Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03230 and PGA1_c03240 are separated by 62 nucleotides PGA1_c03240 and PGA1_c03250 overlap by 4 nucleotides PGA1_c03250 and PGA1_c03260 overlap by 4 nucleotides
PGA1_c03230: PGA1_c03230 - putative formate dehydrogenase, subunit FdhD, at 309,491 to 310,393
_c03230
PGA1_c03240: PGA1_c03240 - probable molybdopterin-guanine dinucleotide biosynthesis protein A, at 310,456 to 311,097
_c03240
PGA1_c03250: PGA1_c03250 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 311,094 to 311,585
_c03250
PGA1_c03260: PGA1_c03260 - hypothetical protein, at 311,582 to 312,394
_c03260
Position (kb)
310
311
312 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 309.459 kb on - strand at 309.460 kb on + strand at 309.460 kb on + strand at 309.468 kb on - strand at 309.468 kb on - strand at 309.468 kb on - strand at 309.468 kb on - strand at 309.515 kb on - strand at 309.520 kb on - strand at 309.739 kb on + strand, within PGA1_c03230 at 309.749 kb on + strand, within PGA1_c03230 at 309.782 kb on + strand, within PGA1_c03230 at 309.827 kb on - strand, within PGA1_c03230 at 309.874 kb on - strand, within PGA1_c03230 at 309.927 kb on + strand, within PGA1_c03230 at 309.927 kb on + strand, within PGA1_c03230 at 309.929 kb on + strand, within PGA1_c03230 at 309.929 kb on + strand, within PGA1_c03230 at 309.937 kb on - strand, within PGA1_c03230 at 309.937 kb on - strand, within PGA1_c03230 at 309.937 kb on - strand, within PGA1_c03230 at 309.986 kb on - strand, within PGA1_c03230 at 309.990 kb on + strand, within PGA1_c03230 at 309.990 kb on + strand, within PGA1_c03230 at 309.998 kb on - strand, within PGA1_c03230 at 309.998 kb on - strand, within PGA1_c03230 at 310.026 kb on + strand, within PGA1_c03230 at 310.045 kb on + strand, within PGA1_c03230 at 310.069 kb on + strand, within PGA1_c03230 at 310.153 kb on + strand, within PGA1_c03230 at 310.158 kb on + strand, within PGA1_c03230 at 310.166 kb on - strand, within PGA1_c03230 at 310.299 kb on - strand, within PGA1_c03230 at 310.348 kb on - strand at 310.440 kb on + strand at 310.639 kb on + strand, within PGA1_c03240 at 310.675 kb on - strand, within PGA1_c03240 at 310.707 kb on - strand, within PGA1_c03240 at 310.721 kb on - strand, within PGA1_c03240 at 310.811 kb on + strand, within PGA1_c03240 at 310.816 kb on + strand, within PGA1_c03240 at 310.922 kb on + strand, within PGA1_c03240 at 310.971 kb on - strand, within PGA1_c03240 at 310.981 kb on - strand, within PGA1_c03240 at 310.990 kb on + strand, within PGA1_c03240 at 310.998 kb on - strand, within PGA1_c03240 at 311.024 kb on - strand, within PGA1_c03240 at 311.024 kb on - strand, within PGA1_c03240 at 311.049 kb on + strand at 311.057 kb on - strand at 311.076 kb on + strand at 311.099 kb on + strand at 311.099 kb on + strand at 311.107 kb on - strand at 311.107 kb on - strand at 311.107 kb on - strand at 311.107 kb on - strand at 311.107 kb on - strand at 311.109 kb on + strand at 311.124 kb on - strand at 311.179 kb on + strand, within PGA1_c03250 at 311.208 kb on + strand, within PGA1_c03250 at 311.221 kb on - strand, within PGA1_c03250 at 311.270 kb on + strand, within PGA1_c03250 at 311.331 kb on + strand, within PGA1_c03250 at 311.376 kb on + strand, within PGA1_c03250 at 311.411 kb on - strand, within PGA1_c03250 at 311.411 kb on - strand, within PGA1_c03250 at 311.420 kb on + strand, within PGA1_c03250 at 311.422 kb on - strand, within PGA1_c03250 at 311.452 kb on + strand, within PGA1_c03250 at 311.499 kb on + strand, within PGA1_c03250 at 311.508 kb on + strand, within PGA1_c03250 at 311.537 kb on - strand at 311.598 kb on + strand at 311.617 kb on - strand at 311.630 kb on + strand at 311.637 kb on + strand at 311.637 kb on + strand at 311.668 kb on - strand, within PGA1_c03260 