Strain Fitness in Shewanella amazonensis SB2B around Sama_2848

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,386,725	+		Sama_2847	0.47	-0.3
3,386,860	+		Sama_2847	0.58	-0.6
3,386,883	+		Sama_2847	0.59	-0.3
3,386,884	-		Sama_2847	0.60	-0.3
3,386,960	-		Sama_2847	0.65	+0.5
3,386,964	+		Sama_2847	0.66	+0.0
3,386,964	+		Sama_2847	0.66	-1.3
3,387,127	+		Sama_2847	0.78	+0.5
3,387,127	+		Sama_2847	0.78	+1.1
3,387,127	+		Sama_2847	0.78	+0.3
3,387,127	+		Sama_2847	0.78	-0.7
3,387,127	+		Sama_2847	0.78	-1.5
3,387,130	+		Sama_2847	0.79	+1.6
3,387,131	-		Sama_2847	0.79	-0.3
3,387,131	-		Sama_2847	0.79	-0.9
3,387,131	-		Sama_2847	0.79	-0.8
3,387,132	+		Sama_2847	0.79	-0.8
3,387,132	+		Sama_2847	0.79	-0.6
3,387,133	-		Sama_2847	0.79	-1.5
3,387,133	-		Sama_2847	0.79	-0.3
3,387,150	+		Sama_2847	0.80	-0.8
3,387,150	+		Sama_2847	0.80	-2.6
3,387,150	+		Sama_2847	0.80	+0.5
3,387,150	+		Sama_2847	0.80	+0.9
3,387,150	+		Sama_2847	0.80	+1.5
3,387,150	+		Sama_2847	0.80	-1.3
3,387,150	+		Sama_2847	0.80	-0.6
3,387,151	-		Sama_2847	0.80	-0.6
3,387,151	-		Sama_2847	0.80	-0.0
3,387,151	-		Sama_2847	0.80	+0.2
3,387,151	-		Sama_2847	0.80	-1.1
3,387,151	-		Sama_2847	0.80	+1.4
3,387,151	-		Sama_2847	0.80	+1.0
3,387,151	-		Sama_2847	0.80	-0.1
3,387,151	-		Sama_2847	0.80	-0.7
3,387,151	-		Sama_2847	0.80	+0.2
3,387,196	+		Sama_2847	0.84	-0.1
3,387,196	+		Sama_2847	0.84	-0.0
3,387,234	-		Sama_2847	0.87	+0.5
3,387,276	+				+0.7
3,387,309	+				-0.2
3,387,309	+				+0.3
3,387,309	+				-1.4
3,387,309	+				+1.1
3,387,310	-				+0.0
3,387,310	-				-0.8
3,387,310	-				-0.2
3,387,310	-				-2.8
3,387,310	-				+0.3
3,387,310	-				-0.1
3,387,312	+				-0.3
3,387,312	+				-0.7
3,387,312	+				-0.4
3,387,312	+				+0.8
3,387,313	-				+0.9
3,387,313	-				+0.1
3,387,313	-				+0.1
3,387,313	-				-0.1
3,387,325	+				+1.1
3,387,328	+				+0.3
3,387,328	+				+0.7
3,387,329	-				-1.6
3,387,344	+				-0.3
3,387,345	-				+0.3
3,387,345	-				-0.0
3,387,391	+				+0.0
3,387,391	+				+0.9
3,387,427	+				-0.3
3,387,427	+				-2.5
3,387,428	-				+1.5
3,387,445	+				-0.0
3,387,446	-				+1.3
3,387,458	+				+0.2
3,387,458	+				+0.5
3,387,458	+				+0.2
3,387,459	-				+0.7
3,387,459	-				+0.8
3,387,459	-				-3.1
3,387,459	-				-0.8
3,387,459	-				-0.8
3,387,459	-				-2.2
3,387,478	-				+0.0
3,387,486	+				+0.5
3,387,487	-				-1.4
3,387,500	+				-2.0
3,387,500	+				-1.5
3,387,501	-				-0.1
3,387,505	+				-1.7
3,387,505	+				-1.8
3,387,505	+				-0.6
3,387,506	-				-0.4
3,387,506	-				-1.1
3,387,506	-				-0.8
3,387,525	+				-0.8
3,387,526	-				-1.0
3,387,580	-				+2.0
3,387,601	+				-0.6
3,387,601	+				-0.8
3,387,601	+				+0.1
3,387,601	+				-0.7
3,387,601	+				-0.3
3,387,601	+				-1.5
3,387,601	+				-0.7
3,387,601	+				-0.5
3,387,601	+				-0.4
3,387,602	-				-0.0
3,387,602	-				-1.9
3,387,602	-				+0.0
3,387,602	-				+0.7
3,387,602	-				-0.5
3,387,602	-				+0.9
3,387,602	-				+0.7
3,387,602	-				-0.2
3,387,602	-				+0.2
3,387,602	-				-1.2
3,387,602	-				-1.8
3,387,602	-				+0.9
3,387,636	+				+0.1
3,387,637	-				-0.1
3,387,652	+				+0.1
3,387,652	+				-0.3
