Strain Fitness in Shewanella amazonensis SB2B around Sama_3137

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,724,481	+				-0.1
3,724,481	+				-1.2
3,724,481	+				-0.6
3,724,481	+				-0.6
3,724,481	+				-2.2
3,724,481	+				-1.3
3,724,482	-				+0.3
3,724,482	-				-0.7
3,724,482	-				-2.5
3,724,559	+		Sama_3136	0.17	-0.0
3,724,559	+		Sama_3136	0.17	+1.3
3,724,559	+		Sama_3136	0.17	-0.4
3,724,559	+		Sama_3136	0.17	+0.5
3,724,559	+		Sama_3136	0.17	-1.3
3,724,560	-		Sama_3136	0.17	-1.2
3,724,578	+		Sama_3136	0.18	+0.3
3,724,579	-		Sama_3136	0.19	+0.1
3,724,585	+		Sama_3136	0.19	-0.7
3,724,585	+		Sama_3136	0.19	-0.5
3,724,613	-		Sama_3136	0.22	+0.2
3,724,628	-		Sama_3136	0.23	-1.1
3,724,628	-		Sama_3136	0.23	-1.9
3,724,628	-		Sama_3136	0.23	-0.6
3,724,628	-		Sama_3136	0.23	-0.0
3,724,652	+		Sama_3136	0.26	-1.3
3,724,724	-		Sama_3136	0.33	-0.7
3,724,748	+		Sama_3136	0.35	+0.4
3,724,801	+		Sama_3136	0.41	-0.4
3,724,868	-		Sama_3136	0.47	-0.9
3,724,939	+		Sama_3136	0.54	-0.2
3,724,939	+		Sama_3136	0.54	+0.9
3,724,939	+		Sama_3136	0.54	-0.7
3,724,940	-		Sama_3136	0.54	+0.1
3,724,940	-		Sama_3136	0.54	-0.1
3,724,940	-		Sama_3136	0.54	-1.0
3,725,001	-		Sama_3136	0.60	-0.2
3,725,122	+		Sama_3136	0.72	-1.6
3,725,122	+		Sama_3136	0.72	-0.8
3,725,122	+		Sama_3136	0.72	+1.7
3,725,123	-		Sama_3136	0.73	-0.9
3,725,123	-		Sama_3136	0.73	-0.8
3,725,123	-		Sama_3136	0.73	-1.6
3,725,239	+		Sama_3136	0.84	-0.4
3,725,239	+		Sama_3136	0.84	+1.0
3,725,240	-		Sama_3136	0.84	-0.4
3,725,240	-		Sama_3136	0.84	+0.4
3,725,292	+		Sama_3136	0.89	-1.1
3,725,292	+		Sama_3136	0.89	+1.0
3,725,292	+		Sama_3136	0.89	+0.4
3,725,292	+		Sama_3136	0.89	+0.5
3,725,293	-		Sama_3136	0.89	+0.2
3,725,293	-		Sama_3136	0.89	-0.6
3,725,293	-		Sama_3136	0.89	-0.0
3,725,293	-		Sama_3136	0.89	-0.0
3,725,367	+				-0.7
3,725,368	-				-1.9
3,725,368	-				-0.7
3,725,379	+				-3.0
3,725,379	+				-1.0
3,725,379	+				+1.2
3,725,379	+				-0.5
3,725,379	+				-3.0
3,725,380	-				+0.9
3,725,380	-				-0.7
3,725,380	-				-0.6
3,725,380	-				-1.0
3,725,380	-				-0.5
3,725,381	+				+0.3
3,725,381	+				-0.2
3,725,381	+				+0.3
3,725,381	+				-2.0
3,725,381	+				-0.7
3,725,381	+				-0.2
3,725,381	+				+0.1
3,725,381	+				-0.8
3,725,381	+				+0.4
3,725,382	-				-0.4
3,725,382	-				-0.4
3,725,382	-				-0.8
3,725,382	-				-0.3
