Strain Fitness in Shewanella amazonensis SB2B around Sama_3288

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,906,112	+		Sama_3287	0.25	-0.7
3,906,112	+		Sama_3287	0.25	+0.6
3,906,112	+		Sama_3287	0.25	-0.5
3,906,112	+		Sama_3287	0.25	+1.7
3,906,112	+		Sama_3287	0.25	+1.8
3,906,112	+		Sama_3287	0.25	+0.7
3,906,112	+		Sama_3287	0.25	-0.4
3,906,113	-		Sama_3287	0.25	-1.8
3,906,113	-		Sama_3287	0.25	+1.0
3,906,113	-		Sama_3287	0.25	+0.1
3,906,113	-		Sama_3287	0.25	-0.9
3,906,113	-		Sama_3287	0.25	-1.5
3,906,113	-		Sama_3287	0.25	-1.0
3,906,116	+		Sama_3287	0.25	-0.6
3,906,116	+		Sama_3287	0.25	-0.2
3,906,116	+		Sama_3287	0.25	-0.4
3,906,116	+		Sama_3287	0.25	-1.3
3,906,116	+		Sama_3287	0.25	+0.9
3,906,116	+		Sama_3287	0.25	-0.9
3,906,117	-		Sama_3287	0.26	-0.1
3,906,117	-		Sama_3287	0.26	-2.4
3,906,117	-		Sama_3287	0.26	+0.5
3,906,117	-		Sama_3287	0.26	-1.0
3,906,117	-		Sama_3287	0.26	-0.2
3,906,117	-		Sama_3287	0.26	+2.6
3,906,148	+		Sama_3287	0.29	-0.0
3,906,149	-		Sama_3287	0.29	+1.4
3,906,190	+		Sama_3287	0.33	-1.1
3,906,190	+		Sama_3287	0.33	-2.5
3,906,190	+		Sama_3287	0.33	+0.3
3,906,191	-		Sama_3287	0.33	-0.9
3,906,191	-		Sama_3287	0.33	-1.4
3,906,191	-		Sama_3287	0.33	-0.6
3,906,191	-		Sama_3287	0.33	+1.6
3,906,191	-		Sama_3287	0.33	+1.6
3,906,191	-		Sama_3287	0.33	-1.1
3,906,191	-		Sama_3287	0.33	-1.5
3,906,191	-		Sama_3287	0.33	-0.8
3,906,191	-		Sama_3287	0.33	+0.3
3,906,191	-		Sama_3287	0.33	-0.6
3,906,219	-		Sama_3287	0.36	-0.9
3,906,258	+		Sama_3287	0.39	-2.1
3,906,258	+		Sama_3287	0.39	+0.3
3,906,259	-		Sama_3287	0.40	+2.2
3,906,259	-		Sama_3287	0.40	+1.3
3,906,259	-		Sama_3287	0.40	-2.5
3,906,259	-		Sama_3287	0.40	-3.0
3,906,265	+		Sama_3287	0.40	+0.6
3,906,265	+		Sama_3287	0.40	+0.1
3,906,265	+		Sama_3287	0.40	-0.4
3,906,265	+		Sama_3287	0.40	-0.1
3,906,266	-		Sama_3287	0.40	-0.2
3,906,266	-		Sama_3287	0.40	+0.7
3,906,269	+		Sama_3287	0.41	-0.7
3,906,285	+		Sama_3287	0.42	+0.3
3,906,286	-		Sama_3287	0.42	+0.6
3,906,286	-		Sama_3287	0.42	-0.5
3,906,449	+		Sama_3287	0.58	-0.6
3,906,449	+		Sama_3287	0.58	-0.0
3,906,449	+		Sama_3287	0.58	-1.1
3,906,449	+		Sama_3287	0.58	+0.3
3,906,450	-		Sama_3287	0.58	-1.1
3,906,450	-		Sama_3287	0.58	+1.1
3,906,450	-		Sama_3287	0.58	+1.0
3,906,450	-		Sama_3287	0.58	-0.5
3,906,450	-		Sama_3287	0.58	+0.1
3,906,450	-		Sama_3287	0.58	-1.6
3,906,486	+		Sama_3287	0.62	+0.2
3,906,486	+		Sama_3287	0.62	-1.5
3,906,486	+		Sama_3287	0.62	-1.1
3,906,486	+		Sama_3287	0.62	-0.9
3,906,486	+		Sama_3287	0.62	+1.6
