Strain Fitness in Shewanella amazonensis SB2B around Sama_2972

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,539,171	-		Sama_2971	0.61	-1.8
3,539,193	-		Sama_2971	0.62	-1.1
3,539,227	+		Sama_2971	0.63	-1.5
3,539,227	+		Sama_2971	0.63	-1.2
3,539,228	-		Sama_2971	0.63	-2.8
3,539,228	-		Sama_2971	0.63	-1.1
3,539,228	-		Sama_2971	0.63	-1.1
3,539,228	-		Sama_2971	0.63	-1.4
3,539,228	-		Sama_2971	0.63	-0.1
3,539,242	+		Sama_2971	0.64	-1.1
3,539,242	+		Sama_2971	0.64	+0.9
3,539,242	+		Sama_2971	0.64	-0.8
3,539,269	+		Sama_2971	0.65	-2.5
3,539,313	-		Sama_2971	0.67	-1.9
3,539,372	+		Sama_2971	0.69	-1.9
3,539,405	+		Sama_2971	0.71	-1.9
3,539,406	-		Sama_2971	0.71	+1.5
3,539,627	+		Sama_2971	0.80	-0.6
3,539,628	-		Sama_2971	0.80	-1.6
3,539,763	+		Sama_2971	0.86	-0.9
3,539,764	-		Sama_2971	0.86	+0.3
3,539,764	-		Sama_2971	0.86	+0.5
3,539,773	+		Sama_2971	0.87	-0.5
3,539,831	-		Sama_2971	0.89	-2.1
3,539,852	-		Sama_2971	0.90	-1.4
3,539,914	+				-1.9
3,539,923	+				-2.1
3,539,977	-				-1.5
3,539,999	+				+0.4
3,540,086	+				+1.4
3,540,086	+				+0.2
3,540,086	+				-0.2
3,540,087	-				-0.1
3,540,087	-				-0.9
3,540,129	-				-1.4
3,540,204	+				-0.1
3,540,204	+				+0.4
3,540,205	-				+0.2
3,540,205	-				-2.1
3,540,205	-				+0.3
3,540,205	-				-0.3
3,540,214	+				-0.5
3,540,315	+				+0.8
3,540,315	+				+0.5
3,540,315	+				-1.8
3,540,337	+				-0.9
3,540,337	+				+0.7
3,540,337	+				+0.6
3,540,337	+				-0.1
3,540,338	-				-1.7
3,540,338	-				-1.2
3,540,338	-				-0.1
3,540,338	-				+0.4
3,540,417	-		Sama_2972	0.13	-0.7
3,540,417	-		Sama_2972	0.13	-0.5
3,540,421	+		Sama_2972	0.13	-2.3
3,540,421	+		Sama_2972	0.13	-1.1
3,540,422	-		Sama_2972	0.13	+1.3
3,540,506	+		Sama_2972	0.16	-0.9
3,540,506	+		Sama_2972	0.16	-0.3
3,540,539	-		Sama_2972	0.17	+1.5
3,540,699	+		Sama_2972	0.24	-0.7
3,540,841	-		Sama_2972	0.29	-0.2
3,541,005	+		Sama_2972	0.36	-0.6
3,541,006	-		Sama_2972	0.36	-0.9
3,541,006	-		Sama_2972	0.36	-0.3
3,541,186	+		Sama_2972	0.43	+0.0
3,541,187	-		Sama_2972	0.43	+0.7
3,541,187	-		Sama_2972	0.43	+0.0
3,541,305	-		Sama_2972	0.48	+0.1
3,541,313	+		Sama_2972	0.48	+0.4
3,541,313	+		Sama_2972	0.48	+1.9
3,541,313	+		Sama_2972	0.48	+0.5
