Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11630

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11610 and PGA1_c11620 are separated by 43 nucleotidesPGA1_c11620 and PGA1_c11630 are separated by 265 nucleotidesPGA1_c11630 and PGA1_c11640 are separated by 435 nucleotidesPGA1_c11640 and PGA1_c11650 are separated by 109 nucleotides PGA1_c11610: PGA1_c11610 - Uncharacterized protein conserved in bacteria, at 1,199,687 to 1,200,238 _c11610 PGA1_c11620: PGA1_c11620 - Uncharacterized conserved protein, at 1,200,282 to 1,200,575 _c11620 PGA1_c11630: PGA1_c11630 - valyl-tRNA synthetase ValS, at 1,200,841 to 1,203,915 _c11630 PGA1_c11640: PGA1_c11640 - putative HTH-type transcriptional regulator, at 1,204,351 to 1,204,788 _c11640 PGA1_c11650: PGA1_c11650 - putative lysine/ornithine decarboxylase, at 1,204,898 to 1,206,049 _c11650 Position (kb) 1200 1201 1202 1203 1204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1199.841 kb on + strand, within PGA1_c11610at 1199.841 kb on + strand, within PGA1_c11610at 1199.841 kb on + strand, within PGA1_c11610at 1199.849 kb on - strand, within PGA1_c11610at 1199.860 kb on - strand, within PGA1_c11610at 1199.890 kb on + strand, within PGA1_c11610at 1200.036 kb on + strand, within PGA1_c11610at 1200.036 kb on + strand, within PGA1_c11610at 1200.044 kb on - strand, within PGA1_c11610at 1200.100 kb on + strand, within PGA1_c11610at 1200.112 kb on - strand, within PGA1_c11610at 1200.235 kb on + strandat 1200.245 kb on + strandat 1200.245 kb on + strandat 1200.245 kb on + strandat 1200.245 kb on + strandat 1200.248 kb on - strandat 1200.253 kb on - strandat 1200.253 kb on - strandat 1200.253 kb on - strandat 1200.275 kb on - strandat 1200.281 kb on - strandat 1200.281 kb on - strandat 1200.327 kb on - strand, within PGA1_c11620at 1200.340 kb on + strand, within PGA1_c11620at 1200.340 kb on + strand, within PGA1_c11620at 1200.348 kb on - strand, within PGA1_c11620at 1200.348 kb on - strand, within PGA1_c11620at 1200.434 kb on - strand, within PGA1_c11620at 1200.446 kb on + strand, within PGA1_c11620at 1200.504 kb on + strand, within PGA1_c11620at 1200.511 kb on + strand, within PGA1_c11620at 1200.549 kb on - strandat 1200.550 kb on - strandat 1200.583 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.621 kb on + strandat 1200.624 kb on - strandat 1200.624 kb on - strandat 1200.624 kb on - strandat 1200.624 kb on - strandat 1200.640 kb on - strandat 1200.712 kb on - strandat 1203.985 kb on - strandat 1204.001 kb on + strandat 1204.006 kb on + strandat 1204.006 kb on + strandat 1204.006 kb on + strandat 1204.006 kb on + strandat 1204.006 kb on + strandat 1204.009 kb on - strandat 1204.009 kb on - strandat 1204.014 kb on - strandat 1204.014 kb on - strandat 1204.016 kb on + strandat 1204.016 kb on + strandat 1204.077 kb on + strandat 1204.085 kb on - strandat 1204.085 kb on - strandat 1204.104 kb on - strandat 1204.159 kb on + strandat 1204.159 kb on + strandat 1204.170 kb on + strandat 1204.178 kb on - strandat 1204.217 kb on + strandat 1204.225 kb on - strandat 1204.236 kb on + strandat 1204.236 kb on + strandat 1204.244 kb on - strandat 1204.244 kb on - strandat 1204.251 kb on + strandat 1204.251 kb on + strandat 1204.251 kb on + strandat 1204.251 kb on + strandat 1204.251 kb on + strandat 1204.251 kb on + strandat 1204.259 kb on - strandat 1204.259 kb on - strandat 1204.259 kb on - strandat 1204.259 kb on - strandat 1204.351 kb on + strandat 1204.351 kb on + strandat 1204.351 kb on + strandat 1204.351 kb