Strain Fitness in Shewanella amazonensis SB2B around Sama_2701

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,231,329	+		Sama_2700	0.30	+0.6
3,231,329	+		Sama_2700	0.30	-0.2
3,231,329	+		Sama_2700	0.30	-0.9
3,231,329	+		Sama_2700	0.30	-0.6
3,231,330	-		Sama_2700	0.30	-0.2
3,231,344	+		Sama_2700	0.31	-0.9
3,231,345	-		Sama_2700	0.31	-0.3
3,231,345	-		Sama_2700	0.31	+0.6
3,231,345	-		Sama_2700	0.31	-0.3
3,231,348	+		Sama_2700	0.32	-0.2
3,231,348	+		Sama_2700	0.32	-0.1
3,231,348	+		Sama_2700	0.32	+3.2
3,231,348	+		Sama_2700	0.32	-0.9
3,231,349	-		Sama_2700	0.32	+1.9
3,231,401	+		Sama_2700	0.36	+0.4
3,231,401	+		Sama_2700	0.36	-0.4
3,231,401	+		Sama_2700	0.36	+1.1
3,231,401	+		Sama_2700	0.36	-0.7
3,231,401	+		Sama_2700	0.36	+3.0
3,231,401	+		Sama_2700	0.36	-0.4
3,231,401	+		Sama_2700	0.36	+1.7
3,231,401	+		Sama_2700	0.36	-0.3
3,231,401	+		Sama_2700	0.36	-0.9
3,231,402	-		Sama_2700	0.36	+1.4
3,231,402	-		Sama_2700	0.36	-1.7
3,231,433	+		Sama_2700	0.38	-0.7
3,231,433	+		Sama_2700	0.38	+0.6
3,231,559	+		Sama_2700	0.49	-0.5
3,231,679	+		Sama_2700	0.58	-1.8
3,231,679	+		Sama_2700	0.58	-0.9
3,231,679	+		Sama_2700	0.58	+2.8
3,231,679	+		Sama_2700	0.58	+0.4
3,231,679	+		Sama_2700	0.58	-2.8
3,231,680	-		Sama_2700	0.58	-0.2
3,231,680	-		Sama_2700	0.58	+2.0
3,231,680	-		Sama_2700	0.58	+0.4
3,231,680	-		Sama_2700	0.58	-0.7
3,231,680	-		Sama_2700	0.58	-0.2
3,231,680	-		Sama_2700	0.58	-0.6
3,231,680	-		Sama_2700	0.58	+0.1
3,231,695	+		Sama_2700	0.60	-0.3
3,231,695	+		Sama_2700	0.60	+1.7
3,231,695	+		Sama_2700	0.60	-1.0
3,231,696	-		Sama_2700	0.60	+2.1
3,231,723	+		Sama_2700	0.62	-1.3
3,231,723	+		Sama_2700	0.62	-0.2
3,231,723	+		Sama_2700	0.62	-0.5
3,231,724	-		Sama_2700	0.62	+0.5
3,231,724	-		Sama_2700	0.62	-2.0
3,231,756	+		Sama_2700	0.64	-0.6
3,231,776	+		Sama_2700	0.66	+0.2
3,231,776	+		Sama_2700	0.66	+0.8
3,231,776	+		Sama_2700	0.66	-1.3
3,231,777	-		Sama_2700	0.66	+0.7
3,231,777	-		Sama_2700	0.66	-0.7
3,231,777	-		Sama_2700	0.66	+1.3
3,231,787	-		Sama_2700	0.67	+1.2
3,231,797	+		Sama_2700	0.68	+2.0
3,231,798	-		Sama_2700	0.68	+0.2
3,231,798	-		Sama_2700	0.68	-0.2
3,231,798	-		Sama_2700	0.68	-1.7
3,231,798	-		Sama_2700	0.68	-1.5
3,231,811	+		Sama_2700	0.69	+1.3
3,231,811	+		Sama_2700	0.69	+0.8
3,231,811	+		Sama_2700	0.69	+0.7
3,231,811	+		Sama_2700	0.69	+1.1
3,231,812	-		Sama_2700	0.69	+0.0
3,231,812	-		Sama_2700	0.69	+0.5
3,231,812	-		Sama_2700	0.69	-0.3
3,231,812	-		Sama_2700	0.69	-1.3
3,231,832	+		Sama_2700	0.71	-0.8
3,231,875	-		Sama_2700	0.74	-1.2
3,231,888	+		Sama_2700	0.75	-0.9
3,231,905	+		Sama_2700	0.77	+0.5
3,231,905	+		Sama_2700	0.77	+1.3
3,231,905	+		Sama_2700	0.77	-1.3
3,231,905	+		Sama_2700	0.77	+1.7
3,231,906	-		Sama_2700	0.77	-1.0
3,231,906	-		Sama_2700	0.77	-1.8
3,231,906	-		Sama_2700	0.77	-0.4
3,231,906	-		Sama_2700	0.77	-1.6
3,231,966	+		Sama_2700	0.81	-0.7
3,231,966	+		Sama_2700	0.81	-1.5
