Strain Fitness in Shewanella amazonensis SB2B around Sama_2911

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,460,368	+		Sama_2910	0.36	+0.2
3,460,368	+		Sama_2910	0.36	-0.9
3,460,368	+		Sama_2910	0.36	-2.0
3,460,368	+		Sama_2910	0.36	+0.3
3,460,399	+		Sama_2910	0.38	-0.5
3,460,399	+		Sama_2910	0.38	+1.3
3,460,400	-		Sama_2910	0.38	+0.3
3,460,400	-		Sama_2910	0.38	+0.2
3,460,406	+		Sama_2910	0.38	+0.0
3,460,406	+		Sama_2910	0.38	+0.0
3,460,406	+		Sama_2910	0.38	-0.3
3,460,407	-		Sama_2910	0.38	+1.4
3,460,407	-		Sama_2910	0.38	+0.2
3,460,407	-		Sama_2910	0.38	-1.3
3,460,407	-		Sama_2910	0.38	-1.1
3,460,407	-		Sama_2910	0.38	-1.6
3,460,523	+		Sama_2910	0.46	-0.1
3,460,524	-		Sama_2910	0.46	-1.2
3,460,684	+		Sama_2910	0.57	-0.8
3,460,684	+		Sama_2910	0.57	-0.7
3,460,684	+		Sama_2910	0.57	-0.4
3,460,684	+		Sama_2910	0.57	-1.2
3,460,684	+		Sama_2910	0.57	+0.7
3,460,684	+		Sama_2910	0.57	-0.5
3,460,685	-		Sama_2910	0.57	+0.2
3,460,685	-		Sama_2910	0.57	-0.1
3,460,688	+		Sama_2910	0.57	+1.0
3,460,688	+		Sama_2910	0.57	-1.7
3,460,689	-		Sama_2910	0.57	+0.9
3,460,689	-		Sama_2910	0.57	-1.9
3,460,689	-		Sama_2910	0.57	+1.5
3,460,689	-		Sama_2910	0.57	-0.0
3,460,689	-		Sama_2910	0.57	+0.3
3,460,768	+		Sama_2910	0.63	-0.4
3,460,768	+		Sama_2910	0.63	+1.5
3,460,769	-		Sama_2910	0.63	-0.1
3,460,769	-		Sama_2910	0.63	-0.3
3,460,796	+		Sama_2910	0.65	-0.5
3,460,797	-		Sama_2910	0.65	-0.4
3,460,834	+		Sama_2910	0.67	+2.2
3,460,834	+		Sama_2910	0.67	+1.5
3,460,893	-		Sama_2910	0.71	-1.0
3,460,922	-		Sama_2910	0.73	-1.3
3,460,974	-		Sama_2910	0.77	+0.9
3,461,278	+				-0.9
3,461,278	+				-0.3
3,461,279	-				-1.1
3,461,279	-				-1.2
3,461,437	-		Sama_2911	0.35	-2.9
3,461,437	-		Sama_2911	0.35	-2.3
3,461,450	-		Sama_2911	0.38	+0.2
3,461,485	+		Sama_2911	0.48	+0.9
3,461,485	+		Sama_2911	0.48	-1.6
3,461,485	+		Sama_2911	0.48	-1.7
3,461,485	+		Sama_2911	0.48	-1.6
3,461,485	+		Sama_2911	0.48	-2.8
3,461,486	-		Sama_2911	0.49	+0.9
3,461,486	-		Sama_2911	0.49	-0.0
3,461,486	-		Sama_2911	0.49	-0.3
3,461,489	+		Sama_2911	0.50	-1.3
3,461,489	+		Sama_2911	0.50	-1.7
3,461,489	+		Sama_2911	0.50	-0.7
3,461,489	+		Sama_2911	0.50	-1.6
3,461,489	+		Sama_2911	0.50	-2.6
3,461,489	+		Sama_2911	0.50	-3.1
3,461,489	+		Sama_2911	0.50	-1.4
3,461,489	+		Sama_2911	0.50	+0.9
3,461,489	+		Sama_2911	0.50	+0.4
3,461,489	+		Sama_2911	0.50	-0.1
3,461,489	+		Sama_2911	0.50	-0.8
3,461,489	+		Sama_2911	0.50	-0.1
3,461,489	+		Sama_2911	0.50	-1.2
3,461,489	+		Sama_2911	0.50	+0.8
3,461,490	-		Sama_2911	0.50	-0.8
3,461,490	-		Sama_2911	0.50	+0.2
3,461,490	-		Sama_2911	0.50	-0.3
3,461,490	-		Sama_2911	0.50	+0.3
3,461,490	-		Sama_2911	0.50	-1.7
3,461,490	-		Sama_2911	0.50	+0.0
