461,642	+				-2.4
3,461,744	+		PGA1_c33020	0.23	-1.1
3,461,808	-		PGA1_c33020	0.33	+0.7
3,461,829	+		PGA1_c33020	0.36	-1.2
3,461,841	+		PGA1_c33020	0.38	+0.7
3,461,868	+		PGA1_c33020	0.42	+0.1
3,461,876	-		PGA1_c33020	0.44	+2.5
3,461,876	-		PGA1_c33020	0.44	-0.4
3,461,893	+		PGA1_c33020	0.46	+0.2
3,461,893	+		PGA1_c33020	0.46	-0.0
3,461,923	+		PGA1_c33020	0.51	+0.0
3,461,931	-		PGA1_c33020	0.52	+1.1
3,462,062	-		PGA1_c33020	0.72	-1.0
3,462,073	+		PGA1_c33020	0.74	+0.8
3,462,081	-		PGA1_c33020	0.75	+0.5
3,462,106	+		PGA1_c33020	0.79	+0.7
3,462,106	+		PGA1_c33020	0.79	-0.1
3,462,106	+		PGA1_c33020	0.79	-0.4
3,462,106	+		PGA1_c33020	0.79	-0.2
3,462,106	+		PGA1_c33020	0.79	+0.0
3,462,114	-		PGA1_c33020	0.80	-0.9
3,462,118	+		PGA1_c33020	0.81	-0.1
3,462,153	+		PGA1_c33020	0.86	-0.7
3,462,238	+				+0.3
3,462,238	+				+0.5
3,462,247	-				-0.7
3,462,249	+				-1.2
3,462,249	+				-1.0
3,462,249	+				-0.7
3,462,252	-				+1.5
3,462,252	-				-0.6
3,462,252	-				+1.8
3,462,252	-				-0.8
3,462,257	-				+1.2
3,462,257	-				+0.1
3,462,257	-				+0.7
3,462,257	-				+0.3
3,462,257	-				-0.9
3,462,292	-				+1.2
3,462,298	+				-2.1
3,462,305	+				-0.1
3,462,305	+				-0.7
3,462,305	+				-0.7
3,462,305	+				-0.1
3,462,305	+				-0.4
3,462,305	+				+0.2
3,462,305	+				+0.7
3,462,305	+				+0.2
3,462,306	-				-0.2
3,462,313	-				-0.1
3,462,313	-				-1.6
3,462,313	-				-0.6
3,462,313	-				+0.7
3,462,314	-				+1.0
3,462,322	+				+0.2
3,462,356	+		PGA1_c33030	0.30	-0.3
3,462,356	+		PGA1_c33030	0.30	-0.7
3,462,357	+		PGA1_c33030	0.30	+0.3
3,462,357	+		PGA1_c33030	0.30	+0.7
3,462,364	-		PGA1_c33030	0.35	+2.9
3,462,364	-		PGA1_c33030	0.35	+0.0
3,462,364	-		PGA1_c33030	0.35	+1.5
3,462,364	-		PGA1_c33030	0.35	-1.5
3,462,364	-		PGA1_c33030	0.35	+1.0
3,462,374	-		PGA1_c33030	0.41	-1.1
3,462,409	+		PGA1_c33030	0.62	+0.6
3,462,410	+		PGA1_c33030	0.62	-1.9
3,462,410	+		PGA1_c33030	0.62	+0.0
3,462,418	-		PGA1_c33030	0.67	-2.5
3,462,418	-		PGA1_c33030	0.67	+0.2
3,462,418	-		PGA1_c33030	0.67	-0.3
3,462,418	-		PGA1_c33030	0.67	-0.2
3,462,418	-		PGA1_c33030	0.67	+0.8
3,462,428	-		PGA1_c33030	0.73	-1.5
3,462,428	-		PGA1_c33030	0.73	-0.1
3,462,475	+				+0.3
3,462,483	-				+0.4
3,462,483	-				-1.7
3,462,524	+				+0.6
3,462,524	+				-2.2
3,462,532	-				+0.5
3,462,534	+				+0.6
3,462,542	-				-0.9
3,462,618	-				-3.3
3,462,646	+				+0.2
3,462,721	-		PGA1_c33040	0.11	+1.3
3,462,789	+		PGA1_c33040	0.16	-0.0
3,462,797	-		PGA1_c33040	0.16	-0.5
3,462,810	+		PGA1_c33040	0.17	+0.0
3,462,821	+		PGA1_c33040	0.18	-0.5
3,462,829	-		PGA1_c33040	0.18	+0.5
3,462,829	-		PGA1_c33040	0.18	-2.9
3,462,894	-		PGA1_c33040	0.23	-1.1
