Strain Fitness in Shewanella amazonensis SB2B around Sama_3515

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
4,149,165	+		Sama_3513	0.18	-0.1
4,149,165	+		Sama_3513	0.18	-0.4
4,149,165	+		Sama_3513	0.18	-0.8
4,149,165	+		Sama_3513	0.18	+0.4
4,149,165	+		Sama_3513	0.18	-2.1
4,149,166	-		Sama_3513	0.19	-1.3
4,149,166	-		Sama_3513	0.19	+0.3
4,149,166	-		Sama_3513	0.19	-0.4
4,149,178	+		Sama_3513	0.21	+1.3
4,149,178	+		Sama_3513	0.21	-0.7
4,149,179	-		Sama_3513	0.21	+0.2
4,149,179	-		Sama_3513	0.21	+2.1
4,149,269	+		Sama_3513	0.40	-0.7
4,149,269	+		Sama_3513	0.40	-0.8
4,149,269	+		Sama_3513	0.40	+0.7
4,149,270	-		Sama_3513	0.41	-2.6
4,149,270	-		Sama_3513	0.41	+0.2
4,149,270	-		Sama_3513	0.41	+0.3
4,149,309	+		Sama_3513	0.49	-0.7
4,149,309	+		Sama_3513	0.49	-0.2
4,149,309	+		Sama_3513	0.49	-0.7
4,149,310	-		Sama_3513	0.49	-0.2
4,149,310	-		Sama_3513	0.49	-1.4
4,149,310	-		Sama_3513	0.49	-2.1
4,149,310	-		Sama_3513	0.49	-0.4
4,149,310	-		Sama_3513	0.49	-1.4
4,149,310	-		Sama_3513	0.49	+1.1
4,149,310	-		Sama_3513	0.49	+0.7
4,149,310	-		Sama_3513	0.49	-0.7
4,149,310	-		Sama_3513	0.49	-1.5
4,149,363	+		Sama_3513	0.60	-0.6
4,149,363	+		Sama_3513	0.60	+0.9
4,149,363	+		Sama_3513	0.60	-2.6
4,149,363	+		Sama_3513	0.60	-0.9
4,149,364	-		Sama_3513	0.60	-0.8
4,149,364	-		Sama_3513	0.60	+0.6
4,149,364	-		Sama_3513	0.60	-0.7
4,149,385	+		Sama_3513	0.65	-0.9
4,149,414	-		Sama_3513	0.71	+1.1
4,149,414	-		Sama_3513	0.71	-2.2
4,149,414	-		Sama_3513	0.71	-0.9
4,149,474	+		Sama_3513	0.84	-1.2
4,149,474	+		Sama_3513	0.84	-0.5
4,149,474	+		Sama_3513	0.84	-1.2
4,149,474	+		Sama_3513	0.84	+0.6
4,149,474	+		Sama_3513	0.84	-0.5
4,149,474	+		Sama_3513	0.84	-1.4
4,149,474	+		Sama_3513	0.84	-0.3
4,149,474	+		Sama_3513	0.84	-0.8
4,149,474	+		Sama_3513	0.84	-0.1
4,149,474	+		Sama_3513	0.84	-2.6
4,149,474	+		Sama_3513	0.84	+0.1
4,149,475	-		Sama_3513	0.84	+1.1
4,149,475	-		Sama_3513	0.84	+0.3
4,149,475	-		Sama_3513	0.84	-1.4
4,149,475	-		Sama_3513	0.84	-0.3
4,149,475	-		Sama_3513	0.84	+1.6
4,149,475	-		Sama_3513	0.84	+0.2
4,149,475	-		Sama_3513	0.84	+0.5
4,149,475	-		Sama_3513	0.84	+0.0
4,149,475	-		Sama_3513	0.84	-2.2
4,149,475	-		Sama_3513	0.84	+0.5
4,149,475	-		Sama_3513	0.84	-1.8
4,149,475	-		Sama_3513	0.84	+0.6
4,149,549	+				-1.1
4,149,551	+				+0.3
4,149,551	+				-0.9
4,149,551	+				-1.5
4,149,551	+				+0.3
