Strain Fitness in Shewanella amazonensis SB2B around Sama_3506

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
4,138,269	+		Sama_3504	0.87	-1.6
4,138,270	-		Sama_3504	0.87	-2.0
4,138,303	-				-1.2
4,138,330	+				-0.4
4,138,330	+				+0.5
4,138,330	+				-1.0
4,138,330	+				-1.4
4,138,330	+				+0.6
4,138,330	+				+2.2
4,138,330	+				+0.2
4,138,330	+				-1.5
4,138,330	+				-0.4
4,138,331	-				-0.7
4,138,331	-				+1.3
4,138,331	-				+0.4
4,138,331	-				+0.4
4,138,331	-				-0.4
4,138,331	-				-0.9
4,138,331	-				-0.4
4,138,331	-				-0.8
4,138,331	-				+0.3
4,138,331	-				-0.6
4,138,331	-				-0.3
4,138,331	-				+0.2
4,138,331	-				-0.4
4,138,331	-				-0.7
4,138,331	-				-1.3
4,138,331	-				+0.8
4,138,331	-				-0.9
4,138,331	-				+0.8
4,138,331	-				+0.3
4,138,331	-				-1.1
4,138,357	-				-0.7
4,138,383	+				+2.6
4,138,383	+				+1.0
4,138,383	+				-0.0
4,138,383	+				-1.2
4,138,384	-				-1.7
4,138,417	+				+2.1
4,138,417	+				+0.8
4,138,417	+				+1.1
4,138,417	+				-0.8
4,138,417	+				+0.6
4,138,417	+				+0.2
4,138,417	+				+0.1
4,138,417	+				-1.3
4,138,417	+				+0.6
4,138,417	+				-1.4
4,138,418	-				+1.8
4,138,521	-		Sama_3505	0.16	+0.3
4,138,565	-		Sama_3505	0.22	+0.5
4,139,174	+				+0.8
4,139,174	+				-0.8
4,139,175	-				+0.4
4,139,195	+				-0.4
4,139,196	-				-0.9
4,139,198	+				-1.5
4,139,198	+				-1.0
4,139,198	+				-1.6
4,139,198	+				+0.1
4,139,199	-				-0.4
4,139,199	-				+0.7
4,139,199	-				-1.8
4,139,246	+				-0.6
4,139,246	+				-0.1
4,139,246	+				-1.4
4,139,246	+				-2.1
4,139,247	-				+0.1
4,139,247	-				+0.2
4,139,263	-				-0.6
4,139,273	-				-0.9
4,139,298	+		Sama_3506	0.14	-1.1
4,139,323	-		Sama_3506	0.19	-0.8
4,139,368	+		Sama_3506	0.28	+1.1
4,139,368	+		Sama_3506	0.28	+0.1
4,139,369	-		Sama_3506	0.28	-1.8
4,139,369	-		Sama_3506	0.28	-0.2
4,139,467	+		Sama_3506	0.48	-1.6
4,139,467	+		Sama_3506	0.48	-1.7
4,139,467	+		Sama_3506	0.48	-1.9
4,139,467	+		Sama_3506	0.48	+0.6
4,139,467	+		Sama_3506	0.48	-0.6
4,139,467	+		Sama_3506	0.48	-0.1
4,139,467	+		Sama_3506	0.48	-0.2
4,139,467	+		Sama_3506	0.48	-0.9
4,139,468	-		Sama_3506	0.48	+0.9
4,139,468	-		Sama_3506	0.48	-0.4
4,139,468	-		Sama_3506	0.48	-0.5
4,139,468	-		Sama_3506	0.48	+1.1
4,139,468	-		Sama_3506	0.48	-1.4
4,139,468	-		Sama_3506	0.48	-0.4
4,139,557	+		Sama_3506	0.66	-1.4
4,139,558	-		Sama_3506	0.66	-0.4
4,139,563	+		Sama_3506	0.67	-0.6
4,139,643	-		Sama_3506	0.83	+0.3
4,139,643	-		Sama_3506	0.83	+0.7
4,139,643	-		Sama_3506	0.83	-2.1
4,139,664	+		Sama_3506	0.87	-0.5
4,139,664	+		Sama_3506	0.87	-1.6
4,139,664	+		Sama_3506	0.87	-0.8
4,139,664	+		Sama_3506	0.87	-0.4
4,139,664	+		Sama_3506	0.87	+0.6
4,139,665	-		Sama_3506	0.87	-1.9
4,139,665	-		Sama_3506	0.87	-0.0
4,139,665	-		Sama_3506	0.87	+0.1
4,139,665	-		Sama_3506	0.87	-1.3
4,139,675	+		Sama_3506	0.89	+0.1
4,139,676	-		Sama_3506	0.89	-0.2
4,139,676	-		Sama_3506	0.89	-0.7
4,139,676	-		Sama_3506	0.89	-2.3
4,139,676	-		Sama_3506	0.89	-0.7
4,139,707	+				-1.1
4,139,707	+				+1.4
4,139,708	-				-1.1
4,139,708	-				+0.3
4,139,708	-				+0.6
4,139,708	-				-0.2
4,139,708	-				+0.4
4,139,758	-				-1.3
4,139,803	+				-0.3
4,139,850	+				+1.5
4,139,850	+				-0.2
4,139,850	+				-0.7
4,139,850	+				+1.4
4,139,851	-				+0.2
4,139,851	-				-0.3
4,139,851	-				+0.9