3,541,313	+		Sama_2972	0.48	-0.7
3,541,313	+		Sama_2972	0.48	+0.8
3,541,314	-		Sama_2972	0.48	-3.2
3,541,314	-		Sama_2972	0.48	-0.1
3,541,314	-		Sama_2972	0.48	-0.9
3,541,510	-		Sama_2972	0.56	+0.6
3,541,524	+		Sama_2972	0.57	-1.7
3,541,524	+		Sama_2972	0.57	-0.8
3,541,525	-		Sama_2972	0.57	-0.3
3,541,525	-		Sama_2972	0.57	-0.7
3,541,525	-		Sama_2972	0.57	-0.5
3,541,527	+		Sama_2972	0.57	+0.2
3,541,527	+		Sama_2972	0.57	-1.1
3,541,527	+		Sama_2972	0.57	-0.7
3,541,527	+		Sama_2972	0.57	-1.2
3,541,528	-		Sama_2972	0.57	+0.5
3,541,585	-		Sama_2972	0.59	+0.5
3,541,585	-		Sama_2972	0.59	+1.2
3,541,586	+		Sama_2972	0.59	-0.6
3,541,586	+		Sama_2972	0.59	-0.1
3,541,587	-		Sama_2972	0.59	+1.6
3,541,587	-		Sama_2972	0.59	+0.9
3,541,587	-		Sama_2972	0.59	+0.7
3,541,587	-		Sama_2972	0.59	-0.5
3,541,646	+		Sama_2972	0.61	-2.8
3,541,656	-		Sama_2972	0.62	+2.0
3,541,827	-		Sama_2972	0.69	+0.2
3,541,846	+		Sama_2972	0.69	+0.9
3,541,847	-		Sama_2972	0.69	+0.7
3,541,847	-		Sama_2972	0.69	-2.1
3,541,894	+		Sama_2972	0.71	+0.9
3,541,895	-		Sama_2972	0.71	+1.5
3,541,895	-		Sama_2972	0.71	-1.2
3,541,911	+		Sama_2972	0.72	-0.6
3,541,911	+		Sama_2972	0.72	-0.7
3,541,911	+		Sama_2972	0.72	-0.9
3,541,911	+		Sama_2972	0.72	-0.3
3,541,911	+		Sama_2972	0.72	-1.4
3,541,911	+		Sama_2972	0.72	-0.2
3,541,911	+		Sama_2972	0.72	-0.8
3,541,911	+		Sama_2972	0.72	-1.6
3,541,912	-		Sama_2972	0.72	+0.8
3,541,979	+		Sama_2972	0.75	+1.3
3,541,979	+		Sama_2972	0.75	-1.4
3,541,980	-		Sama_2972	0.75	-0.8
3,541,985	+		Sama_2972	0.75	-1.2
3,541,985	+		Sama_2972	0.75	+0.5
3,541,985	+		Sama_2972	0.75	-1.8
3,541,986	-		Sama_2972	0.75	-0.5
3,541,986	-		Sama_2972	0.75	-0.9
3,542,050	+		Sama_2972	0.78	-0.8
3,542,050	+		Sama_2972	0.78	-1.3
3,542,051	-		Sama_2972	0.78	-0.5
3,542,051	-		Sama_2972	0.78	+0.6
3,542,051	-		Sama_2972	0.78	-0.8
3,542,051	-		Sama_2972	0.78	-1.1
3,542,133	+		Sama_2972	0.81	-1.4
3,542,133	+		Sama_2972	0.81	+0.6
3,542,134	-		Sama_2972	0.81	-1.2
3,542,159	+		Sama_2972	0.82	+0.1
3,542,159	+		Sama_2972	0.82	-1.4
3,542,159	+		Sama_2972	0.82	-0.5
3,542,160	-		Sama_2972	0.82	+0.5
3,542,249	+		Sama_2972	0.85	-0.7
3,542,250	-		Sama_2972	0.85	+1.0
3,542,252	+		Sama_2972	0.86	+1.2