3,725,382	-				-0.7
3,725,382	-				+1.3
3,725,382	-				+0.5
3,725,382	-				-1.2
3,725,382	-				-0.9
3,725,382	-				+0.2
3,725,382	-				-0.1
3,725,382	-				-1.3
3,725,454	+				-0.6
3,725,455	-				-0.4
3,725,455	-				-1.1
3,725,455	-				-0.4
3,725,460	+				-0.4
3,725,460	+				-2.0
3,725,461	-				-3.0
3,725,474	+				-1.0
3,725,475	-				-1.0
3,725,475	-				+1.0
3,725,475	-				+0.2
3,725,475	-				+0.2
3,725,511	+		Sama_3137	0.10	+0.0
3,725,512	-		Sama_3137	0.10	-0.5
3,725,532	+		Sama_3137	0.12	+0.1
3,725,533	-		Sama_3137	0.12	+0.4
3,725,641	+		Sama_3137	0.24	-0.3
3,725,642	-		Sama_3137	0.24	-0.4
3,725,665	-		Sama_3137	0.26	-0.1
3,725,690	+		Sama_3137	0.29	-1.1
3,725,691	-		Sama_3137	0.29	+0.7
3,725,691	-		Sama_3137	0.29	+0.7
3,725,691	-		Sama_3137	0.29	-1.2
3,725,708	-		Sama_3137	0.31	+2.6
3,725,736	+		Sama_3137	0.34	-0.5
3,725,736	+		Sama_3137	0.34	-0.0
3,725,736	+		Sama_3137	0.34	+0.2
3,725,737	-		Sama_3137	0.34	-1.0
3,725,737	-		Sama_3137	0.34	-0.8
3,725,737	-		Sama_3137	0.34	-1.5
3,725,737	-		Sama_3137	0.34	+0.2
3,725,737	-		Sama_3137	0.34	-0.7
3,725,737	-		Sama_3137	0.34	+0.4
3,725,737	-		Sama_3137	0.34	-0.5
3,725,737	-		Sama_3137	0.34	+0.8
3,725,740	+		Sama_3137	0.34	-1.1
3,725,740	+		Sama_3137	0.34	+1.6
3,725,740	+		Sama_3137	0.34	-2.3
3,725,741	-		Sama_3137	0.34	-0.0
3,725,788	-		Sama_3137	0.39	-1.3
3,725,788	-		Sama_3137	0.39	+2.3
3,725,793	+		Sama_3137	0.40	-0.7
3,725,809	+		Sama_3137	0.41	-0.6
3,725,809	+		Sama_3137	0.41	+0.8
3,725,809	+		Sama_3137	0.41	+0.8
3,725,810	-		Sama_3137	0.41	+0.7
3,725,810	-		Sama_3137	0.41	-0.9
3,725,810	-		Sama_3137	0.41	-1.5
3,725,810	-		Sama_3137	0.41	+0.0
3,725,810	-		Sama_3137	0.41	+0.3
3,725,835	+		Sama_3137	0.44	-0.2
3,725,835	+		Sama_3137	0.44	-0.3
3,725,895	+		Sama_3137	0.50	-2.0
3,725,895	+		Sama_3137	0.50	-0.1
3,725,896	-		Sama_3137	0.50	+0.2
3,725,944	+		Sama_3137	0.55	-1.4
3,725,944	+		Sama_3137	0.55	-1.5
3,725,945	-		Sama_3137	0.55	-2.2
3,725,955	+		Sama_3137	0.56	-0.9
3,725,955	+		Sama_3137	0.56	+0.6
3,725,994	+		Sama_3137	0.61	+0.8
3,725,994	+		Sama_3137	0.61	+0.6
3,725,994	+		Sama_3137	0.61	+0.7
3,726,035	+		Sama_3137	0.65	-0.2
3,726,035	+		Sama_3137	0.65	-1.4
3,726,036	-		Sama_3137	0.65	-1.1
3,726,062	+		Sama_3137	0.68	-1.3
3,726,062	+		Sama_3137	0.68	-0.8
3,726,062	+		Sama_3137	0.68	-1.0
3,726,062	+		Sama_3137	0.68	+0.2