4,149,551	+				+0.4
4,149,551	+				-0.2
4,149,551	+				-0.8
4,149,551	+				-1.1
4,149,551	+				+0.1
4,149,551	+				-0.7
4,149,551	+				+1.1
4,149,551	+				-1.1
4,149,551	+				-1.7
4,149,552	-				-1.3
4,149,552	-				-0.1
4,149,552	-				-0.4
4,149,552	-				-0.8
4,149,552	-				+0.9
4,149,552	-				-0.8
4,149,552	-				-0.9
4,149,552	-				-1.2
4,149,552	-				-0.8
4,149,554	+				+0.8
4,149,554	+				+0.3
4,149,554	+				-0.7
4,149,554	+				+0.2
4,149,554	+				+0.4
4,149,554	+				+1.1
4,149,554	+				+0.9
4,149,554	+				+1.6
4,149,554	+				+1.1
4,149,555	-				-0.4
4,149,555	-				-0.1
4,149,555	-				+0.3
4,149,555	-				+0.9
4,149,555	-				+1.4
4,149,586	+				-1.7
4,149,586	+				+0.4
4,149,586	+				+0.5
4,149,586	+				-0.4
4,149,586	+				+0.3
4,149,586	+				-0.7
4,149,586	+				-0.6
4,149,586	+				-1.1
4,149,586	+				-0.7
4,149,586	+				+2.2
4,149,587	-				+0.6
4,149,587	-				-1.4
4,149,587	-				-0.3
4,149,587	-				+2.1
4,149,587	-				+1.6
4,149,587	-				-0.8
4,149,587	-				-0.2
4,149,587	-				+0.5
4,149,587	-				+0.2
4,149,587	-				+0.3
4,149,649	+				-0.7
4,149,650	-				-1.9
4,149,650	-				-0.9
4,149,665	-				+0.5
4,149,688	+				+0.4
4,149,689	-				-0.4
4,149,722	+		Sama_3514	0.14	+0.5
4,149,722	+		Sama_3514	0.14	-1.6
4,149,722	+		Sama_3514	0.14	+0.1
4,149,723	-		Sama_3514	0.15	-0.5
4,149,723	-		Sama_3514	0.15	-0.8
4,149,723	-		Sama_3514	0.15	+0.7
4,149,723	-		Sama_3514	0.15	+0.6
4,149,723	-		Sama_3514	0.15	+1.1
4,149,725	+		Sama_3514	0.15	+0.6
4,149,726	-		Sama_3514	0.16	-0.5
4,149,726	-		Sama_3514	0.16	-0.6
4,149,733	+		Sama_3514	0.19	-1.4
4,149,733	+		Sama_3514	0.19	+0.4
4,149,733	+		Sama_3514	0.19	-1.1
4,149,734	-		Sama_3514	0.19	-0.9
4,149,734	-		Sama_3514	0.19	+0.8
4,149,848	+		Sama_3514	0.65	-0.4
4,149,848	+		Sama_3514	0.65	-1.4
4,149,848	+		Sama_3514	0.65	-0.4
4,149,848	+		Sama_3514	0.65	-1.1
4,149,880	+		Sama_3514	0.78	+2.8
4,149,880	+		Sama_3514	0.78	-0.9
4,149,880	+		Sama_3514	0.78	+2.4
4,149,880	+		Sama_3514	0.78	-0.6
4,149,881	-		Sama_3514	0.79	-0.3
4,149,881	-		Sama_3514	0.79	-2.2
4,149,881	-		Sama_3514	0.79	-0.4
4,149,881	-		Sama_3514	0.79	-0.2
4,149,881	-		Sama_3514	0.79	+0.6
4,149,884	+		Sama_3514	0.80	+0.6
4,149,884	+		Sama_3514	0.80	+2.6
4,149,884	+		Sama_3514	0.80	+0.3
4,149,884	+		Sama_3514	0.80	+1.4
4,149,884	+		Sama_3514	0.80	-0.7
4,149,884	+		Sama_3514	0.80	-0.1