3,462,894	-		PGA1_c33040	0.23	-1.1
3,462,901	+		PGA1_c33040	0.23	-2.3
3,462,947	-		PGA1_c33040	0.27	-0.8
3,462,963	-		PGA1_c33040	0.28	-0.6
3,462,989	-		PGA1_c33040	0.30	+0.4
3,463,009	-		PGA1_c33040	0.31	+0.6
3,463,036	+		PGA1_c33040	0.33	-1.6
3,463,044	-		PGA1_c33040	0.33	-0.6
3,463,093	+		PGA1_c33040	0.37	-0.7
3,463,250	-		PGA1_c33040	0.48	+0.2
3,463,384	-		PGA1_c33040	0.57	-2.6
3,463,388	+		PGA1_c33040	0.57	-0.5
3,463,388	+		PGA1_c33040	0.57	+0.1
3,463,396	-		PGA1_c33040	0.58	-0.4
3,463,398	+		PGA1_c33040	0.58	+1.4
3,463,433	+		PGA1_c33040	0.60	-0.3
3,463,495	-		PGA1_c33040	0.65	+1.1
3,463,674	+		PGA1_c33040	0.77	-0.5
3,463,739	-		PGA1_c33040	0.82	-0.5
3,463,782	+		PGA1_c33040	0.85	+0.4
3,463,788	+		PGA1_c33040	0.85	-0.8
3,463,796	-		PGA1_c33040	0.86	-0.2
3,463,970	+				+0.3
3,464,018	+				-1.2
3,464,026	-				+0.0
3,464,066	-				+1.4
3,464,084	-				-2.0
3,464,084	-				+0.6
3,464,084	-				-1.7
3,464,084	-				+0.4
3,464,084	-				-1.1
3,464,102	+				+0.6
3,464,138	-		PGA1_c33050	0.12	-1.8
3,464,244	+		PGA1_c33050	0.35	-0.5
3,464,253	-		PGA1_c33050	0.36	+0.9
3,464,253	-		PGA1_c33050	0.36	+0.0
3,464,292	+		PGA1_c33050	0.45	+1.2
3,464,292	+		PGA1_c33050	0.45	+0.5
3,464,300	+		PGA1_c33050	0.46	+1.5
3,464,300	+		PGA1_c33050	0.46	-0.9
3,464,300	-		PGA1_c33050	0.46	+0.0
3,464,300	-		PGA1_c33050	0.46	+0.3
3,464,300	-		PGA1_c33050	0.46	+0.4
3,464,300	-		PGA1_c33050	0.46	+0.1
3,464,300	-		PGA1_c33050	0.46	-0.2
3,464,300	-		PGA1_c33050	0.46	-1.5
3,464,300	-		PGA1_c33050	0.46	-0.0
3,464,313	-		PGA1_c33050	0.49	+1.0
3,464,385	+		PGA1_c33050	0.64	-0.1
3,464,385	+		PGA1_c33050	0.64	-0.2
3,464,386	-		PGA1_c33050	0.65	+0.0
3,464,456	+		PGA1_c33050	0.79	+0.5
3,464,462	-		PGA1_c33050	0.81	-0.7
3,464,466	+		PGA1_c33050	0.81	+2.8
3,464,501	-		PGA1_c33050	0.89	+0.5
3,464,534	+				-1.9
3,464,608	+				-0.1
3,464,656	+		PGA1_c33055	0.21	+0.4
3,464,668	+		PGA1_c33055	0.25	+1.2
3,464,702	+		PGA1_c33055	0.39	-1.2
3,464,703	+		PGA1_c33055	0.39	-1.1
3,464,703	+		PGA1_c33055	0.39	-1.1
3,464,709	+		PGA1_c33055	0.42	-0.9
3,464,710	-		PGA1_c33055	0.42	-0.8
3,464,741	-		PGA1_c33055	0.54	-1.7
3,464,777	+		PGA1_c33055	0.69	-1.9
3,464,782	+		PGA1_c33055	0.71	+0.2
3,464,806	+		PGA1_c33055	0.80	-0.1
3,464,814	-		PGA1_c33055	0.83	+0.8
3,464,837	-				-0.9
3,464,842	+				+1.7
3,464,842	+				-3.4
3,464,863	-				-1.1
3,464,865	+				-0.6
3,464,896	+				-0.4
3,464,896	+				+0.6
3,464,896	+				-1.4
3,464,904	-				-0.6
3,464,904	-				+1.0
3,464,914	-				+0.4
3,464,923	-				-1.6
3,464,929	-				+0.9
3,464,953	+				-0.3
3,464,962	+				-0.4
3,464,963	-				-1.5
3,464,970	-		PGA1_c33060	0.11	+1.4