Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28690

Experiment: L-Proline (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Proline (C)
3,004,392	+		PGA1_c28680	0.66	+0.2
3,004,400	-		PGA1_c28680	0.67	-1.0
3,004,434	+		PGA1_c28680	0.68	+0.0
3,004,453	+		PGA1_c28680	0.69	+0.5
3,004,460	-		PGA1_c28680	0.69	+0.4
3,004,460	-		PGA1_c28680	0.69	+1.3
3,004,486	-		PGA1_c28680	0.70	-0.8
3,004,514	-		PGA1_c28680	0.71	-1.3
3,004,536	-		PGA1_c28680	0.72	-2.6
3,004,541	-		PGA1_c28680	0.72	-1.8
3,004,584	+		PGA1_c28680	0.74	+0.5
3,004,584	+		PGA1_c28680	0.74	+1.0
3,004,584	+		PGA1_c28680	0.74	+0.6
3,004,592	-		PGA1_c28680	0.74	+1.0
3,004,639	+		PGA1_c28680	0.76	+0.8
3,004,639	+		PGA1_c28680	0.76	-0.1
3,004,639	+		PGA1_c28680	0.76	-1.2
3,004,639	+		PGA1_c28680	0.76	+0.8
3,004,639	+		PGA1_c28680	0.76	+0.2
3,004,647	-		PGA1_c28680	0.76	-0.7
3,004,721	+		PGA1_c28680	0.79	-1.7
3,004,775	+		PGA1_c28680	0.81	+1.1
3,004,816	-		PGA1_c28680	0.83	+0.9
3,004,823	+		PGA1_c28680	0.83	+0.7
3,004,866	+		PGA1_c28680	0.85	+0.2
3,004,874	-		PGA1_c28680	0.85	-1.3
3,004,874	-		PGA1_c28680	0.85	-0.9
3,004,954	+		PGA1_c28680	0.88	+2.2
3,004,955	-		PGA1_c28680	0.88	-0.1
3,005,116	-				+2.9
3,005,118	+				-1.3
3,005,145	-				+0.9
3,005,335	+				-0.5
3,005,335	+				+1.7
3,005,343	-				+2.4
3,005,358	-				-1.0
3,005,407	-				+1.3
3,005,427	+				-0.5
3,005,435	-				+0.3
3,005,452	+				-1.5
3,005,463	+				-1.3
3,005,471	-				+0.4
3,005,478	+				+0.6
3,005,486	-				+1.0
3,005,495	+				+1.3
3,005,500	+				-0.7
3,005,518	-				-2.8
3,005,550	-				-0.1
3,005,550	-				+0.5
3,005,566	-				-0.4
3,005,607	-				-1.2
3,005,635	-				-2.0
3,005,682	-		PGA1_c28690	0.10	-0.1
3,005,735	+		PGA1_c28690	0.12	+0.5
3,005,735	+		PGA1_c28690	0.12	-2.4
3,005,735	+		PGA1_c28690	0.12	-0.1
3,005,735	+		PGA1_c28690	0.12	-3.0
3,005,736	-		PGA1_c28690	0.12	-0.8
3,005,743	-		PGA1_c28690	0.12	+2.3
3,005,743	-		PGA1_c28690	0.12	+1.0
3,005,748	+		PGA1_c28690	0.12	-0.1
3,005,772	+		PGA1_c28690	0.13	+0.9
3,005,777	+		PGA1_c28690	0.13	-1.5
3,005,785	-		PGA1_c28690	0.13	-0.6
3,005,795	+		PGA1_c28690	0.14	-1.0
3,005,803	-		PGA1_c28690	0.14	-0.4
3,005,821	-		PGA1_c28690	0.15	+0.3
3,005,837	-		PGA1_c28690	0.15	-1.6
3,005,837	-		PGA1_c28690	0.15	+1.6
3,005,837	-		PGA1_c28690	0.15	+0.4
3,005,837	-		PGA1_c28690	0.15	-1.0
3,005,851	+		PGA1_c28690	0.16	+0.9
3,005,873	-		PGA1_c28690	0.16	-0.0
3,005,886	+		PGA1_c28690	0.17	-2.2
3,005,886	+		PGA1_c28690	0.17	+1.6
3,005,894	-		PGA1_c28690	0.17	-2.1
3,005,894	-		PGA1_c28690	0.17	+0.5
3,005,894	-		PGA1_c28690	0.17	-1.1
3,005,916	-		PGA1_c28690	0.18	-0.1
3,005,953	+		PGA1_c28690	0.19	+0.1
3,005,955	-		PGA1_c28690	0.19	+0.2
3,006,085	-		PGA1_c28690	0.23	-0.3
3,006,182	+		PGA1_c28690	0.26	-0.4
3,006,190	-		PGA1_c28690	0.26	+0.2
3,006,190	-		PGA1_c28690	0.26	+0.6
3,006,190	-		PGA1_c28690	0.26	+1.0
3,006,190	-		PGA1_c28690	0.26	-2.0
3,006,276	-		PGA1_c28690	0.29	-0.7
3,006,291	-		PGA1_c28690	0.29	-1.1
3,006,295	+		PGA1_c28690	0.29	+0.5
3,006,303	-		PGA1_c28690	0.30	-0.2