3,906,486	+		Sama_3287	0.62	-1.4
3,906,487	-		Sama_3287	0.62	-1.7
3,906,487	-		Sama_3287	0.62	+0.1
3,906,487	-		Sama_3287	0.62	+0.0
3,906,487	-		Sama_3287	0.62	-1.3
3,906,487	-		Sama_3287	0.62	-0.9
3,906,487	-		Sama_3287	0.62	-0.8
3,906,508	+		Sama_3287	0.64	+1.3
3,906,508	+		Sama_3287	0.64	-1.5
3,906,508	+		Sama_3287	0.64	+0.6
3,906,509	-		Sama_3287	0.64	-0.0
3,906,509	-		Sama_3287	0.64	-0.2
3,906,509	-		Sama_3287	0.64	-0.0
3,906,559	+		Sama_3287	0.69	-0.9
3,906,560	-		Sama_3287	0.69	+0.6
3,906,561	+		Sama_3287	0.69	+1.9
3,906,561	+		Sama_3287	0.69	-0.2
3,906,561	+		Sama_3287	0.69	-1.2
3,906,562	-		Sama_3287	0.69	+0.1
3,906,562	-		Sama_3287	0.69	-0.0
3,906,562	-		Sama_3287	0.69	-0.2
3,906,562	-		Sama_3287	0.69	+0.3
3,906,576	+		Sama_3287	0.71	+0.7
3,906,577	-		Sama_3287	0.71	+1.6
3,906,674	+		Sama_3287	0.80	+0.6
3,906,674	+		Sama_3287	0.80	+1.0
3,906,674	+		Sama_3287	0.80	+0.1
3,906,674	+		Sama_3287	0.80	-0.5
3,906,675	-		Sama_3287	0.81	-0.4
3,906,675	-		Sama_3287	0.81	+1.1
3,906,675	-		Sama_3287	0.81	-0.4
3,906,675	-		Sama_3287	0.81	+0.7
3,906,680	-		Sama_3287	0.81	-0.0
3,906,754	+		Sama_3287	0.88	+1.4
3,906,755	-		Sama_3287	0.88	-0.9
3,906,822	+				-3.2
3,906,822	+				-1.0
3,906,823	-				+1.0
3,906,823	-				-1.0
3,906,856	+				+0.8
3,906,857	-				+0.1
3,906,882	+				+1.6
3,906,882	+				-0.6
3,906,882	+				-0.4
3,906,882	+				-0.2
3,906,882	+				-0.0
3,906,882	+				+0.4
3,906,901	+				+0.1
3,906,901	+				+0.5
3,906,902	-				-1.0
3,906,902	-				+0.3
3,906,902	-				-0.5
3,906,902	-				-1.5
3,906,931	+				+0.4
3,906,932	-				-0.9
3,906,932	-				+0.4
3,906,949	+				-0.1
3,906,986	+				-0.7
3,907,012	+				-0.4
3,907,017	+				+3.2
3,907,017	+				-0.3
3,907,017	+				+0.1
3,907,018	-				-0.4
3,907,053	+				+0.1
3,907,053	+				-2.1
3,907,054	-				-0.3
3,907,059	+				-0.0
3,907,059	+				-0.6
3,907,059	+				-0.9
3,907,059	+				+0.6
3,907,060	-				+1.4
3,907,060	-				+1.2
3,907,060	-				-1.7
3,907,060	-				-0.5
3,907,060	-				+1.4
3,907,060	-				+1.7
3,907,148	-				+0.8
3,907,186	+				+3.1
3,907,186	+				-0.4
3,907,186	+				-0.5
3,907,187	-				-1.2
3,907,435	+		Sama_3288	0.23	-0.7
3,907,436	-		Sama_3288	0.23	-0.5
3,907,466	-		Sama_3288	0.25	-2.7
3,907,500	+		Sama_3288	0.27	-0.3
3,907,500	+		Sama_3288	0.27	+2.9
3,907,501	-		Sama_3288	0.27	+2.0
3,907,501	-		Sama_3288	0.27	-0.6
3,907,501	-		Sama_3288	0.27	+0.4
3,907,501	-		Sama_3288	0.27	+0.1
3,907,503	+		Sama_3288	0.27	-0.9
3,907,541	+		Sama_3288	0.29	+1.0
3,907,645	+		Sama_3288	0.36	+0.3
