Strain Fitness in Shewanella amazonensis SB2B around Sama_3415

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
4,041,532	+		Sama_3414	0.57	+1.4
4,041,533	-		Sama_3414	0.57	-1.1
4,041,552	+		Sama_3414	0.58	-1.1
4,041,553	-		Sama_3414	0.58	+0.2
4,041,553	-		Sama_3414	0.58	+0.3
4,041,640	+		Sama_3414	0.62	-0.1
4,041,640	+		Sama_3414	0.62	-1.4
4,041,641	-		Sama_3414	0.62	+0.3
4,041,641	-		Sama_3414	0.62	+1.4
4,041,641	-		Sama_3414	0.62	+0.8
4,041,641	-		Sama_3414	0.62	-1.0
4,041,719	-		Sama_3414	0.66	-0.2
4,041,775	-		Sama_3414	0.69	+0.4
4,041,844	+		Sama_3414	0.72	+0.3
4,041,844	+		Sama_3414	0.72	+0.1
4,041,844	+		Sama_3414	0.72	+0.5
4,041,845	-		Sama_3414	0.72	+0.1
4,041,845	-		Sama_3414	0.72	-1.7
4,041,845	-		Sama_3414	0.72	-1.2
4,041,853	+		Sama_3414	0.73	-0.1
4,041,853	+		Sama_3414	0.73	-0.2
4,041,853	+		Sama_3414	0.73	+0.2
4,041,853	+		Sama_3414	0.73	+2.6
4,041,854	-		Sama_3414	0.73	-0.4
4,041,854	-		Sama_3414	0.73	-0.4
4,041,854	-		Sama_3414	0.73	-0.8
4,041,863	+		Sama_3414	0.73	+0.3
4,041,863	+		Sama_3414	0.73	-1.0
4,041,864	-		Sama_3414	0.73	-0.2
4,041,864	-		Sama_3414	0.73	-1.6
4,041,864	-		Sama_3414	0.73	-1.2
4,041,864	-		Sama_3414	0.73	+0.5
4,041,995	+		Sama_3414	0.80	-0.8
4,041,996	-		Sama_3414	0.80	+1.0
4,042,057	+		Sama_3414	0.83	-0.3
4,042,057	+		Sama_3414	0.83	-0.3
4,042,057	+		Sama_3414	0.83	-0.7
4,042,057	+		Sama_3414	0.83	-2.4
4,042,057	+		Sama_3414	0.83	+0.1
4,042,058	-		Sama_3414	0.83	-0.5
4,042,058	-		Sama_3414	0.83	-1.2
4,042,089	+		Sama_3414	0.84	+0.0
4,042,089	+		Sama_3414	0.84	-0.7
4,042,141	-		Sama_3414	0.87	-0.4
4,042,141	-		Sama_3414	0.87	-0.6
4,042,141	-		Sama_3414	0.87	-0.6
4,042,219	+				-0.7
4,042,219	+				+0.6
4,042,219	+				-0.3
4,042,219	+				+0.1
4,042,219	+				-0.9
4,042,219	+				-1.5
4,042,220	-				-0.9
4,042,220	-				+0.1
4,042,220	-				+0.6
4,042,220	-				+0.1
4,042,220	-				-1.1
4,042,220	-				-0.2
4,042,277	+				-1.4
4,042,278	-				-0.1
4,042,306	+				-0.7
4,042,307	-				-0.6
4,042,307	-				-1.6
4,042,307	-				-0.7
4,042,309	-				+0.4
4,042,320	+				+0.3
4,042,321	-				-1.5
4,042,354	+				-0.7
4,042,354	+				-1.1
4,042,354	+				-1.1
4,042,354	+				+0.2
4,042,354	+				+1.6
4,042,354	+				-0.3
4,042,355	-				-0.7
4,042,355	-				-0.7
4,042,361	+				+0.0
4,042,361	+				-1.0
4,042,361	+				-0.3
4,042,361	+				-1.2
4,042,361	+				-0.1
4,042,361	+				-1.9
4,042,400	+				-0.2
4,042,400	+				-1.3
4,042,401	-				-0.7
4,042,445	+				-0.2
4,042,445	+				+0.2
4,042,446	-				-1.3
4,042,453	+				-1.0
4,042,454	-				+0.1
4,042,464	-				-0.6
4,042,485	+				-1.6
4,042,485	+				-2.4
4,042,486	-				-2.7
4,042,486	-				-0.8
4,042,486	-				-1.6
4,042,486	-				+2.6
4,042,512	+				-1.2
4,042,512	+				-0.4
4,042,512	+				-1.1
