Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11610 and PGA1_c11620 are separated by 43 nucleotides PGA1_c11620 and PGA1_c11630 are separated by 265 nucleotides PGA1_c11630 and PGA1_c11640 are separated by 435 nucleotides PGA1_c11640 and PGA1_c11650 are separated by 109 nucleotides
PGA1_c11610: PGA1_c11610 - Uncharacterized protein conserved in bacteria, at 1,199,687 to 1,200,238
_c11610
PGA1_c11620: PGA1_c11620 - Uncharacterized conserved protein, at 1,200,282 to 1,200,575
_c11620
PGA1_c11630: PGA1_c11630 - valyl-tRNA synthetase ValS, at 1,200,841 to 1,203,915
_c11630
PGA1_c11640: PGA1_c11640 - putative HTH-type transcriptional regulator, at 1,204,351 to 1,204,788
_c11640
PGA1_c11650: PGA1_c11650 - putative lysine/ornithine decarboxylase, at 1,204,898 to 1,206,049
_c11650
Position (kb)
1200
1201
1202
1203
1204 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1199.841 kb on + strand, within PGA1_c11610 at 1199.841 kb on + strand, within PGA1_c11610 at 1199.841 kb on + strand, within PGA1_c11610 at 1199.849 kb on - strand, within PGA1_c11610 at 1199.860 kb on - strand, within PGA1_c11610 at 1199.890 kb on + strand, within PGA1_c11610 at 1200.036 kb on + strand, within PGA1_c11610 at 1200.036 kb on + strand, within PGA1_c11610 at 1200.044 kb on - strand, within PGA1_c11610 at 1200.100 kb on + strand, within PGA1_c11610 at 1200.112 kb on - strand, within PGA1_c11610 at 1200.235 kb on + strand at 1200.245 kb on + strand at 1200.245 kb on + strand at 1200.245 kb on + strand at 1200.245 kb on + strand at 1200.248 kb on - strand at 1200.253 kb on - strand at 1200.253 kb on - strand at 1200.253 kb on - strand at 1200.275 kb on - strand at 1200.281 kb on - strand at 1200.281 kb on - strand at 1200.327 kb on - strand, within PGA1_c11620 at 1200.340 kb on + strand, within PGA1_c11620 at 1200.340 kb on + strand, within PGA1_c11620 at 1200.348 kb on - strand, within PGA1_c11620 at 1200.348 kb on - strand, within PGA1_c11620 at 1200.434 kb on - strand, within PGA1_c11620 at 1200.446 kb on + strand, within PGA1_c11620 at 1200.504 kb on + strand, within PGA1_c11620 at 1200.511 kb on + strand, within PGA1_c11620 at 1200.549 kb on - strand at 1200.550 kb on - strand at 1200.583 kb on + strand at 1200.616 kb on + strand at 1200.616 kb on + strand at 1200.616 kb on + strand at 1200.616 kb on + strand at 1200.616 kb on + strand at 1200.616 kb on + strand at 1200.621 kb on + strand at 1200.624 kb on - strand at 1200.624 kb on - strand at 1200.624 kb on - strand at 1200.624 kb on - strand at 1200.640 kb on - strand at 1200.712 kb on - strand at 1203.985 kb on - strand at 1204.001 kb on + strand at 1204.006 kb on + strand at 1204.006 kb on + strand at 1204.006 kb on + strand at 1204.006 kb on + strand at 1204.006 kb on + strand at 1204.009 kb on - strand at 1204.009 kb on - strand at 1204.014 kb on - strand at 1204.014 kb on - strand at 1204.016 kb on + strand at 1204.016 kb on + strand at 1204.077 kb on + strand at 1204.085 kb on - strand at 1204.085 kb on - strand at 1204.104 kb on - strand at 1204.159 kb on + strand at 1204.159 kb on + strand at 1204.170 kb on + strand at 1204.178 kb on - strand at 1204.217 kb on + strand at 1204.225 kb on - strand at 1204.236 kb on + strand at 1204.236 kb on + strand at 1204.244 kb on - strand at 1204.244 kb on - strand at 1204.251 kb on + strand at 1204.251 kb on + strand at 1204.251 kb on + strand at 1204.251 kb on + strand at 1204.251 kb on + strand at 1204.251 kb on + strand at 1204.259 kb on - strand at 1204.259 kb on - strand at 1204.259 kb on - strand at 1204.259 kb on - strand at 1204.351 kb on + strand