4,139,851	-				-0.2
4,139,851	-				-0.9
4,139,851	-				+0.5
4,139,854	+				+0.3
4,139,854	+				-0.6
4,139,854	+				-0.8
4,139,854	+				+2.4
4,139,854	+				-0.5
4,139,855	-				-1.2
4,139,908	+				-1.2
4,139,908	+				-0.4
4,139,908	+				-1.1
4,139,908	+				+1.0
4,139,908	+				-1.3
4,139,908	+				+0.6
4,139,909	-				+0.1
4,139,909	-				-0.7
4,139,909	-				-1.9
4,139,909	-				+0.5
4,139,910	+				+0.9
4,139,910	+				+0.0
4,139,910	+				-0.5
4,139,910	+				-1.3
4,139,910	+				+0.6
4,139,910	+				+0.8
4,139,910	+				+0.7
4,139,910	+				-1.2
4,139,910	+				-1.0
4,139,910	+				+1.4
4,139,911	-				-0.9
4,139,911	-				-2.1
4,139,911	-				-0.2
4,139,911	-				+0.2
4,139,911	-				-2.4
4,139,911	-				-0.5
4,139,911	-				+1.3
4,139,928	+		Sama_3507	0.10	-0.9
4,139,928	+		Sama_3507	0.10	+1.6
4,139,929	-		Sama_3507	0.10	+1.3
4,139,929	-		Sama_3507	0.10	-0.5
4,139,929	-		Sama_3507	0.10	-1.0
4,139,957	-		Sama_3507	0.12	-0.3
4,139,995	-		Sama_3507	0.14	+0.7
4,140,106	+		Sama_3507	0.19	-1.8
4,140,107	-		Sama_3507	0.19	-0.1
4,140,107	-		Sama_3507	0.19	+1.2
4,140,107	-		Sama_3507	0.19	+0.1
4,140,120	-		Sama_3507	0.20	+0.1
4,140,176	+		Sama_3507	0.23	+1.6
4,140,193	-		Sama_3507	0.24	-0.5
4,140,193	-		Sama_3507	0.24	+0.4
4,140,214	+		Sama_3507	0.25	-1.2
4,140,215	-		Sama_3507	0.25	+1.3
4,140,215	-		Sama_3507	0.25	+3.1
4,140,215	-		Sama_3507	0.25	-0.7
4,140,227	+		Sama_3507	0.26	+0.2
4,140,227	+		Sama_3507	0.26	+1.3
4,140,227	+		Sama_3507	0.26	+1.1
4,140,227	+		Sama_3507	0.26	-0.9
4,140,228	-		Sama_3507	0.26	+1.6
4,140,228	-		Sama_3507	0.26	+1.0
4,140,228	-		Sama_3507	0.26	+0.1
4,140,228	-		Sama_3507	0.26	-0.2
4,140,243	+		Sama_3507	0.26	+0.8
4,140,243	+		Sama_3507	0.26	-0.0
4,140,243	+		Sama_3507	0.26	+1.1
4,140,244	-		Sama_3507	0.27	-0.5
4,140,244	-		Sama_3507	0.27	-0.1
4,140,257	-		Sama_3507	0.27	+1.2
4,140,260	-		Sama_3507	0.27	-0.8
4,140,282	+		Sama_3507	0.28	-0.8
4,140,283	-		Sama_3507	0.29	+0.3
4,140,283	-		Sama_3507	0.29	-0.9
4,140,283	-		Sama_3507	0.29	+0.3
4,140,325	+		Sama_3507	0.31	-0.2
4,140,326	-		Sama_3507	0.31	-0.7
4,140,419	+		Sama_3507	0.36	+0.3
4,140,473	-		Sama_3507	0.38	-0.2
4,140,508	+		Sama_3507	0.40	-1.3
4,140,508	+		Sama_3507	0.40	-1.6
4,140,509	-		Sama_3507	0.40	+0.9
4,140,509	-		Sama_3507	0.40	+1.2
4,140,509	-		Sama_3507	0.40	+0.1
4,140,509	-		Sama_3507	0.40	+0.6
4,140,509	-		Sama_3507	0.40	+0.4
4,140,534	+		Sama_3507	0.41	-1.6
4,140,534	-		Sama_3507	0.41	-1.8
4,140,534	+		Sama_3507	0.41	-2.4
4,140,535	-		Sama_3507	0.42	-1.6
4,140,535	-		Sama_3507	0.42	-0.9
4,140,535	-		Sama_3507	0.42	+0.6
4,140,535	-		Sama_3507	0.42	-0.1
4,140,535	-		Sama_3507	0.42	-1.1
4,140,538	+		Sama_3507	0.42	+0.3
4,140,538	+		Sama_3507	0.42	+1.5
4,140,539	-		Sama_3507	0.42	+0.1
4,140,539	-		Sama_3507	0.42	+2.6
4,140,566	+		Sama_3507	0.43	-0.4
4,140,566	+		Sama_3507	0.43	-0.0
4,140,567	-		Sama_3507	0.43	-0.8
4,140,567	-		Sama_3507	0.43	-1.2
4,140,567	-		Sama_3507	0.43	-1.1
4,140,617	+		Sama_3507	0.46	-1.5
4,140,641	-		Sama_3507	0.47	+1.6
4,140,641	-		Sama_3507	0.47	+1.6
4,140,708	+		Sama_3507	0.50	-1.1
4,140,708	+		Sama_3507	0.50	-1.4
4,140,708	+		Sama_3507	0.50	-1.2
4,140,709	-		Sama_3507	0.50	-0.8
4,140,709	-		Sama_3507	0.50	+2.3
4,140,709	-		Sama_3507	0.50	+0.2
4,140,709	-		Sama_3507	0.50	-0.9