4,042,513	-				-0.6
4,042,513	-				-0.9
4,042,516	+				+2.6
4,042,517	-				-0.9
4,042,517	-				-0.7
4,042,543	+				-1.4
4,042,543	+				+1.0
4,042,544	-				-1.3
4,042,627	-				-2.6
4,042,672	+		Sama_3415	0.12	-1.8
4,042,673	-		Sama_3415	0.12	-2.1
4,042,673	-		Sama_3415	0.12	-0.7
4,042,702	-		Sama_3415	0.13	-0.2
4,042,721	+		Sama_3415	0.14	+0.0
4,042,721	+		Sama_3415	0.14	-2.0
4,042,722	-		Sama_3415	0.14	+0.0
4,042,801	-		Sama_3415	0.19	+0.8
4,042,816	+		Sama_3415	0.20	-0.7
4,042,816	+		Sama_3415	0.20	-0.4
4,042,816	+		Sama_3415	0.20	+1.6
4,042,816	+		Sama_3415	0.20	-0.2
4,042,817	-		Sama_3415	0.20	-1.9
4,042,817	-		Sama_3415	0.20	-1.4
4,042,817	-		Sama_3415	0.20	+1.0
4,042,827	+		Sama_3415	0.20	-1.2
4,042,827	+		Sama_3415	0.20	+0.2
4,042,828	-		Sama_3415	0.20	-0.9
4,042,853	+		Sama_3415	0.22	-2.5
4,042,853	+		Sama_3415	0.22	+0.6
4,042,853	+		Sama_3415	0.22	-0.2
4,042,854	-		Sama_3415	0.22	+2.6
4,042,854	-		Sama_3415	0.22	-1.2
4,042,854	-		Sama_3415	0.22	-2.5
4,042,854	-		Sama_3415	0.22	-1.9
4,042,854	-		Sama_3415	0.22	+0.0
4,042,854	-		Sama_3415	0.22	-0.6
4,042,854	-		Sama_3415	0.22	-1.1
4,042,854	-		Sama_3415	0.22	-0.9
4,042,854	-		Sama_3415	0.22	-1.2
4,042,854	-		Sama_3415	0.22	-0.4
4,042,854	-		Sama_3415	0.22	-1.9
4,042,862	+		Sama_3415	0.22	-1.8
4,042,863	-		Sama_3415	0.22	+0.3
4,042,881	-		Sama_3415	0.23	-1.1
4,042,911	+		Sama_3415	0.25	-0.5
4,042,912	-		Sama_3415	0.25	-1.2
4,042,912	-		Sama_3415	0.25	-1.6
4,042,912	-		Sama_3415	0.25	-0.7
4,042,951	-		Sama_3415	0.27	-1.3
4,043,078	+		Sama_3415	0.34	-1.5
4,043,079	-		Sama_3415	0.34	-2.2
4,043,079	-		Sama_3415	0.34	-0.7
4,043,117	-		Sama_3415	0.36	-0.6
4,043,117	-		Sama_3415	0.36	+0.0
4,043,145	-		Sama_3415	0.38	-0.7
4,043,145	-		Sama_3415	0.38	+0.6
4,043,175	+		Sama_3415	0.39	-0.1
4,043,175	+		Sama_3415	0.39	-1.7
4,043,176	-		Sama_3415	0.39	-1.8
4,043,236	+		Sama_3415	0.43	-0.6
4,043,257	+		Sama_3415	0.44	-0.6
4,043,258	-		Sama_3415	0.44	-1.2
4,043,258	-		Sama_3415	0.44	-1.9
4,043,289	+		Sama_3415	0.46	+1.6
4,043,303	+		Sama_3415	0.46	-1.1
4,043,303	+		Sama_3415	0.46	-2.5
4,043,304	-		Sama_3415	0.46	-0.3
4,043,304	-		Sama_3415	0.46	-0.7
4,043,304	-		Sama_3415	0.46	-0.9
4,043,304	-		Sama_3415	0.46	-0.2
4,043,304	-		Sama_3415	0.46	-0.5
4,043,307	+		Sama_3415	0.47	-0.3
4,043,307	+		Sama_3415	0.47	-0.8
4,043,307	+		Sama_3415	0.47	-1.1
4,043,307	+		Sama_3415	0.47	+0.6
4,043,308	-		Sama_3415	0.47	-2.8
4,043,308	-		Sama_3415	0.47	+1.1
4,043,308	-		Sama_3415	0.47	-1.5
4,043,308	-		Sama_3415	0.47	-1.1
4,043,334	+		Sama_3415	0.48	-0.6
4,043,334	+		Sama_3415	0.48	-0.7
4,043,335	-		Sama_3415	0.48	-1.5
4,043,338	+		Sama_3415	0.48	-1.9
4,043,400	+		Sama_3415	0.52	-0.4
4,043,401	-		Sama_3415	0.52	-1.7