3,387,652	+				-0.1
3,387,653	-				+0.8
3,387,653	-				-0.1
3,387,678	+				-1.9
3,387,678	+				-0.6
3,387,678	+				-1.3
3,387,679	-				+1.6
3,387,679	-				+1.1
3,387,699	+				+0.4
3,387,699	+				-0.7
3,387,699	+				+1.1
3,387,699	+				-0.1
3,387,699	+				-0.1
3,387,699	+				+2.1
3,387,699	+				-0.4
3,387,699	+				+0.5
3,387,699	+				-0.7
3,387,700	-				-0.1
3,387,700	-				-2.1
3,387,700	-				+0.9
3,387,700	-				+0.9
3,387,700	-				+1.4
3,387,700	-				-0.8
3,387,700	-				-0.8
3,387,706	+				-1.6
3,387,706	+				-1.1
3,387,706	+				+0.6
3,387,933	+		Sama_2848	0.33	-0.3
3,387,934	-		Sama_2848	0.33	-1.3
3,388,019	+		Sama_2848	0.45	-1.8
3,388,019	+		Sama_2848	0.45	+0.2
3,388,019	+		Sama_2848	0.45	-0.5
3,388,019	+		Sama_2848	0.45	+0.3
3,388,019	+		Sama_2848	0.45	+1.0
3,388,019	+		Sama_2848	0.45	-0.8
3,388,020	-		Sama_2848	0.45	-1.2
3,388,020	-		Sama_2848	0.45	-0.4
3,388,229	-		Sama_2848	0.73	+0.0
3,388,233	+		Sama_2848	0.73	-0.3
3,388,325	+		Sama_2848	0.86	+1.7
3,388,325	+		Sama_2848	0.86	-0.5
3,388,325	+		Sama_2848	0.86	-1.0
3,388,326	-		Sama_2848	0.86	+0.2
3,388,326	-		Sama_2848	0.86	+1.1
3,388,326	-		Sama_2848	0.86	-1.0
3,388,326	-		Sama_2848	0.86	-0.2
3,388,371	-				-1.5
3,388,404	-				-1.5
3,388,415	+				+0.3
3,388,488	+				+1.3
3,388,488	+				+0.6
3,388,489	-				+1.5
3,388,489	-				+1.1
3,388,503	+				-0.7
3,388,503	+				-0.5
3,388,504	-				-0.3
3,388,504	-				-1.2
3,388,504	-				+0.4
3,388,595	+				-0.1
3,388,595	+				+0.9
3,388,745	+		Sama_2849	0.26	-0.4
3,388,745	+		Sama_2849	0.26	-0.4
3,388,745	+		Sama_2849	0.26	+0.7
3,388,745	+		Sama_2849	0.26	-0.8
3,388,745	+		Sama_2849	0.26	-0.5
3,388,745	+		Sama_2849	0.26	-1.4
3,388,746	-		Sama_2849	0.26	-0.2
3,388,746	-		Sama_2849	0.26	-1.7
3,388,746	-		Sama_2849	0.26	-1.3
3,388,823	+		Sama_2849	0.35	-1.7
3,388,823	+		Sama_2849	0.35	+0.3
3,388,824	-		Sama_2849	0.35	+0.8
3,388,824	-		Sama_2849	0.35	-1.4
3,388,843	+		Sama_2849	0.37	+0.6
3,388,843	+		Sama_2849	0.37	-0.5
3,388,844	-		Sama_2849	0.37	-1.5
3,388,844	-		Sama_2849	0.37	+0.0
3,388,844	-		Sama_2849	0.37	-1.0
3,388,844	-		Sama_2849	0.37	-0.3
3,388,844	-		Sama_2849	0.37	-0.3
3,388,965	+		Sama_2849	0.51	-0.8
3,388,966	-		Sama_2849	0.51	-1.0
3,388,966	-		Sama_2849	0.51	-0.5
3,388,966	-		Sama_2849	0.51	-2.3
3,389,018	+		Sama_2849	0.57	+0.0
3,389,018	+		Sama_2849	0.57	-0.8
3,389,019	-		Sama_2849	0.57	+0.1
3,389,019	-		Sama_2849	0.57	+0.5
3,389,032	-		Sama_2849	0.58	-1.3
3,389,032	-		Sama_2849	0.58	-0.5
3,389,080	+		Sama_2849	0.64	+0.5
3,389,080	+		Sama_2849	0.64	+2.1
3,389,080	+		Sama_2849	0.64	-0.8
3,389,080	+		Sama_2849	0.64	+0.2
3,389,080	+		Sama_2849	0.64	+0.2
3,389,080	+		Sama_2849	0.64	+1.0
3,389,081	-		Sama_2849	0.64	-0.3
3,389,081	-		Sama_2849	0.64	-0.8
3,389,085	+		Sama_2849	0.64	+0.7
3,389,092	-		Sama_2849	0.65	-0.3
3,389,092	-		Sama_2849	0.65	+0.3
3,389,092	-		Sama_2849	0.65	-0.2
3,389,092	-		Sama_2849	0.65	-2.2
3,389,119	+		Sama_2849	0.68	-0.4
3,389,120	-		Sama_2849	0.68	-0.7
3,389,120	-		Sama_2849	0.68	-0.5
3,389,256	+		Sama_2849	0.83	-0.1
3,389,257	-		Sama_2849	0.84	+0.7
3,389,410	-				-0.5