3,542,252	+		Sama_2972	0.86	+0.2
3,542,253	-		Sama_2972	0.86	-1.9
3,542,253	-		Sama_2972	0.86	-1.8
3,542,253	-		Sama_2972	0.86	+1.5
3,542,259	+		Sama_2972	0.86	+0.2
3,542,260	-		Sama_2972	0.86	-1.3
3,542,260	-		Sama_2972	0.86	+0.0
3,542,260	-		Sama_2972	0.86	-0.2
3,542,260	-		Sama_2972	0.86	-1.5
3,542,345	+		Sama_2972	0.89	-0.8
3,542,345	+		Sama_2972	0.89	-0.1
3,542,345	+		Sama_2972	0.89	+1.5
3,542,345	+		Sama_2972	0.89	+0.9
3,542,345	+		Sama_2972	0.89	+0.8
3,542,345	+		Sama_2972	0.89	+1.4
3,542,346	-		Sama_2972	0.89	-0.2
3,542,346	-		Sama_2972	0.89	-0.1
3,542,346	-		Sama_2972	0.89	-1.6
3,542,346	-		Sama_2972	0.89	-1.2
3,542,346	-		Sama_2972	0.89	+0.1
3,542,346	-		Sama_2972	0.89	+0.9
3,542,346	-		Sama_2972	0.89	+0.2
3,542,346	-		Sama_2972	0.89	-0.3
3,542,408	+				-0.9
3,542,470	-				-0.9
3,542,646	+				+0.1
3,542,646	+				+0.7
3,542,646	+				+0.4
3,542,707	+				-0.2
3,542,707	+				-0.1
3,542,707	+				+1.7
3,542,708	-				+3.1
3,542,708	-				-0.8
3,542,708	-				-1.7
3,542,711	+				+0.7
3,542,712	-				-2.3
3,542,712	-				-0.2
3,542,712	-				+1.3
3,542,781	+				+1.2
3,542,781	+				-1.2
3,542,782	-				-0.0
3,542,782	-				+3.1
3,542,793	+				-0.8
3,542,793	+				+1.5
3,542,794	-				+0.4
3,542,869	+				-0.7
3,542,870	-				-0.9
3,542,985	+		Sama_2973	0.13	+0.3
3,543,032	-		Sama_2973	0.15	+0.0
3,543,116	+		Sama_2973	0.19	-1.7
3,543,116	+		Sama_2973	0.19	-1.5
3,543,117	-		Sama_2973	0.19	+0.7
3,543,117	-		Sama_2973	0.19	+0.7
3,543,117	-		Sama_2973	0.19	+0.4
3,543,121	+		Sama_2973	0.19	+0.7
3,543,121	+		Sama_2973	0.19	-0.3
3,543,121	+		Sama_2973	0.19	-0.4
3,543,152	+		Sama_2973	0.21	+1.1
3,543,152	+		Sama_2973	0.21	-0.6
3,543,152	+		Sama_2973	0.21	+2.5
3,543,152	+		Sama_2973	0.21	-0.6
3,543,153	-		Sama_2973	0.21	-0.6
3,543,169	+		Sama_2973	0.21	-1.4
3,543,169	+		Sama_2973	0.21	-1.0
3,543,272	+		Sama_2973	0.26	-0.8
3,543,272	+		Sama_2973	0.26	-0.6
3,543,273	-		Sama_2973	0.26	-0.7
3,543,306	+		Sama_2973	0.28	-0.6
3,543,307	-		Sama_2973	0.28	+0.0
3,543,378	-		Sama_2973	0.31	-0.5
3,543,385	+		Sama_2973	0.31	-1.5
3,543,386	-		Sama_2973	0.31	-0.8
3,543,392	-		Sama_2973	0.31	-1.6
3,543,422	-		Sama_2973	0.33	-1.1
3,543,429	+		Sama_2973	0.33	-0.7