3,231,967	-		Sama_2700	0.82	+1.0
3,231,967	-		Sama_2700	0.82	-1.4
3,232,022	+		Sama_2700	0.86	-1.7
3,232,023	-		Sama_2700	0.86	-0.2
3,232,023	-		Sama_2700	0.86	+0.8
3,232,023	-		Sama_2700	0.86	+0.7
3,232,023	-		Sama_2700	0.86	+0.2
3,232,023	-		Sama_2700	0.86	-0.9
3,232,023	-		Sama_2700	0.86	+0.4
3,232,058	+		Sama_2700	0.89	-0.1
3,232,058	+		Sama_2700	0.89	-0.4
3,232,108	+				-0.6
3,232,108	+				-0.5
3,232,109	-				-0.5
3,232,193	+				-0.0
3,232,194	-				-0.0
3,232,194	-				-0.7
3,232,194	-				+0.4
3,232,200	+				-0.3
3,232,200	+				+1.2
3,232,200	+				-0.1
3,232,200	+				-0.9
3,232,200	+				-1.4
3,232,201	-				-0.6
3,232,201	-				+0.1
3,232,201	-				-2.7
3,232,201	-				-0.3
3,232,249	-				-0.5
3,232,276	+				-0.6
3,232,281	+				-1.4
3,232,282	-				+0.1
3,232,282	-				-0.4
3,232,282	-				+0.7
3,232,282	-				+0.6
3,232,282	-				-0.3
3,232,282	-				-2.4
3,232,312	+				+0.0
3,232,312	+				+0.9
3,232,312	+				-0.4
3,232,313	-				-0.6
3,232,313	-				-1.0
3,232,313	-				-0.0
3,232,350	+				+2.4
3,232,351	-				+0.1
3,232,351	-				-0.5
3,232,360	-				-0.7
3,232,360	-				-1.5
3,232,419	+		Sama_2701	0.19	-0.3
3,232,420	-		Sama_2701	0.19	-0.8
3,232,514	+		Sama_2701	0.36	-0.0
3,232,514	+		Sama_2701	0.36	-1.2
3,232,515	-		Sama_2701	0.36	+0.3
3,232,515	-		Sama_2701	0.36	+1.1
3,232,555	+		Sama_2701	0.43	+0.8
3,232,555	+		Sama_2701	0.43	-0.2
3,232,556	-		Sama_2701	0.43	-0.9
3,232,686	-		Sama_2701	0.66	+0.1
3,232,686	-		Sama_2701	0.66	+0.3
3,232,724	+		Sama_2701	0.73	+0.1
3,232,725	-		Sama_2701	0.73	-0.6
3,232,727	-		Sama_2701	0.73	+0.6
3,232,727	-		Sama_2701	0.73	-0.4
3,232,800	-		Sama_2701	0.86	+1.0
3,232,802	+		Sama_2701	0.87	+0.2
3,232,864	-				+0.8
3,232,864	-				-0.2
3,232,874	+				-1.2
3,232,883	+				-0.7
3,232,883	+				+0.3
3,232,883	+				-0.2
3,232,883	+				-0.2
3,232,883	+				+0.4
3,232,883	+				-3.1
3,232,884	-				+0.2
3,232,884	-				-0.9
3,232,900	+				+0.1
3,232,900	+				+0.1
3,232,901	-				-0.2
3,232,938	-				+2.4
3,232,967	+				-0.2
3,232,967	+				-0.4
3,232,967	+				+0.2
3,232,968	-				-0.2
3,232,968	-				-0.2
3,232,968	-				+0.4
3,232,968	-				+1.3
3,232,969	+				-0.6
3,232,970	-				-0.6
3,232,985	-				+1.4
3,233,013	-				+1.7
3,233,020	+				+0.4
3,233,021	-				-0.3
3,233,043	+				-0.9
3,233,043	+				+1.7
3,233,044	-				-0.4
3,233,044	-				-0.6
3,233,069	-				-1.5
3,233,069	-				+1.0
3,233,069	-				-1.7
3,233,078	-				-1.4
3,233,078	-				-1.0
3,233,085	+				-0.9
3,233,085	+				-0.6
3,233,085	+				-0.3
3,233,085	+				-0.8
3,233,085	+				-0.4
3,233,085	+				+0.4
3,233,085	+				-0.6
3,233,085	+				+0.4
3,233,086	-				-1.3
3,233,086	-				-0.6
3,233,086	-				-0.5
3,233,086	-				+0.9
3,233,086	-				-1.3
3,233,092	-				-0.6
3,233,092	-				-0.9
3,233,105	-				+0.4
3,233,105	-				-1.2
3,233,105	-				-0.9
3,233,136	+				-1.0
3,233,170	+		Sama_2702	0.11	-0.4
3,233,170	+		Sama_2702	0.11	+0.3