4,149,884	+		Sama_3514	0.80	+0.1
4,149,885	-		Sama_3514	0.80	-0.9
4,149,885	-		Sama_3514	0.80	+0.3
4,149,885	-		Sama_3514	0.80	+1.4
4,149,885	-		Sama_3514	0.80	+0.8
4,149,885	-		Sama_3514	0.80	-1.7
4,149,885	-		Sama_3514	0.80	-0.6
4,149,885	-		Sama_3514	0.80	+0.3
4,149,898	+		Sama_3514	0.86	+0.3
4,149,898	+		Sama_3514	0.86	+1.6
4,149,914	-				-0.1
4,149,914	-				+1.3
4,149,914	-				-0.5
4,149,914	-				-1.2
4,149,939	-				-0.8
4,149,963	-				+0.1
4,149,985	-				+1.2
4,150,077	+				-1.2
4,150,121	+				+1.1
4,150,163	+				+0.7
4,150,164	-				-1.7
4,150,180	-				+0.1
4,150,220	-		Sama_3515	0.13	-2.4
4,150,233	+		Sama_3515	0.16	-0.2
4,150,233	+		Sama_3515	0.16	-0.1
4,150,234	-		Sama_3515	0.16	-1.6
4,150,234	-		Sama_3515	0.16	+1.1
4,150,234	-		Sama_3515	0.16	-0.2
4,150,234	-		Sama_3515	0.16	-1.6
4,150,234	-		Sama_3515	0.16	+0.8
4,150,234	-		Sama_3515	0.16	-0.9
4,150,234	-		Sama_3515	0.16	-1.2
4,150,237	+		Sama_3515	0.17	-0.7
4,150,237	+		Sama_3515	0.17	+1.1
4,150,297	+		Sama_3515	0.30	-0.2
4,150,299	+		Sama_3515	0.30	-0.9
4,150,300	-		Sama_3515	0.30	-0.9
4,150,325	+		Sama_3515	0.36	+0.8
4,150,326	-		Sama_3515	0.36	-1.5
4,150,353	+		Sama_3515	0.42	+0.1
4,150,379	+		Sama_3515	0.47	-1.3
4,150,379	+		Sama_3515	0.47	-0.2
4,150,379	+		Sama_3515	0.47	+0.7
4,150,379	+		Sama_3515	0.47	-0.7
4,150,411	+		Sama_3515	0.54	-1.9
4,150,479	+		Sama_3515	0.69	-0.7
4,150,479	+		Sama_3515	0.69	-0.7
4,150,479	+		Sama_3515	0.69	-0.7
4,150,480	-		Sama_3515	0.69	+0.6
4,150,480	-		Sama_3515	0.69	+1.1
4,150,487	+		Sama_3515	0.71	+0.8
4,150,487	+		Sama_3515	0.71	-0.1
4,150,488	-		Sama_3515	0.71	-1.3
4,150,488	-		Sama_3515	0.71	+0.3
4,150,543	+		Sama_3515	0.83	+0.6
4,150,563	+		Sama_3515	0.87	-0.4
4,150,564	-		Sama_3515	0.87	+0.5
4,150,634	-				+0.8
4,150,680	+		Sama_3516	0.15	-0.5
4,150,680	+		Sama_3516	0.15	-0.6
4,150,680	+		Sama_3516	0.15	-1.4
4,150,680	+		Sama_3516	0.15	-0.7
4,150,680	+		Sama_3516	0.15	+1.6
4,150,681	-		Sama_3516	0.15	-1.3
4,150,681	-		Sama_3516	0.15	+1.0
4,150,681	-		Sama_3516	0.15	+0.4
4,150,681	-		Sama_3516	0.15	-0.3
4,150,681	-		Sama_3516	0.15	+0.1
4,150,691	+		Sama_3516	0.18	-0.1
4,150,691	+		Sama_3516	0.18	-1.2
4,150,691	+		Sama_3516	0.18	-0.9
4,150,692	-		Sama_3516	0.18	-0.1
4,150,692	-		Sama_3516	0.18	+0.6
4,150,692	-		Sama_3516	0.18	+0.6
4,150,723	-		Sama_3516	0.25	-0.2
4,150,723	-		Sama_3516	0.25	+0.2
