Strain Fitness in Shewanella amazonensis SB2B around Sama_2752

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,289,560	+		Sama_2750	0.59	+1.0
3,289,560	+		Sama_2750	0.59	+0.2
3,289,561	-		Sama_2750	0.59	-0.3
3,289,599	-		Sama_2750	0.64	-0.1
3,289,602	+		Sama_2750	0.64	-1.9
3,289,602	+		Sama_2750	0.64	+1.4
3,289,602	+		Sama_2750	0.64	-0.3
3,289,603	-		Sama_2750	0.64	-1.5
3,289,610	+		Sama_2750	0.65	-0.1
3,289,610	+		Sama_2750	0.65	-0.0
3,289,610	+		Sama_2750	0.65	+1.1
3,289,610	+		Sama_2750	0.65	-0.6
3,289,611	-		Sama_2750	0.65	+1.8
3,289,611	-		Sama_2750	0.65	+1.0
3,289,632	+		Sama_2750	0.68	+0.0
3,289,632	+		Sama_2750	0.68	-1.8
3,289,632	+		Sama_2750	0.68	-0.3
3,289,632	+		Sama_2750	0.68	-0.9
3,289,632	+		Sama_2750	0.68	+1.4
3,289,633	-		Sama_2750	0.68	-0.8
3,289,633	-		Sama_2750	0.68	-0.9
3,289,633	-		Sama_2750	0.68	-0.1
3,289,708	+		Sama_2750	0.77	+1.1
3,289,708	+		Sama_2750	0.77	-0.1
3,289,708	+		Sama_2750	0.77	+0.3
3,289,708	+		Sama_2750	0.77	-1.0
3,289,708	+		Sama_2750	0.77	-1.6
3,289,709	-		Sama_2750	0.77	-0.6
3,289,709	-		Sama_2750	0.77	+0.1
3,289,709	-		Sama_2750	0.77	+1.9
3,289,738	+		Sama_2750	0.81	+0.4
3,289,738	+		Sama_2750	0.81	+1.1
3,289,739	-		Sama_2750	0.81	-1.1
3,289,894	+				-0.1
3,289,894	+				-0.5
3,289,895	-				+0.7
3,289,920	+				+1.8
3,289,920	+				+0.2
3,289,920	+				-0.2
3,289,920	+				+0.5
3,289,921	-				+2.4
3,289,921	-				-0.1
3,289,921	-				+1.2
3,289,921	-				-0.4
3,289,921	-				-0.0
3,289,921	-				-0.6
3,289,921	-				-1.0
3,289,921	-				+0.3
3,289,921	-				-0.4
3,289,925	-				+0.1
3,290,024	+		Sama_2751	0.22	+0.2
3,290,024	+		Sama_2751	0.22	-1.7
3,290,025	-		Sama_2751	0.23	+0.9
3,290,147	-		Sama_2751	0.46	-0.7
3,290,158	+		Sama_2751	0.48	+0.7
3,290,158	+		Sama_2751	0.48	+0.7
3,290,158	+		Sama_2751	0.48	-0.4
3,290,158	+		Sama_2751	0.48	+1.4
3,290,159	-		Sama_2751	0.48	+1.1
3,290,159	-		Sama_2751	0.48	-1.7
3,290,159	-		Sama_2751	0.48	+0.0
3,290,271	-		Sama_2751	0.69	-0.3
3,290,271	-		Sama_2751	0.69	-1.1
3,290,273	+		Sama_2751	0.70	-2.8
3,290,274	-		Sama_2751	0.70	-0.3
3,290,274	-		Sama_2751	0.70	+0.6
3,290,299	+		Sama_2751	0.74	+0.1
3,290,300	-		Sama_2751	0.75	-0.6
3,290,300	-		Sama_2751	0.75	-0.3
3,290,300	-		Sama_2751	0.75	-1.3
3,290,349	+		Sama_2751	0.84	-0.8
3,290,350	-		Sama_2751	0.84	-2.0
3,290,350	-		Sama_2751	0.84	-0.7
