Strain Fitness in Shewanella amazonensis SB2B around Sama_2820

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,358,575	+				+0.2
3,359,431	+				-0.8
3,359,431	+				-1.2
3,359,431	+				-1.0
3,359,455	+	apaG	Sama_2820	0.10	-1.1
3,359,456	-	apaG	Sama_2820	0.11	-1.9
3,359,456	-	apaG	Sama_2820	0.11	+0.3
3,359,456	-	apaG	Sama_2820	0.11	-0.7
3,359,467	-	apaG	Sama_2820	0.13	-1.4
3,359,502	+	apaG	Sama_2820	0.22	-3.0
3,359,502	+	apaG	Sama_2820	0.22	-0.4
3,359,502	+	apaG	Sama_2820	0.22	-0.1
3,359,502	+	apaG	Sama_2820	0.22	-0.3
3,359,502	+	apaG	Sama_2820	0.22	-0.1
3,359,502	+	apaG	Sama_2820	0.22	-0.9
3,359,502	+	apaG	Sama_2820	0.22	-0.8
3,359,503	-	apaG	Sama_2820	0.23	-1.0
3,359,514	+	apaG	Sama_2820	0.26	+0.6
3,359,514	+	apaG	Sama_2820	0.26	-0.5
3,359,514	+	apaG	Sama_2820	0.26	-0.8
3,359,515	-	apaG	Sama_2820	0.26	-1.1
3,359,515	-	apaG	Sama_2820	0.26	-0.6
3,359,531	+	apaG	Sama_2820	0.30	-2.7
3,359,532	-	apaG	Sama_2820	0.30	-0.5
3,359,532	-	apaG	Sama_2820	0.30	-1.0
3,359,599	+	apaG	Sama_2820	0.48	-0.7
3,359,599	+	apaG	Sama_2820	0.48	+1.3
3,359,644	+	apaG	Sama_2820	0.59	-1.5
3,359,644	+	apaG	Sama_2820	0.59	-0.7
3,359,645	-	apaG	Sama_2820	0.59	-0.3
3,359,645	-	apaG	Sama_2820	0.59	+0.2
3,359,645	-	apaG	Sama_2820	0.59	-2.2
3,359,645	-	apaG	Sama_2820	0.59	-1.3
3,359,667	+	apaG	Sama_2820	0.65	+0.8
3,359,668	-	apaG	Sama_2820	0.65	-0.1
3,359,706	-	apaG	Sama_2820	0.75	-0.5
3,359,723	+	apaG	Sama_2820	0.80	+0.5
3,359,723	+	apaG	Sama_2820	0.80	+0.1
3,359,791	+				+0.5
3,359,791	+				-1.2
3,359,792	-				-1.8
3,359,799	+				-0.3
3,359,800	-				-1.0
3,359,800	-				+0.6
3,359,800	-				-0.8
3,359,800	-				-1.8
3,359,821	-				+1.3
3,359,847	+				-0.7
3,359,848	-				-1.0
3,360,028	+	apaH	Sama_2821	0.27	-1.3
3,360,029	-	apaH	Sama_2821	0.27	+0.9
3,360,069	-	apaH	Sama_2821	0.32	-0.9
3,360,105	-	apaH	Sama_2821	0.36	+0.5
3,360,152	+	apaH	Sama_2821	0.42	-1.3
3,360,152	+	apaH	Sama_2821	0.42	-1.3
3,360,152	+	apaH	Sama_2821	0.42	+0.7
3,360,152	+	apaH	Sama_2821	0.42	+0.4
3,360,152	+	apaH	Sama_2821	0.42	+1.5
3,360,152	+	apaH	Sama_2821	0.42	-1.2
3,360,153	-	apaH	Sama_2821	0.42	-0.7
3,360,153	-	apaH	Sama_2821	0.42	-0.4
3,360,235	+	apaH	Sama_2821	0.52	-0.2
3,360,236	-	apaH	Sama_2821	0.52	-1.1
3,360,252	+	apaH	Sama_2821	0.54	+1.9
3,360,252	+	apaH	Sama_2821	0.54	-2.3
3,360,253	-	apaH	Sama_2821	0.54	+1.3
3,360,253	-	apaH	Sama_2821	0.54	+0.3
3,360,253	-	apaH	Sama_2821	0.54	+0.6
3,360,266	-	apaH	Sama_2821	0.56	-0.3
3,360,276	+	apaH	Sama_2821	0.57	+0.5
3,360,276	+	apaH	Sama_2821	0.57	+0.5
3,360,276	+	apaH	Sama_2821	0.57	+0.9
3,360,276	+	apaH	Sama_2821	0.57	+1.1
3,360,276	+	apaH	Sama_2821	0.57	+0.5
3,360,277	-	apaH	Sama_2821	0.57	+0.2
3,360,277	-	apaH	Sama_2821	0.57	-1.0
3,360,277	-	apaH	Sama_2821	0.57	-0.7
3,360,277	-	apaH	Sama_2821	0.57	-1.1
3,360,333	+	apaH	Sama_2821	0.64	-1.4
3,360,334	-	apaH	Sama_2821	0.64	-0.7
3,360,334	-	apaH	Sama_2821	0.64	+0.9
3,360,370	-	apaH	Sama_2821	0.69	+0.2
3,360,370	-	apaH	Sama_2821	0.69	+0.5
3,360,458	+	apaH	Sama_2821	0.80	+0.9
3,360,458	+	apaH	Sama_2821	0.80	-1.1
3,360,458	+	apaH	Sama_2821	0.80	-1.4
3,360,458	+	apaH	Sama_2821	0.80	-1.3
3,360,518	+	apaH	Sama_2821	0.87	+1.2
3,360,519	-	apaH	Sama_2821	0.87	+0.7
3,360,530	+	apaH	Sama_2821	0.88	-0.3
3,360,530	+	apaH	Sama_2821	0.88	+3.2
3,360,531	-	apaH	Sama_2821	0.89	-0.5
3,360,532	+	apaH	Sama_2821	0.89	-1.5
3,360,532	+	apaH	Sama_2821	0.89	-0.3
3,360,533	-	apaH	Sama_2821	0.89	-0.7
3,360,617	-				-0.5
3,360,622	-				+0.3
3,360,632	+				+2.5
3,360,633	-				-1.6
3,360,651	+				-2.3
3,360,652	-				-1.5
3,360,680	-				-0.3
3,360,727	+				-0.8
3,360,727	+				+1.5
3,360,728	-				-0.2
3,360,792	+				-0.1
3,360,792	+				+0.5
3,360,793	-				+0.7
3,360,793	-				-0.1
3,360,793	-				+1.2