Strain Fitness in Shewanella amazonensis SB2B around Sama_3314

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,943,574	+		Sama_3313	0.49	+0.3
3,943,574	+		Sama_3313	0.49	-0.5
3,943,575	-		Sama_3313	0.49	+0.3
3,943,575	-		Sama_3313	0.49	-1.5
3,943,587	+		Sama_3313	0.50	+0.3
3,943,587	+		Sama_3313	0.50	-0.6
3,943,587	+		Sama_3313	0.50	+0.5
3,943,587	+		Sama_3313	0.50	-1.5
3,943,587	+		Sama_3313	0.50	+1.0
3,943,587	+		Sama_3313	0.50	-1.1
3,943,587	+		Sama_3313	0.50	+1.3
3,943,588	-		Sama_3313	0.50	+0.6
3,943,599	+		Sama_3313	0.51	+0.1
3,943,600	-		Sama_3313	0.51	-1.1
3,943,600	-		Sama_3313	0.51	-0.3
3,943,640	-		Sama_3313	0.53	+0.2
3,943,640	-		Sama_3313	0.53	+0.2
3,943,646	+		Sama_3313	0.54	-1.3
3,943,646	+		Sama_3313	0.54	-0.6
3,943,646	+		Sama_3313	0.54	+1.6
3,943,646	+		Sama_3313	0.54	-1.0
3,943,646	+		Sama_3313	0.54	-1.5
3,943,647	-		Sama_3313	0.54	+0.7
3,943,647	-		Sama_3313	0.54	+0.5
3,943,724	+		Sama_3313	0.59	-1.5
3,943,724	+		Sama_3313	0.59	-0.8
3,943,725	-		Sama_3313	0.59	-0.3
3,943,725	-		Sama_3313	0.59	+0.2
3,943,803	-		Sama_3313	0.64	+2.6
3,943,803	-		Sama_3313	0.64	+0.8
3,943,803	-		Sama_3313	0.64	+0.1
3,943,882	+		Sama_3313	0.69	-0.6
3,943,883	-		Sama_3313	0.69	+0.5
3,943,883	-		Sama_3313	0.69	+1.3
3,943,883	-		Sama_3313	0.69	-0.7
3,943,955	+		Sama_3313	0.74	-0.1
3,943,955	+		Sama_3313	0.74	+1.4
3,943,955	+		Sama_3313	0.74	+0.1
3,943,956	-		Sama_3313	0.74	-0.5
3,943,964	-		Sama_3313	0.74	-1.9
3,944,008	+		Sama_3313	0.77	-0.0
3,944,008	+		Sama_3313	0.77	-0.4
3,944,008	+		Sama_3313	0.77	-0.0
3,944,009	-		Sama_3313	0.77	-0.4
3,944,009	-		Sama_3313	0.77	+1.0
3,944,009	-		Sama_3313	0.77	-1.7
3,944,009	-		Sama_3313	0.77	-0.2
3,944,074	-		Sama_3313	0.81	-1.6
3,944,074	-		Sama_3313	0.81	-1.0
3,944,074	-		Sama_3313	0.81	-2.3
3,944,097	+		Sama_3313	0.83	+1.0
3,944,097	+		Sama_3313	0.83	-1.0
3,944,121	+		Sama_3313	0.84	-0.7
3,944,121	+		Sama_3313	0.84	-0.2
3,944,122	-		Sama_3313	0.84	+1.0
3,944,122	-		Sama_3313	0.84	-2.2
3,944,122	-		Sama_3313	0.84	-0.6
3,944,267	-				-0.3
3,944,267	-				-0.2
3,944,272	+				-0.1
3,944,272	+				-1.3
3,944,273	-				-0.3
3,944,278	+				+1.4
3,944,279	-				-0.7
3,944,279	-				-0.1
3,944,279	-				+2.1
3,944,280	+				-0.0
3,944,280	+				+0.5