at 1204.351 kb on + strand at 1204.351 kb on + strand at 1204.351 kb on + strand at 1204.356 kb on + strand at 1204.395 kb on - strand, within PGA1_c11640 at 1204.395 kb on - strand, within PGA1_c11640 at 1204.454 kb on + strand, within PGA1_c11640 at 1204.454 kb on + strand, within PGA1_c11640 at 1204.462 kb on - strand, within PGA1_c11640 at 1204.462 kb on - strand, within PGA1_c11640 at 1204.494 kb on - strand, within PGA1_c11640 at 1204.502 kb on + strand, within PGA1_c11640 at 1204.513 kb on - strand, within PGA1_c11640 at 1204.574 kb on + strand, within PGA1_c11640 at 1204.579 kb on + strand, within PGA1_c11640 at 1204.614 kb on + strand, within PGA1_c11640 at 1204.622 kb on - strand, within PGA1_c11640 at 1204.629 kb on + strand, within PGA1_c11640 at 1204.629 kb on + strand, within PGA1_c11640 at 1204.637 kb on - strand, within PGA1_c11640 at 1204.699 kb on + strand, within PGA1_c11640 at 1204.783 kb on + strand at 1204.906 kb on + strand at 1204.906 kb on + strand at 1204.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,199,841 + PGA1_c11610 0.28 -0.7 1,199,841 + PGA1_c11610 0.28 +1.0 1,199,841 + PGA1_c11610 0.28 +1.8 1,199,849 - PGA1_c11610 0.29 -0.3 1,199,860 - PGA1_c11610 0.31 -0.5 1,199,890 + PGA1_c11610 0.37 +0.7 1,200,036 + PGA1_c11610 0.63 -1.0 1,200,036 + PGA1_c11610 0.63 +0.8 1,200,044 - PGA1_c11610 0.65 -2.1 1,200,100 + PGA1_c11610 0.75 +1.1 1,200,112 - PGA1_c11610 0.77 -1.4 1,200,235 + +2.0 1,200,245 + +1.0 1,200,245 + +0.4 1,200,245 + +1.4 1,200,245 + +1.2 1,200,248 - +0.4 1,200,253 - +0.6 1,200,253 - -0.5 1,200,253 - -0.3 1,200,275 - +0.4 1,200,281 - -0.0 1,200,281 - +0.7 1,200,327 - PGA1_c11620 0.15 +0.2 1,200,340 + PGA1_c11620 0.20 +1.1 1,200,340 + PGA1_c11620 0.20 +0.2 1,200,348 - PGA1_c11620 0.22 -4.5 1,200,348 - PGA1_c11620 0.22 +0.3 1,200,434 - PGA1_c11620 0.52 +0.8 1,200,446 + PGA1_c11620 0.56 +1.7 1,200,504 + PGA1_c11620 0.76 +1.1 1,200,511 + PGA1_c11620 0.78 +1.0 1,200,549 - +1.3 1,200,550 - +0.7 1,200,583 + -0.3 1,200,616 + +0.8 1,200,616 + +0.5 1,200,616 + +0.7 1,200,616 + -0.3 1,200,616 + -2.0 1,200,616 + +0.8 1,200,621 + +1.4 1,200,624 - -0.5 1,200,624 - +0.9 1,200,624 - +0.9 1,200,624 - -0.2 1,200,640 - +0.1 1,200,712 - -0.9 1,203,985 - -0.2 1,204,001 + -0.2 1,204,006 + -2.0 1,204,006 + +0.4 1,204,006 + -0.7 1,204,006 + -0.5 1,204,006 + +0.3 1,204,009 - -1.8 1,204,009 - +0.1 1,204,014 - -0.1 1,204,014 - -1.9 1,204,016 + +0.9 1,204,016 + +0.2 1,204,077 + -0.4 1,204,085 - +0.3 1,204,085 - -1.0 1,204,104 - +1.2 1,204,159 + +1.5 1,204,159 + -0.3 1,204,170 + +0.4 1,204,178 - +0.6 1,204,217 + -0.7 1,204,225 - -0.2 1,204,236 + +1.0 1,204,236 + +0.5 1,204,244 - -0.8 1,204,244 - +0.4 1,204,251 + +1.0 1,204,251 + -0.7 1,204,251 + +0.9 1,204,251 + -1.0 1,204,251 + -0.7 1,204,251 + +0.3 1,204,259 - +1.6 1,204,259 - -0.3 1,204,259 - +0.4 1,204,259 - -0.3 1,204,351 + +0.6 1,204,351 + +0.1 1,204,351 + -1.9 1,204,351 + -0.4 1,204,356 + -0.6 1,204,395 - PGA1_c11640 0.10 +1.4 1,204,395 - PGA1_c11640 0.10 -1.0 1,204,454 + PGA1_c11640 0.24 +0.1 1,204,454 + PGA1_c11640 0.24 -1.7 1,204,462 - PGA1_c11640 0.25 -0.1 1,204,462 - PGA1_c11640 0.25 +1.5 1,204,494 - PGA1_c11640 0.33 +0.7 1,204,502 + PGA1_c11640 0.34 +1.4 1,204,513 - PGA1_c11640 0.37 -0.5 1,204,574 + PGA1_c11640 0.51 +0.3 1,204,579 + PGA1_c11640 0.52 -0.1 1,204,614 + PGA1_c11640 0.60 -0.4 1,204,622 - PGA1_c11640 0.62 -0.5 1,204,629 + PGA1_c11640 0.63 +0.2 1,204,629 + PGA1_c11640 0.63 +0.1 1,204,637 - PGA1_c11640 0.65 -0.4 1,204,699 + PGA1_c11640 0.79 -0.2 1,204,783 + -0.4 1,204,906 + -1.1 1,204,906 + -0.2 1,204,914 - +0.7
Or see this region's nucleotide sequence