3,290,376	+		Sama_2751	0.89	-1.6
3,290,483	+				-0.3
3,290,483	+				+0.7
3,290,484	-				+2.4
3,290,484	-				-0.6
3,290,525	-				-0.0
3,290,534	+				-1.0
3,290,534	+				-0.4
3,290,534	+				-0.1
3,290,534	+				+0.1
3,290,534	+				-0.6
3,290,535	-				+0.4
3,290,535	-				-1.4
3,290,542	-				-0.7
3,290,542	-				-2.2
3,290,655	+		Sama_2752	0.32	-0.2
3,290,655	+		Sama_2752	0.32	+1.3
3,290,655	+		Sama_2752	0.32	-0.4
3,290,656	-		Sama_2752	0.32	+0.1
3,290,656	-		Sama_2752	0.32	+0.6
3,290,659	+		Sama_2752	0.33	+0.4
3,290,660	-		Sama_2752	0.33	+0.4
3,290,674	-		Sama_2752	0.36	-0.5
3,290,745	-		Sama_2752	0.54	+1.3
3,290,858	+		Sama_2752	0.81	+0.2
3,290,947	+				-0.1
3,290,947	+				-0.6
3,290,948	-				+1.3
3,290,948	-				-0.4
3,290,948	-				-0.8
3,290,948	-				-0.6
3,290,950	+				+0.9
3,290,962	+				-1.6
3,290,963	-				+0.2
3,290,964	+				-0.9
3,290,965	-				-0.6
3,290,967	-				-1.7
3,291,044	+				+0.1
3,291,054	-				-1.0
3,291,059	+				+0.4
3,291,060	-				+1.7
3,291,079	+				-0.1
3,291,081	+				+0.4
3,291,081	+				+0.5
3,291,081	+				-1.3
3,291,081	+				-1.0
3,291,081	+				-0.5
3,291,081	+				-0.9
3,291,081	+				-0.1
3,291,082	-				-1.6
3,291,082	-				+0.7
3,291,082	-				-1.2
3,291,082	-				-1.8
3,291,082	-				+1.9
3,291,082	-				+0.2
3,291,082	-				+0.1
3,291,082	-				+0.4
3,291,082	-				-0.2
3,291,085	+				+0.9
3,291,085	+				-0.1
3,291,085	+				-1.0
3,291,191	+				+0.1
3,291,191	+				-2.2
3,291,191	+				+1.6
3,291,191	+				-1.3
3,291,191	+				-1.2
3,291,191	+				-0.9
3,291,191	+				-0.5
3,291,191	+				-0.9
3,291,191	+				-1.3
3,291,191	+				-2.1
3,291,191	+				+2.0
3,291,192	-				-0.1
3,291,192	-				+0.1
3,291,192	-				+0.9
3,291,192	-				-1.8
3,291,192	-				+0.2
3,291,192	-				+0.1
3,291,192	-				+1.2
3,291,192	-				+0.9
3,291,192	-				+0.7
3,291,192	-				+0.9
3,291,192	-				-1.1
3,291,192	-				+1.2
3,291,192	-				+0.9
3,291,192	-				-0.6
3,291,192	-				+0.1
3,291,192	-				+0.2
3,291,192	-				-1.4
3,291,192	-				-1.7
3,291,192	-				-1.4
3,291,192	-				+1.1
3,291,192	-				-1.1
3,291,193	+				-0.9
3,291,194	-				-0.5
3,291,240	+		Sama_2753	0.10	+0.6
3,291,240	+		Sama_2753	0.10	+0.0
3,291,240	+		Sama_2753	0.10	+0.6
3,291,241	-		Sama_2753	0.10	-1.0
3,291,241	-		Sama_2753	0.10	-0.1
3,291,323	-		Sama_2753	0.16	-2.1
3,291,342	+		Sama_2753	0.17	-0.2
3,291,342	+		Sama_2753	0.17	+2.4