4,043,401	-		Sama_3415	0.52	-1.3
4,043,507	+		Sama_3415	0.58	+0.0
4,043,507	+		Sama_3415	0.58	-2.3
4,043,507	+		Sama_3415	0.58	-0.6
4,043,507	+		Sama_3415	0.58	-1.3
4,043,508	-		Sama_3415	0.58	-1.7
4,043,508	-		Sama_3415	0.58	+0.3
4,043,508	-		Sama_3415	0.58	-2.1
4,043,508	-		Sama_3415	0.58	-0.2
4,043,508	-		Sama_3415	0.58	-0.7
4,043,515	+		Sama_3415	0.58	-1.3
4,043,516	-		Sama_3415	0.58	-0.6
4,043,530	-		Sama_3415	0.59	-2.3
4,043,530	-		Sama_3415	0.59	-1.9
4,043,545	-		Sama_3415	0.60	-0.3
4,043,602	-		Sama_3415	0.63	-0.9
4,043,608	+		Sama_3415	0.63	-1.0
4,043,609	-		Sama_3415	0.63	-1.7
4,043,627	+		Sama_3415	0.64	-0.2
4,043,627	+		Sama_3415	0.64	+0.4
4,043,627	+		Sama_3415	0.64	+0.0
4,043,627	+		Sama_3415	0.64	-1.6
4,043,627	+		Sama_3415	0.64	+0.3
4,043,627	+		Sama_3415	0.64	-2.1
4,043,628	-		Sama_3415	0.64	-1.0
4,043,628	-		Sama_3415	0.64	-1.7
4,043,628	-		Sama_3415	0.64	-1.7
4,043,636	+		Sama_3415	0.65	-0.9
4,043,636	+		Sama_3415	0.65	-1.7
4,043,637	-		Sama_3415	0.65	-1.1
4,043,637	-		Sama_3415	0.65	-2.6
4,043,786	+		Sama_3415	0.73	-0.4
4,043,786	+		Sama_3415	0.73	+0.6
4,043,786	+		Sama_3415	0.73	+1.0
4,043,786	+		Sama_3415	0.73	-1.2
4,043,786	+		Sama_3415	0.73	-2.4
4,043,787	-		Sama_3415	0.73	-0.6
4,043,787	-		Sama_3415	0.73	-1.0
4,043,787	-		Sama_3415	0.73	-1.0
4,043,788	+		Sama_3415	0.73	-0.4
4,043,788	+		Sama_3415	0.73	-0.4
4,043,788	+		Sama_3415	0.73	-0.2
4,043,788	+		Sama_3415	0.73	-1.1
4,043,789	-		Sama_3415	0.73	+0.3
4,043,789	-		Sama_3415	0.73	-0.4
4,043,845	+		Sama_3415	0.76	-1.5
4,043,846	-		Sama_3415	0.76	-2.1
4,043,846	-		Sama_3415	0.76	-1.5
4,043,846	-		Sama_3415	0.76	-2.1
4,043,846	-		Sama_3415	0.76	-1.0
4,043,854	+		Sama_3415	0.77	-2.1
4,043,854	+		Sama_3415	0.77	-1.5
4,043,854	+		Sama_3415	0.77	+0.3
4,043,854	+		Sama_3415	0.77	-1.6
4,043,854	+		Sama_3415	0.77	+1.3
4,043,855	-		Sama_3415	0.77	+0.6
4,043,855	-		Sama_3415	0.77	-0.4
4,043,855	-		Sama_3415	0.77	-0.7
4,043,855	-		Sama_3415	0.77	-0.3
4,043,855	-		Sama_3415	0.77	-1.1
4,043,855	-		Sama_3415	0.77	-0.9
4,043,855	-		Sama_3415	0.77	+0.0
4,043,855	-		Sama_3415	0.77	-0.1
4,043,855	-		Sama_3415	0.77	+0.4
4,043,855	-		Sama_3415	0.77	-1.9
4,043,857	+		Sama_3415	0.77	-0.5
4,043,858	-		Sama_3415	0.77	-2.3
4,043,858	-		Sama_3415	0.77	-1.5
4,043,907	+		Sama_3415	0.80	-2.4
4,043,907	+		Sama_3415	0.80	-2.2
4,043,908	-		Sama_3415	0.80	-1.4
4,043,992	+		Sama_3415	0.84	-2.1
4,043,992	+		Sama_3415	0.84	+0.4
4,043,992	+		Sama_3415	0.84	-0.3
4,043,992	+		Sama_3415	0.84	-0.2
4,043,993	-		Sama_3415	0.84	-2.7
4,043,993	-		Sama_3415	0.84	-2.5
4,043,993	-		Sama_3415	0.84	-1.0
4,043,993	-		Sama_3415	0.84	-1.4
4,043,993	-		Sama_3415	0.84	-0.4
4,044,006	+		Sama_3415	0.85	-1.6
4,044,006	+		Sama_3415	0.85	-0.7