3,907,646	-		Sama_3288	0.36	-1.1
3,907,646	-		Sama_3288	0.36	-0.0
3,907,646	-		Sama_3288	0.36	-2.1
3,907,646	-		Sama_3288	0.36	+0.3
3,907,662	+		Sama_3288	0.37	+0.7
3,907,662	+		Sama_3288	0.37	+0.2
3,907,662	+		Sama_3288	0.37	+0.1
3,907,662	+		Sama_3288	0.37	-0.4
3,907,662	+		Sama_3288	0.37	-0.6
3,907,663	-		Sama_3288	0.37	-0.2
3,907,663	-		Sama_3288	0.37	+1.0
3,907,663	-		Sama_3288	0.37	-1.0
3,907,663	-		Sama_3288	0.37	+0.4
3,907,663	-		Sama_3288	0.37	-0.7
3,907,663	-		Sama_3288	0.37	-1.2
3,907,680	+		Sama_3288	0.39	-1.5
3,907,681	-		Sama_3288	0.39	+1.0
3,907,681	-		Sama_3288	0.39	-0.4
3,907,681	-		Sama_3288	0.39	-0.7
3,907,681	-		Sama_3288	0.39	-0.0
3,907,681	-		Sama_3288	0.39	-1.4
3,907,681	-		Sama_3288	0.39	+0.3
3,907,688	+		Sama_3288	0.39	+0.5
3,907,688	+		Sama_3288	0.39	+1.6
3,907,688	+		Sama_3288	0.39	+0.3
3,907,688	+		Sama_3288	0.39	-0.2
3,907,689	-		Sama_3288	0.39	+0.3
3,907,689	-		Sama_3288	0.39	+1.0
3,907,766	-		Sama_3288	0.44	-1.1
3,907,766	-		Sama_3288	0.44	+1.4
3,907,992	+		Sama_3288	0.59	-0.7
3,907,992	+		Sama_3288	0.59	-0.9
3,907,992	+		Sama_3288	0.59	+0.7
3,907,993	-		Sama_3288	0.59	+1.2
3,907,993	-		Sama_3288	0.59	+0.1
3,908,118	+		Sama_3288	0.67	+0.3
3,908,118	+		Sama_3288	0.67	+0.3
3,908,119	-		Sama_3288	0.67	+0.6
3,908,188	-		Sama_3288	0.72	+0.9
3,908,188	-		Sama_3288	0.72	-1.3
3,908,188	-		Sama_3288	0.72	+1.4
3,908,188	-		Sama_3288	0.72	+0.6
3,908,195	+		Sama_3288	0.72	+0.6
3,908,209	-		Sama_3288	0.73	-0.4
3,908,209	-		Sama_3288	0.73	-0.7
3,908,411	-		Sama_3288	0.86	-2.2
3,908,503	+				+0.5
3,908,532	+				+0.0
3,908,532	+				-1.3
3,908,532	+				+0.4
3,908,532	+				-0.2
3,908,533	-				-1.3
3,908,533	-				-1.3
3,908,564	+				-0.0
3,908,565	-				-1.4
3,908,565	-				-0.7
3,908,583	+				+0.3
3,908,583	+				-1.4
3,908,583	+				+0.1
3,908,584	-				+0.5
3,908,584	-				-1.3
3,908,584	-				-0.0
3,908,621	+				-0.8
3,908,621	+				-0.3
3,908,622	-				-1.4
3,908,622	-				-0.9
3,908,622	-				-0.5
3,908,622	-				+0.9
3,908,622	-				+2.3
3,908,622	-				-0.0
3,908,634	-				-2.3
3,908,634	-				-1.1
3,908,694	+				+0.1
3,908,694	+				+1.2
3,908,694	+				+0.2
3,908,694	+				-0.2
3,908,694	+				-0.7
3,908,694	+				-1.6
3,908,694	+				-0.4
3,908,694	+				-1.4
3,908,694	+				-1.4
3,908,695	-				-0.7
3,908,695	-				-0.5
3,908,695	-				+0.5
3,908,695	-				-1.4
3,908,695	-				+0.1
3,908,695	-				-0.3
3,908,695	-				-0.5
3,908,698	+				+2.3
3,908,698	+				+0.1
3,908,698	+				+0.3
3,908,698	+				-0.6
3,908,698	+				+0.3
3,908,698	+				-1.7