3,543,429	+		Sama_2973	0.33	-1.5
3,543,429	+		Sama_2973	0.33	+0.3
3,543,429	+		Sama_2973	0.33	-0.3
3,543,429	+		Sama_2973	0.33	+2.9
3,543,430	-		Sama_2973	0.33	-1.9
3,543,430	-		Sama_2973	0.33	-0.3
3,543,432	+		Sama_2973	0.33	-1.1
3,543,433	-		Sama_2973	0.33	-1.1
3,543,464	+		Sama_2973	0.35	-1.1
3,543,464	+		Sama_2973	0.35	+1.1
3,543,464	+		Sama_2973	0.35	-0.6
3,543,464	+		Sama_2973	0.35	+1.9
3,543,464	+		Sama_2973	0.35	-1.7
3,543,464	+		Sama_2973	0.35	-1.1
3,543,464	+		Sama_2973	0.35	+0.5
3,543,464	+		Sama_2973	0.35	-1.6
3,543,465	-		Sama_2973	0.35	-0.9
3,543,465	-		Sama_2973	0.35	-0.4
3,543,465	-		Sama_2973	0.35	+0.3
3,543,465	-		Sama_2973	0.35	-0.6
3,543,465	-		Sama_2973	0.35	+2.2
3,543,465	-		Sama_2973	0.35	-1.6
3,543,465	-		Sama_2973	0.35	-0.6
3,543,465	-		Sama_2973	0.35	-0.6
3,543,465	-		Sama_2973	0.35	-0.1
3,543,465	-		Sama_2973	0.35	-0.5
3,543,495	+		Sama_2973	0.36	+0.3
3,543,496	-		Sama_2973	0.36	-1.0
3,543,528	+		Sama_2973	0.38	+0.2
3,543,528	+		Sama_2973	0.38	+0.8
3,543,528	+		Sama_2973	0.38	-1.5
3,543,528	+		Sama_2973	0.38	+1.5
3,543,528	+		Sama_2973	0.38	-0.8
3,543,528	+		Sama_2973	0.38	-0.6
3,543,528	+		Sama_2973	0.38	+0.5
3,543,528	+		Sama_2973	0.38	-0.3
3,543,528	+		Sama_2973	0.38	-1.1
3,543,528	+		Sama_2973	0.38	-0.3
3,543,529	-		Sama_2973	0.38	-0.1
3,543,529	-		Sama_2973	0.38	-1.4
3,543,529	-		Sama_2973	0.38	-0.9
3,543,529	-		Sama_2973	0.38	-0.1
3,543,529	-		Sama_2973	0.38	-1.3
3,543,529	-		Sama_2973	0.38	-1.2
3,543,532	+		Sama_2973	0.38	+0.5
3,543,533	-		Sama_2973	0.38	-0.7
3,543,533	-		Sama_2973	0.38	-0.6
3,543,533	-		Sama_2973	0.38	+0.5
3,543,533	-		Sama_2973	0.38	-1.2
3,543,533	-		Sama_2973	0.38	-0.6
3,543,533	-		Sama_2973	0.38	-0.7
3,543,533	-		Sama_2973	0.38	-1.5
3,543,533	-		Sama_2973	0.38	-0.4
3,543,600	+		Sama_2973	0.41	-0.4
3,543,600	+		Sama_2973	0.41	-1.4
3,543,600	+		Sama_2973	0.41	-0.8
3,543,601	-		Sama_2973	0.41	-0.3
3,543,601	-		Sama_2973	0.41	+1.1
3,543,601	-		Sama_2973	0.41	-1.2
3,543,601	-		Sama_2973	0.41	-2.2
3,543,601	-		Sama_2973	0.41	-0.4
3,543,601	-		Sama_2973	0.41	+0.1
3,543,601	-		Sama_2973	0.41	-0.8
3,543,601	-		Sama_2973	0.41	-0.6
3,543,604	+		Sama_2973	0.41	-0.3
3,543,605	-		Sama_2973	0.41	-0.3