3,291,386	+		Sama_2753	0.20	-1.3
3,291,387	-		Sama_2753	0.20	-0.2
3,291,387	-		Sama_2753	0.20	+0.8
3,291,387	-		Sama_2753	0.20	-1.0
3,291,387	-		Sama_2753	0.20	-0.4
3,291,387	-		Sama_2753	0.20	-0.3
3,291,387	-		Sama_2753	0.20	-1.1
3,291,387	-		Sama_2753	0.20	+0.6
3,291,387	-		Sama_2753	0.20	+0.8
3,291,406	-		Sama_2753	0.21	-0.4
3,291,407	+		Sama_2753	0.21	-0.0
3,291,407	+		Sama_2753	0.21	-0.2
3,291,407	+		Sama_2753	0.21	-1.9
3,291,407	+		Sama_2753	0.21	-0.6
3,291,407	+		Sama_2753	0.21	+1.4
3,291,407	+		Sama_2753	0.21	+0.4
3,291,407	+		Sama_2753	0.21	-0.2
3,291,407	+		Sama_2753	0.21	+0.6
3,291,407	+		Sama_2753	0.21	-0.1
3,291,407	+		Sama_2753	0.21	-1.3
3,291,407	+		Sama_2753	0.21	-1.1
3,291,408	-		Sama_2753	0.22	-1.8
3,291,408	-		Sama_2753	0.22	+0.9
3,291,408	-		Sama_2753	0.22	-1.1
3,291,408	-		Sama_2753	0.22	-0.1
3,291,408	-		Sama_2753	0.22	+0.3
3,291,408	-		Sama_2753	0.22	-1.1
3,291,408	-		Sama_2753	0.22	-0.7
3,291,408	-		Sama_2753	0.22	+1.2
3,291,408	-		Sama_2753	0.22	+0.4
3,291,408	-		Sama_2753	0.22	+0.9
3,291,408	-		Sama_2753	0.22	-0.6
3,291,408	-		Sama_2753	0.22	-0.3
3,291,408	-		Sama_2753	0.22	-0.1
3,291,422	-		Sama_2753	0.22	-0.6
3,291,435	-		Sama_2753	0.23	-1.6
3,291,435	-		Sama_2753	0.23	-0.0
3,291,442	-		Sama_2753	0.24	-0.6
3,291,523	+		Sama_2753	0.29	+0.4
3,291,523	+		Sama_2753	0.29	+1.7
3,291,523	+		Sama_2753	0.29	+1.0
3,291,524	-		Sama_2753	0.29	-1.5
3,291,524	-		Sama_2753	0.29	+1.9
3,291,551	+		Sama_2753	0.31	-2.9
3,291,552	-		Sama_2753	0.31	-1.0
3,291,699	+		Sama_2753	0.41	-0.6
3,291,699	+		Sama_2753	0.41	+1.3
3,291,699	+		Sama_2753	0.41	-0.0
3,291,700	-		Sama_2753	0.41	+0.3
3,291,700	-		Sama_2753	0.41	-1.4
3,291,712	+		Sama_2753	0.42	+0.1
3,291,713	-		Sama_2753	0.42	-0.6
3,291,733	+		Sama_2753	0.44	+0.1
3,291,771	+		Sama_2753	0.46	-0.1
3,291,772	-		Sama_2753	0.46	-0.4
3,291,772	-		Sama_2753	0.46	+0.0
3,291,776	-		Sama_2753	0.47	+2.0
3,291,843	+		Sama_2753	0.51	+1.0
3,291,844	-		Sama_2753	0.51	+0.1
3,291,895	+		Sama_2753	0.55	+0.7
3,291,895	+		Sama_2753	0.55	-1.5
3,291,895	+		Sama_2753	0.55	+0.4
3,291,895	+		Sama_2753	0.55	-1.7
3,291,896	-		Sama_2753	0.55	-0.6
3,291,896	-		Sama_2753	0.55	-1.6
3,291,896	-		Sama_2753	0.55	+0.1
3,291,896	-		Sama_2753	0.55	-0.5
3,291,927	+		Sama_2753	0.57	-0.6
3,291,927	+		Sama_2753	0.57	-0.2
3,291,928	-		Sama_2753	0.57	-0.4