at 311.707 kb on - strand, within PGA1_c03260 at 311.757 kb on - strand, within PGA1_c03260 at 311.841 kb on + strand, within PGA1_c03260 at 311.871 kb on + strand, within PGA1_c03260 at 311.871 kb on + strand, within PGA1_c03260 at 311.871 kb on + strand, within PGA1_c03260 at 311.913 kb on + strand, within PGA1_c03260 at 311.952 kb on + strand, within PGA1_c03260 at 311.962 kb on + strand, within PGA1_c03260 at 311.975 kb on - strand, within PGA1_c03260 at 311.984 kb on - strand, within PGA1_c03260 at 311.990 kb on + strand, within PGA1_c03260 at 311.998 kb on - strand, within PGA1_c03260 at 312.016 kb on + strand, within PGA1_c03260 at 312.048 kb on + strand, within PGA1_c03260 at 312.050 kb on + strand, within PGA1_c03260 at 312.050 kb on + strand, within PGA1_c03260 at 312.050 kb on + strand, within PGA1_c03260 at 312.050 kb on + strand, within PGA1_c03260 at 312.056 kb on - strand, within PGA1_c03260 at 312.058 kb on - strand, within PGA1_c03260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 309,459 - +1.0 309,460 + -0.3 309,460 + -1.0 309,468 - -0.8 309,468 - -1.6 309,468 - -2.9 309,468 - -0.4 309,515 - +1.8 309,520 - -0.1 309,739 + PGA1_c03230 0.27 -1.6 309,749 + PGA1_c03230 0.29 +0.8 309,782 + PGA1_c03230 0.32 +1.7 309,827 - PGA1_c03230 0.37 -1.6 309,874 - PGA1_c03230 0.42 +2.0 309,927 + PGA1_c03230 0.48 +0.9 309,927 + PGA1_c03230 0.48 +1.4 309,929 + PGA1_c03230 0.49 +0.0 309,929 + PGA1_c03230 0.49 -0.3 309,937 - PGA1_c03230 0.49 +0.1 309,937 - PGA1_c03230 0.49 +3.2 309,937 - PGA1_c03230 0.49 +0.3 309,986 - PGA1_c03230 0.55 +0.3 309,990 + PGA1_c03230 0.55 +0.1 309,990 + PGA1_c03230 0.55 -0.3 309,998 - PGA1_c03230 0.56 -0.2 309,998 - PGA1_c03230 0.56 +1.7 310,026 + PGA1_c03230 0.59 -0.5 310,045 + PGA1_c03230 0.61 +0.5 310,069 + PGA1_c03230 0.64 +0.9 310,153 + PGA1_c03230 0.73 +2.5 310,158 + PGA1_c03230 0.74 +0.6 310,166 - PGA1_c03230 0.75 +1.4 310,299 - PGA1_c03230 0.89 +2.5 310,348 - -0.4 310,440 + +0.3 310,639 + PGA1_c03240 0.29 +0.9 310,675 - PGA1_c03240 0.34 +1.0 310,707 - PGA1_c03240 0.39 +1.0 310,721 - PGA1_c03240 0.41 +1.0 310,811 + PGA1_c03240 0.55 +0.4 310,816 + PGA1_c03240 0.56 +0.8 310,922 + PGA1_c03240 0.73 +0.7 310,971 - PGA1_c03240 0.80 +1.0 310,981 - PGA1_c03240 0.82 +0.8 310,990 + PGA1_c03240 0.83 -0.6 310,998 - PGA1_c03240 0.84 +0.9 311,024 - PGA1_c03240 0.88 +1.3 311,024 - PGA1_c03240 0.88 +1.2 311,049 + +1.0 311,057 - +0.8 311,076 + -1.8 311,099 + -3.6 311,099 + -0.3 311,107 - +0.6 311,107 - -0.9 311,107 - +0.5 311,107 - -0.2 311,107 - +0.1 311,109 + +0.8 311,124 - +1.6 311,179 + PGA1_c03250 0.17 -0.9 311,208 + PGA1_c03250 0.23 -1.5 311,221 - PGA1_c03250 0.26 -0.5 311,270 + PGA1_c03250 0.36 -2.2 311,331 + PGA1_c03250 0.48 -1.1 311,376 + PGA1_c03250 0.57 +0.7 311,411 - PGA1_c03250 0.64 -0.9 311,411 - PGA1_c03250 0.64 +2.9 311,420 + PGA1_c03250 0.66 +0.2 311,422 - PGA1_c03250 0.67 +1.0 311,452 + PGA1_c03250 0.73 +0.4 311,499 + PGA1_c03250 0.82 -0.3 311,508 + PGA1_c03250 0.84 -1.0 311,537 - -0.4 311,598 + +1.1 311,617 - -0.3 311,630 + -1.0 311,637 + -1.5 311,637 + -0.0 311,668 - PGA1_c03260 0.11 -0.0 311,707 - PGA1_c03260 0.15 +1.2 311,757 - PGA1_c03260 0.22 +0.8 311,841 + PGA1_c03260 0.32 -0.5 311,871 + PGA1_c03260 0.36 +0.9 311,871 + PGA1_c03260 0.36 +0.3 311,871 + PGA1_c03260 0.36 -0.5 311,913 + PGA1_c03260 0.41 -0.7 311,952 + PGA1_c03260 0.46 +0.8 311,962 + PGA1_c03260 0.47 +0.4 311,975 - PGA1_c03260 0.48 +0.2 311,984 - PGA1_c03260 0.49 +0.4 311,990 + PGA1_c03260 0.50 +1.3 311,998 - PGA1_c03260 0.51 +0.0 312,016 + PGA1_c03260 0.53 -0.7 312,048 + PGA1_c03260 0.57 +0.5 312,050 + PGA1_c03260 0.58 -0.8 312,050 + PGA1_c03260 0.58 +3.1 312,050 + PGA1_c03260 0.58 -1.6 312,050 + PGA1_c03260 0.58 +0.7 312,056 - PGA1_c03260 0.58 +1.5 312,058 - PGA1_c03260 0.59 +0.3
Or see this region's nucleotide sequence