on + strandat 1204.356 kb on + strandat 1204.395 kb on - strand, within PGA1_c11640at 1204.395 kb on - strand, within PGA1_c11640at 1204.454 kb on + strand, within PGA1_c11640at 1204.454 kb on + strand, within PGA1_c11640at 1204.462 kb on - strand, within PGA1_c11640at 1204.462 kb on - strand, within PGA1_c11640at 1204.494 kb on - strand, within PGA1_c11640at 1204.502 kb on + strand, within PGA1_c11640at 1204.513 kb on - strand, within PGA1_c11640at 1204.574 kb on + strand, within PGA1_c11640at 1204.579 kb on + strand, within PGA1_c11640at 1204.614 kb on + strand, within PGA1_c11640at 1204.622 kb on - strand, within PGA1_c11640at 1204.629 kb on + strand, within PGA1_c11640at 1204.629 kb on + strand, within PGA1_c11640at 1204.637 kb on - strand, within PGA1_c11640at 1204.699 kb on + strand, within PGA1_c11640at 1204.783 kb on + strandat 1204.906 kb on + strandat 1204.906 kb on + strandat 1204.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,199,841 + PGA1_c11610 0.28 -0.7
1,199,841 + PGA1_c11610 0.28 +1.0
1,199,841 + PGA1_c11610 0.28 +1.8
1,199,849 - PGA1_c11610 0.29 -0.3
1,199,860 - PGA1_c11610 0.31 -0.5
1,199,890 + PGA1_c11610 0.37 +0.7
1,200,036 + PGA1_c11610 0.63 -1.0
1,200,036 + PGA1_c11610 0.63 +0.8
1,200,044 - PGA1_c11610 0.65 -2.1
1,200,100 + PGA1_c11610 0.75 +1.1
1,200,112 - PGA1_c11610 0.77 -1.4
1,200,235 + +2.0
1,200,245 + +1.0
1,200,245 + +0.4
1,200,245 + +1.4
1,200,245 + +1.2
1,200,248 - +0.4
1,200,253 - +0.6
1,200,253 - -0.5
1,200,253 - -0.3
1,200,275 - +0.4
1,200,281 - -0.0
1,200,281 - +0.7
1,200,327 - PGA1_c11620 0.15 +0.2
1,200,340 + PGA1_c11620 0.20 +1.1
1,200,340 + PGA1_c11620 0.20 +0.2
1,200,348 - PGA1_c11620 0.22 -4.5
1,200,348 - PGA1_c11620 0.22 +0.3
1,200,434 - PGA1_c11620 0.52 +0.8
1,200,446 + PGA1_c11620 0.56 +1.7
1,200,504 + PGA1_c11620 0.76 +1.1
1,200,511 + PGA1_c11620 0.78 +1.0
1,200,549 - +1.3
1,200,550 - +0.7
1,200,583 + -0.3
1,200,616 + +0.8
1,200,616 + +0.5
1,200,616 + +0.7
1,200,616 + -0.3
1,200,616 + -2.0
1,200,616 + +0.8
1,200,621 + +1.4
1,200,624 - -0.5
1,200,624 - +0.9
1,200,624 - +0.9
1,200,624 - -0.2
1,200,640 - +0.1
1,200,712 - -0.9
1,203,985 - -0.2
1,204,001 + -0.2
1,204,006 + -2.0
1,204,006 + +0.4
1,204,006 + -0.7
1,204,006 + -0.5
1,204,006 + +0.3
1,204,009 - -1.8
1,204,009 - +0.1
1,204,014 - -0.1
1,204,014 - -1.9
1,204,016 + +0.9
1,204,016 + +0.2
1,204,077 + -0.4
1,204,085 - +0.3
1,204,085 - -1.0
1,204,104 - +1.2
1,204,159 + +1.5
1,204,159 + -0.3
1,204,170 + +0.4
1,204,178 - +0.6
1,204,217 + -0.7
1,204,225 - -0.2
1,204,236 + +1.0
1,204,236 + +0.5
1,204,244 - -0.8
1,204,244 - +0.4
1,204,251 + +1.0
1,204,251 + -0.7
1,204,251 + +0.9
1,204,251 + -1.0
1,204,251 + -0.7
1,204,251 + +0.3
1,204,259 - +1.6
1,204,259 - -0.3
1,204,259 - +0.4
1,204,259 - -0.3
1,204,351 + +0.6
1,204,351 + +0.1
1,204,351 + -1.9
1,204,351 + -0.4
1,204,356 + -0.6
1,204,395 - PGA1_c11640 0.10 +1.4
1,204,395 - PGA1_c11640 0.10 -1.0
1,204,454 + PGA1_c11640 0.24 +0.1
1,204,454 + PGA1_c11640 0.24 -1.7
1,204,462 - PGA1_c11640 0.25 -0.1
1,204,462 - PGA1_c11640 0.25 +1.5
1,204,494 - PGA1_c11640 0.33 +0.7
1,204,502 + PGA1_c11640 0.34 +1.4
1,204,513 - PGA1_c11640 0.37 -0.5
1,204,574 + PGA1_c11640 0.51 +0.3
1,204,579 + PGA1_c11640 0.52 -0.1
1,204,614 + PGA1_c11640 0.60 -0.4
1,204,622 - PGA1_c11640 0.62 -0.5
1,204,629 + PGA1_c11640 0.63 +0.2
1,204,629 + PGA1_c11640 0.63 +0.1
1,204,637 - PGA1_c11640 0.65 -0.4
1,204,699 + PGA1_c11640 0.79 -0.2
1,204,783 + -0.4
1,204,906 + -1.1
1,204,906 + -0.2
1,204,914 - +0.7

Or see this region's nucleotide sequence