3,944,280	+				-0.1
3,944,280	+				-1.2
3,944,280	+				-0.1
3,944,280	+				-2.7
3,944,281	-				+0.3
3,944,281	-				+0.6
3,944,281	-				+6.1
3,944,281	-				-1.1
3,944,281	-				-0.4
3,944,281	-				-0.2
3,944,281	-				-2.1
3,944,281	-				+0.9
3,944,301	+				-1.7
3,944,301	+				+1.4
3,944,301	+				+1.0
3,944,301	+				-0.0
3,944,302	-				+0.7
3,944,302	-				-1.2
3,944,302	-				+0.6
3,944,302	-				+0.6
3,944,349	+				+0.4
3,944,349	+				-1.3
3,944,367	+				-0.2
3,944,367	+				-0.4
3,944,367	+				+0.7
3,944,379	+				-1.7
3,944,379	+				+0.2
3,944,379	+				+1.3
3,944,380	-				-0.9
3,944,380	-				-0.6
3,944,380	-				+1.8
3,944,380	-				-1.7
3,944,418	-				+0.7
3,944,433	-				-0.2
3,944,477	+				+1.8
3,944,477	+				+0.2
3,944,478	-				+1.1
3,944,478	-				-1.2
3,944,479	+				-0.2
3,944,479	+				+1.3
3,944,521	+				-0.9
3,944,537	-				-2.0
3,944,537	-				+1.0
3,944,602	+				+0.0
3,944,602	+				-1.4
3,944,602	+				-1.0
3,944,602	+				-1.0
3,944,602	+				-1.1
3,944,602	+				+1.0
3,944,602	+				+0.1
3,944,602	+				+1.3
3,944,602	+				-0.2
3,944,602	+				+0.3
3,944,603	-				-2.1
3,944,603	-				-0.6
3,944,603	-				+1.8
3,944,603	-				-0.5
3,944,603	-				+0.4
3,944,603	-				+0.1
3,944,603	-				+0.6
3,944,603	-				-0.5
3,944,603	-				-1.2
3,944,603	-				-0.3
3,944,603	-				+1.2
3,944,666	+				+0.2
3,944,666	+				-0.5
3,944,739	+		Sama_3314	0.14	-1.0
3,944,795	+		Sama_3314	0.19	-0.0
3,944,796	-		Sama_3314	0.19	+0.6
3,944,853	+		Sama_3314	0.23	+0.1
3,944,853	+		Sama_3314	0.23	-0.2
3,944,854	-		Sama_3314	0.23	+0.0
3,944,862	+		Sama_3314	0.23	-0.5
3,944,873	+		Sama_3314	0.24	-0.3
3,944,874	-		Sama_3314	0.24	-0.5
3,945,011	+		Sama_3314	0.35	-0.6
3,945,012	-		Sama_3314	0.35	-1.9
3,945,048	+		Sama_3314	0.37	-0.7
3,945,049	-		Sama_3314	0.37	-0.4
3,945,242	+		Sama_3314	0.52	-0.1
3,945,243	-		Sama_3314	0.52	+0.6
3,945,299	+		Sama_3314	0.56	+0.4
3,945,300	-		Sama_3314	0.56	+0.8
3,945,300	-		Sama_3314	0.56	+0.3
3,945,317	+		Sama_3314	0.57	+0.0
3,945,317	+		Sama_3314	0.57	-1.7
3,945,318	-		Sama_3314	0.57	+2.1
3,945,318	-		Sama_3314	0.57	-0.2
3,945,318	-		Sama_3314	0.57	-0.1
3,945,318	-		Sama_3314	0.57	-0.7
3,945,318	-		Sama_3314	0.57	-0.0
3,945,318	-		Sama_3314	0.57	-0.0
3,945,318	-		Sama_3314	0.57	+0.3
