Strain Fitness in Shewanella amazonensis SB2B around Sama_2849

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,387,525	+				-0.8
3,387,526	-				-1.0
3,387,580	-				+2.0
3,387,601	+				-0.6
3,387,601	+				-0.8
3,387,601	+				+0.1
3,387,601	+				-0.7
3,387,601	+				-0.3
3,387,601	+				-1.5
3,387,601	+				-0.7
3,387,601	+				-0.5
3,387,601	+				-0.4
3,387,602	-				-0.0
3,387,602	-				-1.9
3,387,602	-				+0.0
3,387,602	-				+0.7
3,387,602	-				-0.5
3,387,602	-				+0.9
3,387,602	-				+0.7
3,387,602	-				-0.2
3,387,602	-				+0.2
3,387,602	-				-1.2
3,387,602	-				-1.8
3,387,602	-				+0.9
3,387,636	+				+0.1
3,387,637	-				-0.1
3,387,652	+				+0.1
3,387,652	+				-0.3
3,387,652	+				-0.1
3,387,653	-				+0.8
3,387,653	-				-0.1
3,387,678	+				-1.9
3,387,678	+				-0.6
3,387,678	+				-1.3
3,387,679	-				+1.6
3,387,679	-				+1.1
3,387,699	+				+0.4
3,387,699	+				-0.7
3,387,699	+				+1.1
3,387,699	+				-0.1
3,387,699	+				-0.1
3,387,699	+				+2.1
3,387,699	+				-0.4
3,387,699	+				+0.5
3,387,699	+				-0.7
3,387,700	-				-0.1
3,387,700	-				-2.1
3,387,700	-				+0.9
3,387,700	-				+0.9
3,387,700	-				+1.4
3,387,700	-				-0.8
3,387,700	-				-0.8
3,387,706	+				-1.6
3,387,706	+				-1.1
3,387,706	+				+0.6
3,387,933	+		Sama_2848	0.33	-0.3
3,387,934	-		Sama_2848	0.33	-1.3
3,388,019	+		Sama_2848	0.45	-1.8
3,388,019	+		Sama_2848	0.45	+0.2
3,388,019	+		Sama_2848	0.45	-0.5
3,388,019	+		Sama_2848	0.45	+0.3
3,388,019	+		Sama_2848	0.45	+1.0
3,388,019	+		Sama_2848	0.45	-0.8
3,388,020	-		Sama_2848	0.45	-1.2
3,388,020	-		Sama_2848	0.45	-0.4
3,388,229	-		Sama_2848	0.73	+0.0
3,388,233	+		Sama_2848	0.73	-0.3
3,388,325	+		Sama_2848	0.86	+1.7
3,388,325	+		Sama_2848	0.86	-0.5
3,388,325	+		Sama_2848	0.86	-1.0
3,388,326	-		Sama_2848	0.86	+0.2
3,388,326	-		Sama_2848	0.86	+1.1
3,388,326	-		Sama_2848	0.86	-1.0
3,388,326	-		Sama_2848	0.86	-0.2
3,388,371	-				-1.5
3,388,404	-				-1.5
3,388,415	+				+0.3
3,388,488	+				+1.3
3,388,488	+				+0.6
3,388,489	-				+1.5
3,388,489	-				+1.1
3,388,503	+				-0.7
3,388,503	+				-0.5
3,388,504	-				-0.3
3,388,504	-				-1.2
3,388,504	-				+0.4
3,388,595	+				-0.1
3,388,595	+				+0.9
3,388,745	+		Sama_2849	0.26	-0.4
3,388,745	+		Sama_2849	0.26	-0.4
3,388,745	+		Sama_2849	0.26	+0.7
3,388,745	+		Sama_2849	0.26	-0.8
3,388,745	+		Sama_2849	0.26	-0.5
3,388,745	+		Sama_2849	0.26	-1.4
3,388,746	-		Sama_2849	0.26	-0.2
3,388,746	-		Sama_2849	0.26	-1.7
3,388,746	-		Sama_2849	0.26	-1.3
3,388,823	+		Sama_2849	0.35	-1.7
3,388,823	+		Sama_2849	0.35	+0.3
3,388,824	-		Sama_2849	0.35	+0.8
3,388,824	-		Sama_2849	0.35	-1.4
3,388,843	+		Sama_2849	0.37	+0.6
3,388,843	+		Sama_2849	0.37	-0.5
3,388,844	-		Sama_2849	0.37	-1.5
3,388,844	-		Sama_2849	0.37	+0.0
3,388,844	-		Sama_2849	0.37	-1.0
3,388,844	-		Sama_2849	0.37	-0.3
3,388,844	-		Sama_2849	0.37	-0.3
3,388,965	+		Sama_2849	0.51	-0.8
3,388,966	-		Sama_2849	0.51	-1.0
3,388,966	-		Sama_2849	0.51	-0.5
3,388,966	-		Sama_2849	0.51	-2.3
3,389,018	+		Sama_2849	0.57	+0.0
3,389,018	+		Sama_2849	0.57	-0.8
3,389,019	-		Sama_2849	0.57	+0.1
3,389,019	-		Sama_2849	0.57	+0.5
3,389,032	-		Sama_2849	0.58	-1.3
3,389,032	-		Sama_2849	0.58	-0.5
3,389,080	+		Sama_2849	0.64	+0.5
3,389,080	+		Sama_2849	0.64	+2.1
3,389,080	+		Sama_2849	0.64	-0.8