3,726,063	-		Sama_3137	0.68	-0.2
3,726,063	-		Sama_3137	0.68	+0.4
3,726,063	-		Sama_3137	0.68	-0.7
3,726,063	-		Sama_3137	0.68	+0.6
3,726,175	-		Sama_3137	0.79	-0.6
3,726,322	+				+0.6
3,726,361	+				-1.5
3,726,362	-				-0.8
3,726,370	+				+0.0
3,726,370	+				+1.2
3,726,370	+				+1.0
3,726,370	+				-1.9
3,726,370	+				-1.0
3,726,371	-				+1.0
3,726,380	+				-0.4
3,726,380	+				-2.0
3,726,422	-				-0.6
3,726,423	+				+1.2
3,726,503	+		Sama_3138	0.19	+0.6
3,726,509	-		Sama_3138	0.20	-0.4
3,726,527	-		Sama_3138	0.24	-2.4
3,726,579	+		Sama_3138	0.37	+0.4
3,726,580	-		Sama_3138	0.37	-0.8
3,726,754	+		Sama_3138	0.78	-1.1
3,726,754	+		Sama_3138	0.78	-0.2
3,726,755	-		Sama_3138	0.78	+1.1
3,726,755	-		Sama_3138	0.78	+1.9
3,726,755	-		Sama_3138	0.78	-0.5
3,726,755	-		Sama_3138	0.78	-0.6
3,726,801	-		Sama_3138	0.89	+1.1
3,726,842	+				+0.6
3,726,843	-				-0.8
3,726,843	-				-1.3
3,726,843	-				+0.9
3,726,843	-				-2.2
3,726,862	+				-0.2
3,726,863	-				+0.1
3,726,912	-				-0.3
3,726,913	+				-1.6
3,726,913	+				-0.0
3,726,913	+				-0.6
3,726,913	+				-0.2
3,726,914	-				+1.2
3,726,914	-				+0.2
3,726,916	-				-2.0
3,726,919	-				-1.0
3,726,923	+				-1.9
3,726,981	+				+0.2
3,727,101	+		Sama_3139	0.23	-0.8
3,727,102	-		Sama_3139	0.23	-2.0
3,727,231	-		Sama_3139	0.40	+0.5
3,727,263	+		Sama_3139	0.45	-1.3
3,727,263	+		Sama_3139	0.45	-0.6
3,727,263	+		Sama_3139	0.45	-0.2
3,727,263	+		Sama_3139	0.45	-1.1
3,727,263	+		Sama_3139	0.45	+0.6
3,727,263	+		Sama_3139	0.45	-2.2
3,727,263	+		Sama_3139	0.45	+0.2
3,727,264	-		Sama_3139	0.45	-0.7
3,727,264	-		Sama_3139	0.45	+2.6
3,727,321	-		Sama_3139	0.52	-0.2
3,727,329	+		Sama_3139	0.54	-2.1
3,727,330	-		Sama_3139	0.54	+0.4
3,727,330	-		Sama_3139	0.54	+0.1
3,727,352	+		Sama_3139	0.57	-0.4
3,727,352	+		Sama_3139	0.57	+1.0
3,727,352	+		Sama_3139	0.57	-0.5
3,727,353	-		Sama_3139	0.57	-0.9
3,727,353	-		Sama_3139	0.57	-0.4
3,727,354	+		Sama_3139	0.57	-0.4
3,727,354	+		Sama_3139	0.57	+1.1
3,727,354	+		Sama_3139	0.57	-0.6
3,727,354	+		Sama_3139	0.57	-1.0
3,727,354	+		Sama_3139	0.57	-1.2
3,727,354	+		Sama_3139	0.57	+0.2
3,727,354	+		Sama_3139	0.57	+0.1
3,727,355	-		Sama_3139	0.57	-0.5
3,727,355	-		Sama_3139	0.57	-0.7
3,727,355	-		Sama_3139	0.57	-0.0
3,727,355	-		Sama_3139	0.57	-0.6
3,727,355	-		Sama_3139	0.57	-0.5
3,727,355	-		Sama_3139	0.57	-0.1