3,945,318	-		Sama_3314	0.57	-0.9
3,945,325	-		Sama_3314	0.58	+0.4
3,945,346	+		Sama_3314	0.59	-1.8
3,945,346	+		Sama_3314	0.59	-0.7
3,945,347	-		Sama_3314	0.59	-1.2
3,945,347	-		Sama_3314	0.59	-0.0
3,945,347	-		Sama_3314	0.59	+1.1
3,945,347	-		Sama_3314	0.59	-0.0
3,945,359	+		Sama_3314	0.60	-0.5
3,945,359	+		Sama_3314	0.60	+0.3
3,945,360	-		Sama_3314	0.60	-0.1
3,945,360	-		Sama_3314	0.60	-1.3
3,945,463	+		Sama_3314	0.68	-0.0
3,945,504	+		Sama_3314	0.71	+0.3
3,945,505	-		Sama_3314	0.71	+0.2
3,945,505	-		Sama_3314	0.71	+1.7
3,945,549	+		Sama_3314	0.74	-1.3
3,945,549	+		Sama_3314	0.74	-0.8
3,945,549	+		Sama_3314	0.74	-0.1
3,945,550	-		Sama_3314	0.74	-0.2
3,945,550	-		Sama_3314	0.74	-2.0
3,945,550	-		Sama_3314	0.74	-1.8
3,945,550	-		Sama_3314	0.74	-0.4
3,945,617	+		Sama_3314	0.79	-1.0
3,945,617	+		Sama_3314	0.79	+0.6
3,945,617	+		Sama_3314	0.79	-1.2
3,945,617	+		Sama_3314	0.79	-0.2
3,945,617	+		Sama_3314	0.79	-1.2
3,945,617	+		Sama_3314	0.79	+1.1
3,945,617	+		Sama_3314	0.79	-1.1
3,945,617	+		Sama_3314	0.79	-0.4
3,945,617	+		Sama_3314	0.79	-0.0
3,945,617	+		Sama_3314	0.79	+1.3
3,945,618	-		Sama_3314	0.79	+0.3
3,945,618	-		Sama_3314	0.79	-0.2
3,945,618	-		Sama_3314	0.79	+0.3
3,945,618	-		Sama_3314	0.79	+0.7
3,945,618	-		Sama_3314	0.79	-0.2
3,945,618	-		Sama_3314	0.79	-0.4
3,945,618	-		Sama_3314	0.79	-1.0
3,945,618	-		Sama_3314	0.79	+0.6
3,945,618	-		Sama_3314	0.79	-1.4
3,945,618	-		Sama_3314	0.79	-1.7
3,945,620	+		Sama_3314	0.80	+1.4
3,945,621	-		Sama_3314	0.80	-1.7
3,945,621	-		Sama_3314	0.80	-0.9
3,945,671	-		Sama_3314	0.83	-0.3
3,945,736	-		Sama_3314	0.88	-1.2
3,945,762	+				-1.5
3,945,762	+				+0.2
3,945,763	-				-0.7
3,945,763	-				-0.1
3,945,763	-				-0.1
3,945,764	+				+0.3
3,945,764	+				+0.1
3,945,764	+				-1.1
3,945,764	+				+1.2
3,945,765	-				+0.7
3,945,765	-				-1.1
3,945,765	-				+2.9
3,945,845	+				-0.7
3,945,845	+				+0.4
3,945,846	-				-1.2
3,945,846	-				+1.2
3,945,977	-				-1.2
3,945,977	-				-0.0
3,946,069	+		Sama_3315	0.14	-0.9
3,946,167	+		Sama_3315	0.28	-0.5
3,946,209	+		Sama_3315	0.34	+1.5
3,946,361	+		Sama_3315	0.55	+0.3
3,946,361	+		Sama_3315	0.55	-0.8
3,946,361	+		Sama_3315	0.55	+1.9
3,946,361	+		Sama_3315	0.55	+0.8
3,946,361	+		Sama_3315	0.55	+0.3