3,389,080	+		Sama_2849	0.64	+0.2
3,389,080	+		Sama_2849	0.64	+0.2
3,389,080	+		Sama_2849	0.64	+1.0
3,389,081	-		Sama_2849	0.64	-0.3
3,389,081	-		Sama_2849	0.64	-0.8
3,389,085	+		Sama_2849	0.64	+0.7
3,389,092	-		Sama_2849	0.65	-0.3
3,389,092	-		Sama_2849	0.65	+0.3
3,389,092	-		Sama_2849	0.65	-0.2
3,389,092	-		Sama_2849	0.65	-2.2
3,389,119	+		Sama_2849	0.68	-0.4
3,389,120	-		Sama_2849	0.68	-0.7
3,389,120	-		Sama_2849	0.68	-0.5
3,389,256	+		Sama_2849	0.83	-0.1
3,389,257	-		Sama_2849	0.84	+0.7
3,389,410	-				-0.5
3,389,445	+				+0.9
3,389,447	+				-0.9
3,389,448	-				+1.1
3,389,470	+				+1.2
3,389,471	-				-0.1
3,389,474	+				-1.6
3,389,474	+				+0.5
3,389,474	+				+0.2
3,389,474	+				+0.6
3,389,487	-				+1.3
3,389,501	+				-1.1
3,389,501	+				+0.0
3,389,532	+				+0.6
3,389,532	+				-1.0
3,389,532	+				-0.5
3,389,533	-				-0.7
3,389,533	-				-0.7
3,389,533	-				-0.7
3,389,547	+		Sama_2850	0.10	+1.2
3,389,548	-		Sama_2850	0.10	-1.8
3,389,733	+		Sama_2850	0.61	-0.1
3,389,825	+		Sama_2850	0.87	-2.1
3,389,825	+		Sama_2850	0.87	-0.7
3,389,825	+		Sama_2850	0.87	-1.3
3,389,825	+		Sama_2850	0.87	-0.7
3,389,825	+		Sama_2850	0.87	-1.1
3,389,825	+		Sama_2850	0.87	-0.5
3,389,825	+		Sama_2850	0.87	-2.1
3,389,825	+		Sama_2850	0.87	-0.3
3,389,825	+		Sama_2850	0.87	+0.2
3,389,825	+		Sama_2850	0.87	-0.8
3,389,825	+		Sama_2850	0.87	-0.3
3,389,826	-		Sama_2850	0.87	-0.3
3,389,826	-		Sama_2850	0.87	-1.4
3,389,826	-		Sama_2850	0.87	-0.1
3,389,826	-		Sama_2850	0.87	-1.2
3,389,826	-		Sama_2850	0.87	-0.2
3,389,826	-		Sama_2850	0.87	+0.9
3,389,826	-		Sama_2850	0.87	+0.3
3,389,827	+		Sama_2850	0.87	-0.5
3,389,827	+		Sama_2850	0.87	-0.2
3,389,827	+		Sama_2850	0.87	+0.5
3,389,827	+		Sama_2850	0.87	+1.5
3,389,827	+		Sama_2850	0.87	+1.1
3,389,827	+		Sama_2850	0.87	-1.4
3,389,827	+		Sama_2850	0.87	-1.4
3,389,827	+		Sama_2850	0.87	-0.2
3,389,827	+		Sama_2850	0.87	+0.2
3,389,827	+		Sama_2850	0.87	-1.4
3,389,827	+		Sama_2850	0.87	-0.7
3,389,827	+		Sama_2850	0.87	+0.9
3,389,827	+		Sama_2850	0.87	-0.1
3,389,828	-		Sama_2850	0.88	-0.3
3,389,828	-		Sama_2850	0.88	-0.7
3,389,828	-		Sama_2850	0.88	-1.1
3,389,828	-		Sama_2850	0.88	+0.1
3,389,861	+				+2.1
3,389,862	-				-0.1
3,389,936	-				+0.2
3,389,936	-				-0.3
3,389,936	-				-0.8
3,389,988	-				-0.1
3,389,988	-				-1.4
3,390,029	+				-0.1
3,390,030	-				+0.9
3,390,039	+				-1.9
3,390,039	+				-0.1
3,390,039	+				-1.0
3,390,039	+				+0.5
3,390,039	+				+0.3
3,390,039	+				+1.5
3,390,040	-				-0.6
3,390,040	-				+0.9
3,390,044	+				-0.3
3,390,055	-				-1.0
3,390,083	+				-1.5
3,390,083	+				+0.9
3,390,083	+				-0.6
3,390,083	+				+0.9
3,390,083	+				+0.2
3,390,083	+				+0.2
3,390,083	+				+0.3
3,390,084	-				+0.6
3,390,140	+				+0.5
3,390,140	+				+0.2
3,390,141	-				+1.0
3,390,216	+				-2.0
3,390,216	+				+1.2
3,390,216	+				-1.8
3,390,217	-				-0.5
3,390,219	+				-0.1
3,390,220	-				-0.8
3,390,246	+		Sama_2851	0.11	-0.0
3,390,247	-		Sama_2851	0.11	-0.9
3,390,281	+		Sama_2851	0.13	-1.1
3,390,308	+		Sama_2851	0.15	-0.6
3,390,309	-		Sama_2851	0.15	-1.6
3,390,309	-		Sama_2851	0.15	-0.5
3,390,350	+		Sama_2851	0.17	-0.6
3,390,359	+		Sama_2851	0.18	+0.9
3,390,360	-		Sama_2851	0.18	-1.0
3,390,378	+		Sama_2851	0.19	-0.1
3,390,378	+		Sama_2851	0.19	-0.5