4,150,723	-		Sama_3516	0.25	+0.1
4,150,741	+		Sama_3516	0.30	-0.8
4,150,792	+		Sama_3516	0.42	+1.5
4,150,792	+		Sama_3516	0.42	+0.1
4,150,793	-		Sama_3516	0.42	+0.1
4,150,876	-		Sama_3516	0.61	+0.6
4,150,876	-		Sama_3516	0.61	+0.9
4,150,876	-		Sama_3516	0.61	-1.4
4,151,010	+				-0.7
4,151,010	+				-0.2
4,151,010	+				+0.3
4,151,010	+				+0.5
4,151,010	+				-0.1
4,151,011	-				+0.8
4,151,011	-				-0.3
4,151,011	-				+0.1
4,151,025	+				-0.9
4,151,025	+				-0.3
4,151,025	+				-1.4
4,151,025	+				-1.3
4,151,025	+				-0.4
4,151,025	+				-0.2
4,151,025	+				+1.3
4,151,025	+				-3.4
4,151,026	-				+1.1
4,151,026	-				+0.3
4,151,026	-				-0.7
4,151,026	-				-0.8
4,151,026	-				-1.7
4,151,026	-				-0.7
4,151,027	+				+0.3
4,151,027	+				-0.2
4,151,027	+				+1.6
4,151,028	-				-0.4
4,151,028	-				-1.7
4,151,071	+				-1.5
4,151,071	+				+0.5
4,151,071	+				-0.4
4,151,071	+				-1.6
4,151,071	+				+1.4
4,151,071	+				-0.2
4,151,071	+				-0.7
4,151,071	+				+0.6
4,151,071	+				+1.1
4,151,071	+				-0.0
4,151,071	+				-0.3
4,151,071	+				+1.2
4,151,071	+				-0.6
4,151,072	-				-0.9
4,151,072	-				-0.0
4,151,072	-				-0.9
4,151,072	-				+1.6
4,151,072	-				+0.3
4,151,072	-				+0.6
4,151,072	-				-0.5
4,151,072	-				-0.7
4,151,072	-				+0.9
4,151,072	-				+1.6
4,151,072	-				-1.8
4,151,072	-				-0.7
4,151,072	-				-0.4
4,151,072	-				+0.1
4,151,072	-				+0.3
4,151,072	-				-0.2
4,151,072	-				-0.6
4,151,119	+				+2.1
4,151,119	+				+0.1
4,151,119	+				+0.1
4,151,119	+				+0.5
4,151,119	+				+0.6
4,151,120	-				-1.1
4,151,120	-				+0.0
4,151,176	+				-0.8
4,151,176	+				-2.3
4,151,177	-				+2.8
4,151,177	-				-0.3
4,151,177	-				-0.4
4,151,177	-				+0.3
4,151,204	+				-0.4
4,151,204	+				+0.9
4,151,205	-				-1.6
4,151,205	-				-0.5
4,151,218	+				-0.4
4,151,218	+				-1.8
4,151,218	+				+0.2
4,151,219	-				-0.5
4,151,223	+				-0.6
4,151,223	+				-2.3
4,151,223	+				+1.1
4,151,291	+				-0.4
4,151,298	+				+1.5
4,151,298	+				-1.4
4,151,317	-				-2.1
4,151,335	-				+1.3
4,151,376	+				+0.0
4,151,479	+				-1.8
4,151,479	+				+0.2
4,151,479	+				-0.2
4,151,479	+				-0.7
4,151,480	-				-2.3
4,151,480	-				-0.5
4,151,480	-				-0.8
4,151,480	-				-0.8
4,151,480	-				+0.9
4,151,541	-		Sama_3517	0.15	-0.5
4,151,559	+		Sama_3517	0.18	-1.6
4,151,568	-		Sama_3517	0.19	-1.7
4,151,585	+		Sama_3517	0.22	+0.0