3,908,699	-				+0.3
3,908,699	-				-1.9
3,908,713	-				+0.3
3,908,723	+				-0.8
3,908,723	+				-0.4
3,908,775	-				-0.0
3,908,781	+				-1.7
3,908,781	+				+0.3
3,908,781	+				+1.3
3,908,781	+				+1.8
3,908,782	-				-1.1
3,908,782	-				-0.2
3,908,782	-				+0.1
3,908,782	-				-1.0
3,908,782	-				-2.3
3,908,782	-				-1.5
3,908,784	+				-0.7
3,908,784	+				-0.4
3,908,784	+				-0.7
3,908,784	+				-0.2
3,908,784	+				+1.1
3,908,784	+				+1.8
3,908,784	+				-0.7
3,908,784	+				+1.6
3,908,784	+				-0.9
3,908,784	+				-0.9
3,908,784	+				-0.6
3,908,785	-				+1.5
3,908,785	-				-0.6
3,908,785	-				-1.5
3,908,785	-				-0.7
3,908,806	-				-0.4
3,908,837	+				-0.0
3,908,837	+				+1.9
3,908,838	-				+0.6
3,908,901	+				-1.1
3,908,901	+				+0.3
3,908,901	+				+0.5
3,908,901	+				-0.5
3,908,902	-				-1.9
3,908,902	-				+2.0
3,908,902	-				+0.7
3,908,902	-				-0.0
3,908,902	-				-0.3
3,908,902	-				+1.7
3,908,902	-				+0.3
3,908,902	-				+0.3
3,908,902	-				-0.7
3,908,902	-				-0.5
3,908,921	+				+0.6
3,908,921	+				+0.8
3,908,921	+				+1.1
3,908,922	-				+0.4
3,908,930	+				+0.6
3,909,053	+		Sama_3289	0.20	-0.0
3,909,053	+		Sama_3289	0.20	-0.4
3,909,053	+		Sama_3289	0.20	+0.3
3,909,053	+		Sama_3289	0.20	+1.8
3,909,053	+		Sama_3289	0.20	-1.9
3,909,054	-		Sama_3289	0.20	+0.2
3,909,054	-		Sama_3289	0.20	+0.4
3,909,179	+		Sama_3289	0.35	-0.1
3,909,179	+		Sama_3289	0.35	-0.1
3,909,179	+		Sama_3289	0.35	-0.7
3,909,179	+		Sama_3289	0.35	-1.7
3,909,180	-		Sama_3289	0.35	-0.6
3,909,180	-		Sama_3289	0.35	-0.4
3,909,180	-		Sama_3289	0.35	-1.4
3,909,180	-		Sama_3289	0.35	-0.6
3,909,180	-		Sama_3289	0.35	-2.8
3,909,180	-		Sama_3289	0.35	-0.5
3,909,180	-		Sama_3289	0.35	-0.8
3,909,180	-		Sama_3289	0.35	-1.9
3,909,200	+		Sama_3289	0.37	-1.4
3,909,200	+		Sama_3289	0.37	+1.0
3,909,200	+		Sama_3289	0.37	-2.2
3,909,200	+		Sama_3289	0.37	+1.6
3,909,200	+		Sama_3289	0.37	-1.6
3,909,200	+		Sama_3289	0.37	+1.7
3,909,201	-		Sama_3289	0.38	-1.3
3,909,201	-		Sama_3289	0.38	-1.3
3,909,201	-		Sama_3289	0.38	-0.1
3,909,201	-		Sama_3289	0.38	+0.0
3,909,201	-		Sama_3289	0.38	-1.3
3,909,201	-		Sama_3289	0.38	+0.6
3,909,206	+		Sama_3289	0.38	+0.2
3,909,206	+		Sama_3289	0.38	-0.5
3,909,206	+		Sama_3289	0.38	-0.8
3,909,206	+		Sama_3289	0.38	+1.4
3,909,207	-		Sama_3289	0.38	-1.0
3,909,207	-		Sama_3289	0.38	+0.3
3,909,234	+		Sama_3289	0.41	-0.7
3,909,234	+		Sama_3289	0.41	-0.2
3,909,234	+		Sama_3289	0.41	+0.1
3,909,234	+		Sama_3289	0.41	-0.6
3,909,234	+		Sama_3289	0.41	-2.5
3,909,234	+		Sama_3289	0.41	+2.0