3,461,490	-		Sama_2911	0.50	-0.4
3,461,490	-		Sama_2911	0.50	-0.2
3,461,490	-		Sama_2911	0.50	+1.8
3,461,490	-		Sama_2911	0.50	-0.2
3,461,490	-		Sama_2911	0.50	-1.2
3,461,490	-		Sama_2911	0.50	-0.4
3,461,490	-		Sama_2911	0.50	-1.4
3,461,567	-		Sama_2911	0.72	-0.4
3,461,598	+		Sama_2911	0.81	+0.2
3,461,598	+		Sama_2911	0.81	-1.9
3,461,599	-		Sama_2911	0.81	-1.1
3,461,599	-		Sama_2911	0.81	+1.1
3,461,606	-		Sama_2911	0.83	-1.2
3,461,653	+				-0.4
3,461,653	+				-1.5
3,461,654	-				-1.6
3,461,654	-				-1.4
3,461,761	+				+0.3
3,461,761	+				-1.0
3,461,761	+				+1.1
3,461,762	-				+0.6
3,461,798	+				-0.5
3,461,798	+				-0.7
3,461,798	+				-0.8
3,461,798	+				-0.6
3,461,798	+				-2.6
3,461,799	-				-0.1
3,461,799	-				-0.7
3,461,799	-				-0.2
3,461,799	-				+0.4
3,461,799	-				+0.3
3,461,799	-				-0.2
3,461,799	-				+0.6
3,461,799	-				+0.3
3,461,799	-				-0.3
3,461,799	-				-1.1
3,461,799	-				-1.1
3,461,799	-				-0.9
3,461,800	+				-1.0
3,461,800	+				-0.1
3,461,800	+				+0.8
3,461,801	-				-0.2
3,461,862	+				-1.1
3,461,862	+				+1.4
3,461,862	+				-0.9
3,461,863	-				-0.8
3,461,971	-		Sama_2912	0.25	+0.3
3,461,976	+		Sama_2912	0.26	+0.1
3,461,982	+		Sama_2912	0.27	-1.7
3,461,983	-		Sama_2912	0.27	-1.3
3,462,007	+		Sama_2912	0.31	+0.3
3,462,007	+		Sama_2912	0.31	+3.5
3,462,008	-		Sama_2912	0.32	+0.7
3,462,008	-		Sama_2912	0.32	-0.7
3,462,008	-		Sama_2912	0.32	-0.1
3,462,033	+		Sama_2912	0.36	+1.5
3,462,033	+		Sama_2912	0.36	+0.7
3,462,034	-		Sama_2912	0.37	+1.9
3,462,034	-		Sama_2912	0.37	-1.0
3,462,034	-		Sama_2912	0.37	-1.2
3,462,185	+		Sama_2912	0.65	-0.7
3,462,185	+		Sama_2912	0.65	+1.5
3,462,185	+		Sama_2912	0.65	-0.6
3,462,186	-		Sama_2912	0.65	+1.5
3,462,186	-		Sama_2912	0.65	+0.4
3,462,186	-		Sama_2912	0.65	-1.0
3,462,186	-		Sama_2912	0.65	-1.7
3,462,186	-		Sama_2912	0.65	-0.7
3,462,357	+				-1.2
3,462,357	+				+1.1
3,462,358	-				+0.5
3,462,358	-				-0.4
3,462,375	+				+0.2
3,462,375	+				-1.6
3,462,376	-				+0.3
3,462,413	+				+0.6
3,462,413	+				-1.8
3,462,414	-				+2.2
3,462,414	-				+1.2
3,462,424	-				+1.4
3,462,424	-				+0.8
3,462,424	-				+1.5
3,462,424	-				+0.7
3,462,446	+				-0.8
3,462,446	+				-0.7
3,462,446	+				-0.5
3,462,447	-				-1.2
3,462,447	-				+0.4
3,462,460	+				+0.5
3,462,533	+		Sama_2913	0.11	+1.1
3,462,533	+		Sama_2913	0.11	-0.3
3,462,534	-		Sama_2913	0.11	+2.2
3,462,574	+		Sama_2913	0.14	-1.0
3,462,574	+		Sama_2913	0.14	-0.7
3,462,575	-		Sama_2913	0.14	-0.1
3,462,575	-		Sama_2913	0.14	+0.5
3,462,583	+		Sama_2913	0.15	-0.1
3,462,583	+		Sama_2913	0.15	-0.8
3,462,583	+		Sama_2913	0.15	+1.0
3,462,583	+		Sama_2913	0.15	+1.4
3,462,584	-		Sama_2913	0.15	+1.9
3,462,607	-		Sama_2913	0.16	-2.5