3,006,304	-		PGA1_c28690	0.30	+1.2
3,006,326	-		PGA1_c28690	0.30	+0.6
3,006,362	+		PGA1_c28690	0.31	+0.1
3,006,363	+		PGA1_c28690	0.31	+0.7
3,006,363	+		PGA1_c28690	0.31	-2.2
3,006,371	-		PGA1_c28690	0.32	+0.3
3,006,433	+		PGA1_c28690	0.34	+1.2
3,006,446	-		PGA1_c28690	0.34	-0.3
3,006,460	-		PGA1_c28690	0.34	+1.2
3,006,479	+		PGA1_c28690	0.35	-2.1
3,006,487	-		PGA1_c28690	0.35	-0.1
3,006,487	-		PGA1_c28690	0.35	+0.7
3,006,492	-		PGA1_c28690	0.35	-0.5
3,006,571	+		PGA1_c28690	0.38	-0.8
3,006,680	+		PGA1_c28690	0.41	+0.4
3,006,686	+		PGA1_c28690	0.42	-1.1
3,006,733	-		PGA1_c28690	0.43	+0.5
3,006,752	-		PGA1_c28690	0.44	+0.4
3,006,843	-		PGA1_c28690	0.46	+1.3
3,006,873	+		PGA1_c28690	0.47	-0.8
3,007,026	+		PGA1_c28690	0.52	+1.7
3,007,072	-		PGA1_c28690	0.54	+1.1
3,007,074	+		PGA1_c28690	0.54	-0.9
3,007,101	+		PGA1_c28690	0.54	-0.5
3,007,117	+		PGA1_c28690	0.55	+0.5
3,007,155	+		PGA1_c28690	0.56	-1.5
3,007,163	-		PGA1_c28690	0.56	+1.7
3,007,196	+		PGA1_c28690	0.57	-1.3
3,007,206	-		PGA1_c28690	0.58	+0.7
3,007,262	-		PGA1_c28690	0.59	-0.4
3,007,262	-		PGA1_c28690	0.59	-0.7
3,007,276	+		PGA1_c28690	0.60	-2.0
3,007,284	-		PGA1_c28690	0.60	-0.7
3,007,284	-		PGA1_c28690	0.60	-2.0
3,007,284	-		PGA1_c28690	0.60	+0.2
3,007,292	+		PGA1_c28690	0.60	+1.5
3,007,292	+		PGA1_c28690	0.60	-2.1
3,007,297	+		PGA1_c28690	0.61	-2.2
3,007,380	+		PGA1_c28690	0.63	+0.6
3,007,386	-		PGA1_c28690	0.63	-0.1
3,007,388	-		PGA1_c28690	0.63	+0.8
3,007,415	+		PGA1_c28690	0.64	+0.3
3,007,470	+		PGA1_c28690	0.66	-0.4
3,007,520	-		PGA1_c28690	0.67	+0.1
3,007,575	+		PGA1_c28690	0.69	+0.8
3,007,588	-		PGA1_c28690	0.70	+0.3
3,007,681	+		PGA1_c28690	0.72	+1.1
3,007,722	+		PGA1_c28690	0.74	-0.4
3,007,730	-		PGA1_c28690	0.74	-0.8
3,007,730	-		PGA1_c28690	0.74	-1.8
3,007,730	-		PGA1_c28690	0.74	+0.1
3,007,730	-		PGA1_c28690	0.74	+0.2
3,007,769	+		PGA1_c28690	0.75	+1.5
3,007,801	-		PGA1_c28690	0.76	-2.2
3,007,832	-		PGA1_c28690	0.77	+0.8
3,007,929	+		PGA1_c28690	0.80	+1.0
3,008,019	-		PGA1_c28690	0.83	+1.7
3,008,019	-		PGA1_c28690	0.83	-0.8
3,008,025	+		PGA1_c28690	0.83	-0.3
3,008,025	+		PGA1_c28690	0.83	-0.8
3,008,035	+		PGA1_c28690	0.83	+2.0
3,008,174	-		PGA1_c28690	0.88	-0.6
3,008,188	+		PGA1_c28690	0.88	-2.7
3,008,196	-		PGA1_c28690	0.88	-1.1
3,008,225	+		PGA1_c28690	0.89	-1.7
3,008,228	-		PGA1_c28690	0.89	+0.9
3,008,270	-				-0.3
3,008,306	-				+1.0
3,008,328	-				+0.7
3,008,328	-				+1.1
3,008,328	-				+0.8
3,008,343	+				+1.8
3,008,352	+				+1.7
3,008,389	+				-1.1
3,008,420	+				+0.5
3,008,423	+				-0.8
3,008,493	+				+0.8
3,008,576	-				+0.2
3,008,595	+				+0.9
3,008,868	-		PGA1_c28700	0.19	+0.7
3,008,881	+		PGA1_c28700	0.21	-1.1
3,008,936	+		PGA1_c28700	0.28	-0.1
3,009,080	-		PGA1_c28700	0.47	-2.6
3,009,182	-		PGA1_c28700	0.60	-2.7
3,009,202	-		PGA1_c28700	0.62	-1.5
3,009,270	+		PGA1_c28700	0.71	-1.3
3,009,303	-		PGA1_c28700	0.75	-0.9
3,009,451	+				-0.1
3,009,487	+				+2.5
3,009,490	-				+1.1
3,009,500	-				+0.1
3,009,515	+				+0.5
3,009,551	+				-1.1
3,009,556	-				-1.7