4,044,006	+		Sama_3415	0.85	-2.2
4,044,007	-		Sama_3415	0.85	-0.9
4,044,007	-		Sama_3415	0.85	-1.6
4,044,013	+		Sama_3415	0.85	+1.0
4,044,013	+		Sama_3415	0.85	-1.8
4,044,013	+		Sama_3415	0.85	-1.9
4,044,013	+		Sama_3415	0.85	+0.6
4,044,014	-		Sama_3415	0.86	-1.3
4,044,014	-		Sama_3415	0.86	-1.5
4,044,014	-		Sama_3415	0.86	-0.4
4,044,059	-		Sama_3415	0.88	-2.1
4,044,059	-		Sama_3415	0.88	-2.3
4,044,059	-		Sama_3415	0.88	-1.7
4,044,059	-		Sama_3415	0.88	-2.1
4,044,066	+		Sama_3415	0.88	-1.0
4,044,066	+		Sama_3415	0.88	-0.9
4,044,066	+		Sama_3415	0.88	+0.1
4,044,067	-		Sama_3415	0.88	+0.3
4,044,067	-		Sama_3415	0.88	-1.2
4,044,067	-		Sama_3415	0.88	-2.6
4,044,067	-		Sama_3415	0.88	-1.8
4,044,067	-		Sama_3415	0.88	-1.5
4,044,067	-		Sama_3415	0.88	-0.6
4,044,069	+		Sama_3415	0.89	-0.6
4,044,069	+		Sama_3415	0.89	-1.9
4,044,069	+		Sama_3415	0.89	-0.9
4,044,069	+		Sama_3415	0.89	-0.1
4,044,069	+		Sama_3415	0.89	-0.5
4,044,069	+		Sama_3415	0.89	-2.0
4,044,070	-		Sama_3415	0.89	-2.3
4,044,070	-		Sama_3415	0.89	-0.1
4,044,070	-		Sama_3415	0.89	+0.3
4,044,070	-		Sama_3415	0.89	-0.6
4,044,074	+		Sama_3415	0.89	-1.3
4,044,074	+		Sama_3415	0.89	-0.6
4,044,074	+		Sama_3415	0.89	-1.5
4,044,225	+				-0.1
4,044,225	+				-1.3
4,044,226	-				-2.2
4,044,226	-				-1.5
4,044,226	-				-1.5
4,044,226	-				+0.0
4,044,226	-				-0.8
4,044,226	-				-1.6
4,044,246	+				-0.2
4,044,247	-				+0.8
4,044,247	-				-1.5
4,044,259	-				-1.4
4,044,288	+				-0.9
4,044,288	+				-2.1
4,044,288	+				-1.9
4,044,288	+				+0.9
4,044,288	+				+0.7
4,044,289	-				+0.6
4,044,289	-				-1.9
4,044,289	-				-0.1
4,044,289	-				-0.2
4,044,289	-				+0.6
4,044,317	+				-1.9
4,044,317	+				-0.4
4,044,317	+				-1.3
4,044,318	-				+0.8
4,044,318	-				+1.1
4,044,318	-				-1.0
4,044,318	-				+0.0
4,044,318	-				-0.9
4,044,318	-				+0.7
4,044,318	-				-0.6
4,044,319	+				-0.2
4,044,319	+				+0.0
4,044,320	-				+0.6
4,044,320	-				+0.4
4,044,320	-				-1.7
4,044,368	+				-0.1
4,044,387	-				-2.2
4,044,423	+				-2.4
4,044,423	+				+0.0
4,044,423	+				-1.3
4,044,423	+				-0.4
4,044,423	+				-0.2
4,044,424	-				+0.1
4,044,424	-				-1.9
4,044,424	-				+0.4
4,044,424	-				+1.1
4,044,428	+				+0.0
4,044,428	+				-1.7
4,044,429	-				+0.0
4,044,429	-				+1.1
4,044,429	-				-1.4
4,044,452	+				-1.7
4,044,499	+				-1.5
4,044,499	+				-1.7
4,044,500	-				-2.5
4,044,601	+				+2.3
4,044,601	+				+2.1
4,044,690	+				+0.8
4,044,690	+				+0.8
4,044,690	+				+1.8
4,044,690	+				+1.5
4,044,690	+				+0.0
4,044,691	-				-0.4
4,044,696	+				+1.3
4,044,696	+				+1.6
4,044,696	+				+2.3
4,044,696	+				+1.8
4,044,696	+				-0.6
4,044,697	-				+1.3
4,044,699	+				+1.6
4,044,699	+				+1.8
4,044,714	+				+1.9
4,045,022	+	glnA	Sama_3416	0.20	+1.0