3,946,362	-		Sama_3315	0.55	+0.6
3,946,362	-		Sama_3315	0.55	+0.5
3,946,362	-		Sama_3315	0.55	+0.3
3,946,362	-		Sama_3315	0.55	-0.2
3,946,362	-		Sama_3315	0.55	+0.2
3,946,362	-		Sama_3315	0.55	+0.4
3,946,362	-		Sama_3315	0.55	-0.3
3,946,362	-		Sama_3315	0.55	-0.8
3,946,371	+		Sama_3315	0.56	-0.7
3,946,381	-		Sama_3315	0.58	+0.3
3,946,398	-		Sama_3315	0.60	-1.1
3,946,449	-		Sama_3315	0.67	+0.6
3,946,449	-		Sama_3315	0.67	-0.2
3,946,457	+		Sama_3315	0.68	+0.7
3,946,458	-		Sama_3315	0.68	-0.7
3,946,548	+		Sama_3315	0.81	-0.8
3,946,548	+		Sama_3315	0.81	+1.3
3,946,548	+		Sama_3315	0.81	+0.5
3,946,548	+		Sama_3315	0.81	+0.1
3,946,548	+		Sama_3315	0.81	-0.7
3,946,548	+		Sama_3315	0.81	-1.5
3,946,548	+		Sama_3315	0.81	-0.7
3,946,548	+		Sama_3315	0.81	-0.7
3,946,548	+		Sama_3315	0.81	-1.6
3,946,549	-		Sama_3315	0.81	+0.8
3,946,549	-		Sama_3315	0.81	+3.1
3,946,549	-		Sama_3315	0.81	-0.5
3,946,549	-		Sama_3315	0.81	-2.3
3,946,549	-		Sama_3315	0.81	+0.6
3,946,549	-		Sama_3315	0.81	-0.7
3,946,568	+		Sama_3315	0.84	-0.2
3,946,568	+		Sama_3315	0.84	+0.1
3,946,568	+		Sama_3315	0.84	-2.0
3,946,568	+		Sama_3315	0.84	-0.5
3,946,568	+		Sama_3315	0.84	-0.6
3,946,568	+		Sama_3315	0.84	-0.0
3,946,568	+		Sama_3315	0.84	-0.9
3,946,568	+		Sama_3315	0.84	+0.8
3,946,568	+		Sama_3315	0.84	+0.7
3,946,568	+		Sama_3315	0.84	+0.4
3,946,568	+		Sama_3315	0.84	-0.3
3,946,568	+		Sama_3315	0.84	+2.0
3,946,569	-		Sama_3315	0.84	-0.7
3,946,569	-		Sama_3315	0.84	+1.2
3,946,569	-		Sama_3315	0.84	-1.3
3,946,666	+				+2.0
3,946,666	+				-0.0
3,946,667	-				-1.0
3,946,667	-				-1.2
3,946,667	-				+1.1
3,946,715	+				-1.5
3,946,715	+				+0.9
3,946,715	+				+0.4
3,946,715	+				+0.3
3,946,715	+				-1.1
3,946,716	-				-0.2
3,946,716	-				-0.2
3,946,716	-				-0.2
3,946,762	+				+0.6
3,946,768	+				+0.3
3,946,768	+				-0.6
3,946,768	+				-1.5
3,946,768	+				-1.3
3,946,776	+				+0.4
3,946,776	+				-1.8
3,946,777	-				+0.9
3,946,777	-				-0.6
3,946,777	-				-2.5
3,946,777	-				-0.3
3,946,777	-				-1.1
3,946,783	-				-1.5
3,946,783	-				+1.0
3,946,810	+				-0.6
3,946,810	+				+0.5
3,946,811	-				+0.3
3,946,834	+				+0.1
3,946,842	+				-0.6
3,946,842	+				-1.3
3,946,843	-				-0.2
3,946,892	-		Sama_3316	0.26	-0.5