3,233,170	+		Sama_2702	0.11	+0.4
3,233,171	-		Sama_2702	0.11	-0.2
3,233,191	+		Sama_2702	0.13	+1.2
3,233,202	+		Sama_2702	0.14	+0.1
3,233,202	+		Sama_2702	0.14	-0.5
3,233,203	-		Sama_2702	0.14	-0.2
3,233,203	-		Sama_2702	0.14	-0.7
3,233,203	-		Sama_2702	0.14	-0.3
3,233,204	+		Sama_2702	0.14	+0.4
3,233,204	+		Sama_2702	0.14	+0.0
3,233,204	+		Sama_2702	0.14	-1.8
3,233,205	-		Sama_2702	0.14	+0.4
3,233,205	-		Sama_2702	0.14	-1.4
3,233,205	-		Sama_2702	0.14	-1.3
3,233,205	-		Sama_2702	0.14	-0.8
3,233,205	-		Sama_2702	0.14	+1.0
3,233,205	-		Sama_2702	0.14	-0.3
3,233,205	-		Sama_2702	0.14	-1.8
3,233,208	+		Sama_2702	0.15	-1.5
3,233,208	+		Sama_2702	0.15	+0.2
3,233,209	-		Sama_2702	0.15	+1.1
3,233,209	-		Sama_2702	0.15	-0.0
3,233,209	-		Sama_2702	0.15	-1.4
3,233,213	-		Sama_2702	0.15	+0.8
3,233,237	+		Sama_2702	0.17	-1.3
3,233,248	-		Sama_2702	0.18	+1.0
3,233,320	+		Sama_2702	0.25	-0.7
3,233,320	+		Sama_2702	0.25	-0.3
3,233,320	+		Sama_2702	0.25	-0.7
3,233,320	+		Sama_2702	0.25	-1.2
3,233,320	+		Sama_2702	0.25	+0.8
3,233,320	+		Sama_2702	0.25	+2.0
3,233,320	+		Sama_2702	0.25	+1.8
3,233,320	+		Sama_2702	0.25	+0.8
3,233,320	+		Sama_2702	0.25	-1.2
3,233,321	-		Sama_2702	0.25	-0.9
3,233,321	-		Sama_2702	0.25	+1.6
3,233,321	-		Sama_2702	0.25	+1.4
3,233,321	-		Sama_2702	0.25	+0.1
3,233,321	-		Sama_2702	0.25	-0.7
3,233,321	-		Sama_2702	0.25	-0.9
3,233,321	-		Sama_2702	0.25	-0.9
3,233,324	+		Sama_2702	0.25	+0.3
3,233,324	+		Sama_2702	0.25	+0.2
3,233,325	-		Sama_2702	0.25	-1.4
3,233,325	-		Sama_2702	0.25	-1.3
3,233,325	-		Sama_2702	0.25	-0.4
3,233,325	-		Sama_2702	0.25	-1.2
3,233,347	+		Sama_2702	0.27	+0.1
3,233,348	-		Sama_2702	0.27	-0.6
3,233,348	-		Sama_2702	0.27	-0.9
3,233,393	-		Sama_2702	0.31	-0.7
3,233,426	+		Sama_2702	0.34	+0.1
3,233,427	-		Sama_2702	0.34	+0.0
3,233,438	+		Sama_2702	0.35	+0.1
3,233,438	+		Sama_2702	0.35	+0.4
3,233,439	-		Sama_2702	0.35	-0.6
3,233,439	-		Sama_2702	0.35	+0.7
3,233,484	+		Sama_2702	0.39	-2.4
3,233,485	-		Sama_2702	0.39	-1.5
3,233,485	-		Sama_2702	0.39	+0.8
3,233,485	-		Sama_2702	0.39	-0.7
3,233,498	-		Sama_2702	0.40	+0.3
3,233,638	+		Sama_2702	0.53	-1.2
3,233,638	+		Sama_2702	0.53	+1.3
3,233,639	-		Sama_2702	0.53	-2.6
3,233,657	+		Sama_2702	0.55	-0.2
3,233,658	-		Sama_2702	0.55	-0.3
3,233,673	+		Sama_2702	0.56	-0.1
3,233,673	+		Sama_2702	0.56	+0.8
3,233,673	+		Sama_2702	0.56	-0.6
3,233,674	-		Sama_2702	0.56	-0.3
3,233,703	-		Sama_2702	0.59	-0.4
3,233,703	-		Sama_2702	0.59	-0.2
3,233,703	-		Sama_2702	0.59	+0.4
3,233,723	-		Sama_2702	0.60	-0.2
3,233,748	-		Sama_2702	0.63	-0.6
3,233,761	+		Sama_2702	0.64	+0.1
3,233,762	-		Sama_2702	0.64	+1.2
3,233,769	+		Sama_2702	0.65	+3.0
3,233,769	+		Sama_2702	0.65	-1.4
3,233,846	+		Sama_2702	0.71	+0.2
3,233,847	-		Sama_2702	0.71	-0.7
3,233,875	+		Sama_2702	0.74	-0.7
3,233,876	-		Sama_2702	0.74	-1.3
3,233,876	-		Sama_2702	0.74	-0.6