3,909,234	+		Sama_3289	0.41	+0.0
3,909,235	-		Sama_3289	0.41	+3.0
3,909,235	-		Sama_3289	0.41	+1.0
3,909,235	-		Sama_3289	0.41	+0.4
3,909,235	-		Sama_3289	0.41	+0.4
3,909,235	-		Sama_3289	0.41	+0.6
3,909,314	+		Sama_3289	0.51	-0.7
3,909,314	+		Sama_3289	0.51	+2.3
3,909,340	+		Sama_3289	0.54	+2.6
3,909,340	+		Sama_3289	0.54	-0.7
3,909,341	-		Sama_3289	0.54	-0.7
3,909,341	-		Sama_3289	0.54	-0.3
3,909,365	-		Sama_3289	0.57	-0.7
3,909,404	+		Sama_3289	0.61	-1.6
3,909,404	+		Sama_3289	0.61	-0.3
3,909,404	+		Sama_3289	0.61	-0.1
3,909,404	+		Sama_3289	0.61	+1.0
3,909,405	-		Sama_3289	0.61	+0.4
3,909,405	-		Sama_3289	0.61	+1.6
3,909,405	-		Sama_3289	0.61	-0.0
3,909,405	-		Sama_3289	0.61	+1.3
3,909,405	-		Sama_3289	0.61	-0.6
3,909,407	+		Sama_3289	0.61	-0.2
3,909,407	+		Sama_3289	0.61	-0.6
3,909,407	+		Sama_3289	0.61	-0.7
3,909,407	+		Sama_3289	0.61	-0.9
3,909,407	+		Sama_3289	0.61	+1.1
3,909,408	-		Sama_3289	0.62	-2.7
3,909,408	-		Sama_3289	0.62	-0.0
3,909,408	-		Sama_3289	0.62	-1.5
3,909,408	-		Sama_3289	0.62	-0.0
3,909,408	-		Sama_3289	0.62	-0.7
3,909,411	+		Sama_3289	0.62	-1.0
3,909,411	+		Sama_3289	0.62	-0.5
3,909,411	+		Sama_3289	0.62	+0.5
3,909,412	-		Sama_3289	0.62	-0.6
3,909,412	-		Sama_3289	0.62	+0.4
3,909,443	+		Sama_3289	0.66	-0.4
3,909,443	+		Sama_3289	0.66	-0.2
3,909,443	+		Sama_3289	0.66	-1.4
3,909,444	-		Sama_3289	0.66	-1.5
3,909,538	+		Sama_3289	0.77	+0.3
3,909,539	-		Sama_3289	0.77	-0.4
3,909,558	+		Sama_3289	0.79	-0.0
3,909,558	+		Sama_3289	0.79	-0.9
3,909,558	+		Sama_3289	0.79	-0.6
3,909,558	+		Sama_3289	0.79	+2.0
3,909,558	+		Sama_3289	0.79	-1.1
3,909,558	+		Sama_3289	0.79	+0.5
3,909,558	+		Sama_3289	0.79	-0.0
3,909,558	+		Sama_3289	0.79	-0.6
3,909,558	+		Sama_3289	0.79	-1.2
3,909,558	+		Sama_3289	0.79	+0.3
3,909,559	-		Sama_3289	0.79	-1.3
3,909,559	-		Sama_3289	0.79	+0.9
3,909,559	-		Sama_3289	0.79	-0.6
3,909,559	-		Sama_3289	0.79	+0.9
3,909,559	-		Sama_3289	0.79	-0.3
3,909,559	-		Sama_3289	0.79	-0.0
3,909,559	-		Sama_3289	0.79	+1.1
3,909,559	-		Sama_3289	0.79	-0.1
3,909,559	-		Sama_3289	0.79	-0.0
3,909,578	+		Sama_3289	0.81	-0.2
3,909,578	+		Sama_3289	0.81	-0.8
3,909,578	+		Sama_3289	0.81	+0.8
3,909,578	+		Sama_3289	0.81	-0.4
3,909,579	-		Sama_3289	0.81	+0.5
3,909,579	-		Sama_3289	0.81	+0.1
3,909,579	-		Sama_3289	0.81	-1.3
3,909,579	-		Sama_3289	0.81	+1.0
3,909,579	-		Sama_3289	0.81	+0.9
3,909,579	-		Sama_3289	0.81	+1.2
3,909,579	-		Sama_3289	0.81	+1.4
3,909,579	-		Sama_3289	0.81	-0.7
3,909,579	-		Sama_3289	0.81	+0.9